FFCP PHASE1:Hg19::chr1:54417667..54417685,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115353 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=28792 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_CU680492,HQ447267_5end | |||
|coexpression_cluster_id=C76 | |||
|description=CAGE_peak_9_at_LRRC42_5end | |||
|id=chr1:54417667..54417685,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;1.55e-98;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.55e-98,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4362;1.48e-40;5!DOID:120;8.32e-09;27!DOID:193;2.67e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.48e-40,5;DOID:120,8.32e-09,27;DOID:193,2.67e-08,29 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;1.55e-98;2!UBERON:0004801;1.55e-98;2!UBERON:0000002;4.27e-34;6!UBERON:0001560;4.27e-34;6!UBERON:0000995;4.22e-13;17!UBERON:0003975;1.85e-12;18!UBERON:0004175;6.74e-11;21!UBERON:0003134;4.53e-08;33!UBERON:0003133;2.32e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,1.55e-98,2;UBERON:0004801,1.55e-98,2;UBERON:0000002,4.27e-34,6;UBERON:0001560,4.27e-34,6;UBERON:0000995,6.74e-11,21;UBERON:0005795,1.80e-10,22;UBERON:0003975,1.80e-10,22;UBERON:0004175,2.15e-09,25;UBERON:0003134,8.21e-07,37;UBERON:0000474,8.21e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0.192190067365106,0,0.2023155617111,0,0,0,0,0.532306030317022,0.869932992075073,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,31.7435262296388,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0.158936578980379,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0.192619830407303,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0.163565394255844,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0.3062454773532,0,0,0,0.205116364240755,0,0,0,0,0,0,0.366857197043358,0.115525666150338,0,0,0,0.0752103283492573,0.40341013740704,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@LRRC42 | |||
}} |
Revision as of 18:36, 10 January 2014
Short description: | p9@LRRC42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LRRC42_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | 0bp_to_CU680492, HQ447267_5end |
EntrezGene: | LRRC42 |
HGNC: | 28792 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.55e-98 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 1.55e-98 | 2 |
cervix epithelium | 1.55e-98 | 2 |
uterine cervix | 4.27e-34 | 6 |
neck of organ | 4.27e-34 | 6 |
uterus | 6.74e-11 | 21 |
embryonic uterus | 1.80e-10 | 22 |
internal female genitalia | 1.80e-10 | 22 |
internal genitalia | 2.15e-09 | 25 |
female reproductive organ | 8.21e-07 | 37 |
female reproductive system | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.48e-40 | 5 |
female reproductive organ cancer | 8.32e-09 | 27 |
reproductive organ cancer | 2.67e-08 | 29 |