FFCP PHASE1:Hg19::chr11:8290319..8290340,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4004 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6641 | |||
|TSSclassifier=strong | |||
|UniProt=E9PSF5 | |||
|association_with_transcript=-56bp_to_ENST00000428101_5end | |||
|description=CAGE_peak_1_at_LMO1_5end | |||
|id=chr11:8290319..8290340,- | |||
|ontology_enrichment_celltype=CL:0002319!1.23e-15!25;CL:0002322!4.77e-15!5;CL:0000133!2.22e-12!59;CL:0000047!9.47e-10!8;CL:0000221!1.49e-09!71;CL:0002605!2.38e-09!3;CL:0000095!2.25e-08!17;CL:0000123!2.25e-08!17;CL:0000333!2.36e-08!41;CL:0000242!3.08e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.24e-25;5!CL:0002319;3.92e-23;25!CL:0000047;1.69e-17;2!CL:0000123;3.82e-17;2!CL:0000242;3.82e-17;2!CL:0002321;3.58e-13;15!CL:0000540;5.32e-13;6!CL:0000404;5.32e-13;6!CL:0000312;2.18e-07;5!CL:0000095;5.47e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.20e-25,8;CL:0002322,1.97e-25,5;CL:0002319,3.98e-23,25;CL:0000242,3.67e-17,2;CL:0000133,4.72e-17,59;CL:0000221,1.08e-13,72;CL:0000540,5.22e-13,6;CL:0000031,5.22e-13,6;CL:0000404,5.22e-13,6;CL:0000333,2.13e-08,41;CL:0000312,2.14e-07,5;CL:0000095,5.43e-07,17;CL:0000123,5.43e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;5.32e-13;6!UBERON:0003056;9.32e-12;3!CL:0000133;6.16e-11;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!4.83e-45!86;UBERON:0000073!1.67e-44!94;UBERON:0001016!1.67e-44!94;UBERON:0001017!1.56e-42!82;UBERON:0002020!3.89e-39!34;UBERON:0003528!3.89e-39!34;UBERON:0001893!5.82e-39!34;UBERON:0001869!2.80e-38!32;UBERON:0002791!5.91e-37!33;UBERON:0001049!3.22e-34!57;UBERON:0005068!3.22e-34!57;UBERON:0006241!3.22e-34!57;UBERON:0007135!3.22e-34!57;UBERON:0000955!4.79e-33!69;UBERON:0006238!4.79e-33!69;UBERON:0002780!2.40e-31!41;UBERON:0001890!2.40e-31!41;UBERON:0006240!2.40e-31!41;UBERON:0003075!3.64e-31!86;UBERON:0007284!3.64e-31!86;UBERON:0003080!1.84e-30!42;UBERON:0002616!2.32e-30!59;UBERON:0000956!3.25e-30!25;UBERON:0000203!3.25e-30!25;UBERON:0003056!1.06e-29!61;UBERON:0002346!2.29e-29!90;UBERON:0004121!2.34e-25!169;UBERON:0000924!1.68e-24!173;UBERON:0006601!1.68e-24!173;UBERON:0002619!1.72e-23!22;UBERON:0001950!1.58e-22!20;UBERON:0000033!1.54e-21!123;UBERON:0000153!2.23e-21!129;UBERON:0007811!2.23e-21!129;UBERON:0007023!8.51e-12!115;UBERON:0002308!2.87e-10!9;UBERON:0000125!2.87e-10!9;UBERON:0001872!2.46e-09!5;UBERON:0000064!5.04e-09!219;UBERON:0001871!1.29e-08!7;UBERON:0000988!2.37e-08!3;UBERON:0002420!1.75e-07!9;UBERON:0007245!1.75e-07!9;UBERON:0010009!1.75e-07!9;UBERON:0010011!1.75e-07!9;UBERON:0000454!1.75e-07!9;UBERON:0000200!2.87e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.14e-07;5!UBERON:0005388;2.14e-07;5!UBERON:0001802;2.14e-07;5!UBERON:0001872;2.90e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.53e-12,89;UBERON:0001017,6.70e-12,81;UBERON:0004121,2.52e-10,171;UBERON:0000924,2.52e-10,171;UBERON:0006601,2.52e-10,171;UBERON:0001872,2.68e-07,5;UBERON:0003056,3.81e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,8.5870796139317,0.821246550437305,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31750041646231,3.97589304964456,2.5562667431294,0.725627385107593,1.26160425437814,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.31960861178188,9.10978977003352,7.73288812777695,9.71594338939223,6.37938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,0.344743373241465,0,0.868124974666461,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0,0,3.36680037793539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03382666702479,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.425246896606173,0,0.315222829196793,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.496771223531068,0.276697269872462,0,0,0,0,1.40500471742064,13.0428925749743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,12.7775276684656,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0.504143392443436,0.207471757392654,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,1.56215619722769,0,0.19024743058172,4.37579847214576,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.328863867814245,0,0,0,0.471346769748006,0,0.913158720509496,0,0,8.36275566866879,2.05417695252545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0,4.50756118656259,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,3.9271562130634,0,0,0,0,0.252332849670158,1.52971800749174,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LMO1 | |||
}} |
Revision as of 06:27, 11 January 2014
Short description: | p1@LMO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMO1_5end |
Coexpression cluster: | NA |
Association with transcript: | -56bp_to_ENST00000428101_5end |
EntrezGene: | LMO1 |
HGNC: | 6641 |
UniProt: | E9PSF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.20e-25 | 8 |
embryonic stem cell | 1.97e-25 | 5 |
neural cell | 3.98e-23 | 25 |
Merkel cell | 3.67e-17 | 2 |
neurectodermal cell | 4.72e-17 | 59 |
ectodermal cell | 1.08e-13 | 72 |
neuron | 5.22e-13 | 6 |
neuroblast | 5.22e-13 | 6 |
electrically signaling cell | 5.22e-13 | 6 |
migratory neural crest cell | 2.13e-08 | 41 |
keratinocyte | 2.14e-07 | 5 |
neuron associated cell | 5.43e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.43e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.53e-12 | 89 |
central nervous system | 6.70e-12 | 81 |
ectoderm-derived structure | 2.52e-10 | 171 |
ectoderm | 2.52e-10 | 171 |
presumptive ectoderm | 2.52e-10 | 171 |
parietal lobe | 2.68e-07 | 5 |
pre-chordal neural plate | 3.81e-07 | 61 |