FFCP PHASE1:Hg19::chr10:95242333..95242349,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26509 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3656 | |||
|TSSclassifier=strong | |||
|UniProt=F8W8J4,C9JCN0,Q9NZM1 | |||
|association_with_transcript=-259bp_to_ENST00000371489,ENST00000371501,ENST00000371502,NM_013451,NM_133337,uc001kin.2,uc001kio.2,uc001kip.3,uc009xuf.2_5end | |||
|description=CAGE_peak_5_at_MYOF_5end | |||
|id=chr10:95242333..95242349,- | |||
|ontology_enrichment_celltype=CL:0000548!6.76e-24!679;CL:0000004!6.76e-24!679;CL:0000255!6.76e-24!679;CL:0000055!1.79e-23!180;CL:0000012!2.99e-23!682;CL:0000057!3.04e-16!75;CL:0000144!1.33e-14!625;CL:0002371!1.60e-14!591;CL:0000220!7.69e-14!246;CL:0002321!3.19e-13!248;CL:0000003!1.97e-12!722;CL:0000359!2.24e-11!32;CL:0002620!9.04e-11!23;CL:0000063!1.06e-10!578;CL:0000222!3.93e-10!119;CL:0000192!1.36e-09!42;CL:0000514!1.36e-09!42;CL:0000680!3.86e-09!57;CL:0000056!3.86e-09!57;CL:0000355!3.86e-09!57;CL:0000066!1.05e-08!254;CL:0000187!3.81e-08!54;CL:0000183!5.98e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.23e-12;23!CL:0000359;5.52e-11;32!CL:0002334;2.99e-07;12!CL:0000192;3.36e-07;43!CL:0000057;4.14e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.33e-17,76;CL:0000359,4.49e-12,32;CL:0002620,7.53e-12,23;CL:0002321,3.28e-11,250;CL:0000192,2.56e-09,43;CL:0000514,2.56e-09,43;CL:0000222,3.41e-08,121;CL:0000680,5.84e-08,58;CL:0000056,5.84e-08,58;CL:0000355,5.84e-08,58;CL:0002334,3.62e-07,12;CL:0000187,5.93e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;3.36e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!5.68e-15!216;UBERON:0001637!1.26e-12!42;UBERON:0003509!1.26e-12!42;UBERON:0004572!1.26e-12!42;UBERON:0000926!1.63e-12!448;UBERON:0004120!1.63e-12!448;UBERON:0006603!1.63e-12!448;UBERON:0003102!1.11e-11!95;UBERON:0005256!1.75e-11!143;UBERON:0000914!3.04e-11!83;UBERON:0002329!3.04e-11!83;UBERON:0003077!3.04e-11!83;UBERON:0003059!3.04e-11!83;UBERON:0007282!3.04e-11!83;UBERON:0009618!3.04e-11!83;UBERON:0007285!3.04e-11!83;UBERON:0000468!1.05e-10!659;UBERON:0004573!4.05e-10!33;UBERON:0004571!4.05e-10!33;UBERON:0000486!8.20e-10!82;UBERON:0004290!2.09e-09!70;UBERON:0000467!2.20e-09!625;UBERON:0000480!3.53e-09!626;UBERON:0000475!3.66e-09!365;UBERON:0002199!4.79e-09!45;UBERON:0002416!4.79e-09!45;UBERON:0003104!5.25e-09!238;UBERON:0009142!5.25e-09!238;UBERON:0001981!2.16e-08!60;UBERON:0007500!2.16e-08!60;UBERON:0004537!2.16e-08!60;UBERON:0006965!2.16e-08!60;UBERON:0002097!2.60e-08!40;UBERON:0002049!1.28e-07!79;UBERON:0007798!1.28e-07!79;UBERON:0000055!2.75e-07!69;UBERON:0001134!3.22e-07!61;UBERON:0002036!3.22e-07!61;UBERON:0003082!3.22e-07!61;UBERON:0002204!3.37e-07!167;UBERON:0003914!5.59e-07!118;UBERON:0000490!5.89e-07!138;UBERON:0002385!6.80e-07!63;UBERON:0001015!6.80e-07!63;UBERON:0000383!6.80e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.31e-09;42!UBERON:0003509;3.31e-09;42!UBERON:0004572;3.31e-09;42!UBERON:0004573;4.54e-09;33!UBERON:0004571;4.54e-09;33!UBERON:0002097;1.24e-07;41!UBERON:0002199;3.12e-07;46!UBERON:0002416;3.12e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.11e-13,99;UBERON:0001637,3.38e-13,42;UBERON:0003509,3.38e-13,42;UBERON:0004572,3.38e-13,42;UBERON:0002100,3.66e-12,199;UBERON:0002199,1.69e-10,46;UBERON:0002416,1.69e-10,46;UBERON:0004573,2.08e-10,33;UBERON:0004571,2.08e-10,33;UBERON:0002097,1.12e-09,41;UBERON:0007503,1.92e-09,78;UBERON:0000486,2.35e-09,83;UBERON:0002329,7.97e-09,71;UBERON:0003059,7.97e-09,71;UBERON:0007282,7.97e-09,71;UBERON:0004290,7.97e-09,71;UBERON:0009618,7.97e-09,71;UBERON:0007524,1.08e-08,73;UBERON:0003077,1.84e-08,72;UBERON:0007285,1.84e-08,72;UBERON:0005256,1.42e-07,122;UBERON:0007500,1.98e-07,59;UBERON:0001981,1.98e-07,59;UBERON:0004537,1.98e-07,59;UBERON:0006965,1.98e-07,59;UBERON:0003104,2.62e-07,160;UBERON:0009142,2.62e-07,160;UBERON:0000926,5.10e-07,315;UBERON:0004120,5.10e-07,315;UBERON:0006603,5.10e-07,315;UBERON:0000490,6.57e-07,148 | |||
|phase1_expression=8.17552706717505,3.42560838225573,6.90676580070259,5.00366491765652,1.78784437770915,1.74467704820074,2.53299878168311,2.52687949370732,1.30592814099919,6.63481628554074,21.6318362071453,0.873765488520689,0,1.48519623552056,2.98257638155124,6.05092631806598,7.8350288643117,5.11217063271161,2.92759679274304,0.492484232307152,3.26401105990805,0.313454721478088,3.72106783270374,4.24310717725941,3.26410862946487,0,0,0,0,0,0.154816123316076,4.59710612239464,4.2168828628955,5.9160641626686,0,0,0,6.09394949385065,2.4065333696417,0.868043482863407,0,0,0,0.436194716338694,0.377875943688809,0.970336244751265,3.95129362739664,2.46700732813095,4.02618282163635,29.0569316245372,33.8132132618413,23.8847052187471,12.0660988257816,7.74581620300591,2.70852973188684,1.12945403725563,0.818718450173537,2.02251136000576,9.79468455586888,13.1580901101198,11.5080682643827,5.27762080298746,14.5608470063791,6.39337125799041,3.19230162491442,1.13477044938228,2.4912889959823,23.8686231993906,36.5038042894141,26.062661364614,4.84319602106695,7.36555271975129,6.32924774881769,0,0.850417199860174,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,1.1705341280389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,22.0477882954585,21.5575301573433,9.70471677037519,3.9764297352555,2.43317435151318,1.70162670895322,1.33037638477538,1.14185221401064,1.30979075497713,0,1.11235332835329,0,0.174129737299267,0.132957960518865,0,0,0,0.79504962946682,0.860234595106124,0,3.95715559346807,5.87299210693868,2.47606237746061,3.9709043641994,3.87625138753993,2.49036383880697,1.00416183829401,0.805658634218294,0.760272105718513,0.488124115096339,2.94130464276695,2.43042584364528,1.3394959242612,1.34717623575702,0.563057402416611,0,2.84779697870439,0.549605231791222,0,0,1.3082821564276,9.93943903390637,11.143485026483,54.9498100374858,20.6522366939146,8.86670955495893,8.41016400213461,1.06748995729705,5.67335361359468,0.933633106199299,0.538842688278752,1.9615428373615,1.05950199351452,0,0.234321431833797,7.80400192075801,8.55707732316674,3.58676833324323,2.3486899728753,4.69431538667581,3.79217178096071,1.83738754129404,1.71968044236475,0.723280468230358,4.75201142912821,3.95627086845691,0.910161361938026,0.718618141816238,1.34668891163253,1.50142223846357,6.09541054065202,3.5118209670467,13.7919508109559,6.15976041517047,3.28953331164061,28.5229520745291,6.19316427573846,11.0204588602972,35.7108404340439,9.89304280689013,24.991132384426,10.9808945235638,42.8691883892816,8.08727142837949,38.1174999108613,11.1380377357182,1.2931684545505,53.9614580625254,14.004541653642,14.5822109387019,7.15065156704198,8.18238361772504,4.30206893083506,0,0,0.69716365721711,0.310983165046111,0.504641701751257,0.36497735907583,7.8224766164908,5.14592750554308,6.90674606762403,3.25057549622385,8.66255378003503,0.591534000199219,0.505754070234305,1.92808823906786,0.661763836394364,0.871517776369625,0.71181185733329,0.674156540800822,1.17732879075208,0.38474715694639,0,0,1.6462960453256,0,0,0,0,0,0.983907508344908,2.91665277507493,3.62175941848464,4.49607013030478,0.301586917234893,4.35165692245089,2.28065813717227,1.03993478527958,2.88662684050547,0.811512834825538,6.34006948873437,0.577465791044295,0,0.761016608938393,1.58040879591855,3.43394464837949,0,0,0,15.9347517777521,3.19166043577833,4.39502801451398,1.70161193135412,2.3250715081117,1.53353071666084,0,0,0.207328115540772,0,0.25248486685276,0.126995788584338,0,0,1.71072446022705,0.308482478109971,0.300343057843917,0.285826432630578,1.12131084345361,0,2.0534720029866,7.23921608243556,0,5.917119267892,9.30783408047047,9.36066932202295,2.05765899409714,1.41849132023278,5.32844358032199,0.285955987316295,0,0.823240336780769,2.60588947434988,0.710783897485092,1.58390374586686,3.31583314765545,8.71533458600294,0.99972991182057,0,0,0,26.5983589595657,18.3779097334582,11.4109524032575,17.9528820267798,9.45191083731764,3.58121926479791,0,0.197030760201927,0,0,1.01637849688985,0,0,0.502548796003046,1.91381625495949,0,0,0,0.736148950314839,0,1.89885516589815,6.03115498439341,12.8468871933956,4.41566762095017,9.13703036943163,5.71797589482666,0,2.0694614258501,6.64225598535437,7.55913591020983,8.86212867574445,0.195801157462741,0.343143423810856,0.206768026122887,0,0,2.12189300012382,0,1.81434175997808,10.9167435440262,34.5289439898141,5.05188169979532,13.1983323733372,6.65219423786715,11.0989205589089,5.93672265779964,6.01417805830357,6.03709866064632,12.8118363381542,5.19254429183621,8.13472649219715,2.1754700926492,20.2511535006318,11.7863665837947,4.24813458209045,3.27764102412091,3.8026080338233,4.06079651616671,18.0986042195375,5.49044838423799,1.46139224653261,6.86085587803692,1.13733384070897,1.53084334748864,5.18198198645135,0,5.1479823133332,1.50506932156456,2.54876273045038,1.66215201785745,3.80587083027703,0,0,0,0,0.325378394664303,0.206082023295445,0.27470839445503,0.330037999682352,2.29706215198469,5.20048196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| |||
|short_description=p5@MYOF | |||
}} |
Revision as of 04:13, 11 January 2014
Short description: | p5@MYOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MYOF_5end |
Coexpression cluster: | NA |
Association with transcript: | -259bp_to_ENST00000371489, ENST00000371501, ENST00000371502, NM_013451, NM_133337, uc001kin.2, uc001kio.2, uc001kip.3, uc009xuf.2_5end |
EntrezGene: | MYOF |
HGNC: | 3656 |
UniProt: | F8W8J4C9JCN0Q9NZM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.33e-17 | 76 |
vascular associated smooth muscle cell | 4.49e-12 | 32 |
skin fibroblast | 7.53e-12 | 23 |
embryonic cell | 3.28e-11 | 250 |
smooth muscle cell | 2.56e-09 | 43 |
smooth muscle myoblast | 2.56e-09 | 43 |
mesodermal cell | 3.41e-08 | 121 |
muscle precursor cell | 5.84e-08 | 58 |
myoblast | 5.84e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.84e-08 | 58 |
preadipocyte | 3.62e-07 | 12 |
muscle cell | 5.93e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.11e-13 | 99 |
artery | 3.38e-13 | 42 |
arterial blood vessel | 3.38e-13 | 42 |
arterial system | 3.38e-13 | 42 |
trunk | 3.66e-12 | 199 |
integument | 1.69e-10 | 46 |
integumental system | 1.69e-10 | 46 |
systemic artery | 2.08e-10 | 33 |
systemic arterial system | 2.08e-10 | 33 |
skin of body | 1.12e-09 | 41 |
epithelial vesicle | 1.92e-09 | 78 |
multilaminar epithelium | 2.35e-09 | 83 |
somite | 7.97e-09 | 71 |
presomitic mesoderm | 7.97e-09 | 71 |
presumptive segmental plate | 7.97e-09 | 71 |
dermomyotome | 7.97e-09 | 71 |
trunk paraxial mesoderm | 7.97e-09 | 71 |
dense mesenchyme tissue | 1.08e-08 | 73 |
paraxial mesoderm | 1.84e-08 | 72 |
presumptive paraxial mesoderm | 1.84e-08 | 72 |
trunk mesenchyme | 1.42e-07 | 122 |
epithelial tube open at both ends | 1.98e-07 | 59 |
blood vessel | 1.98e-07 | 59 |
blood vasculature | 1.98e-07 | 59 |
vascular cord | 1.98e-07 | 59 |
mesenchyme | 2.62e-07 | 160 |
entire embryonic mesenchyme | 2.62e-07 | 160 |
mesoderm | 5.10e-07 | 315 |
mesoderm-derived structure | 5.10e-07 | 315 |
presumptive mesoderm | 5.10e-07 | 315 |
unilaminar epithelium | 6.57e-07 | 148 |