FFCP PHASE1:Hg19::chr1:26737292..26737322,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79727 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15986 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H9Z2 | |||
|association_with_transcript=0bp_to_ENST00000254231_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_LIN28A_5end | |||
|id=chr1:26737292..26737322,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.04e-33!7;CL:0000586!3.04e-33!7;CL:0002322!8.39e-25!5;CL:0000540!2.52e-13!6;CL:0000031!2.52e-13!6;CL:0000404!2.52e-13!6;CL:0000047!5.19e-10!8 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.88e-43;7!CL:0000586;1.88e-43;7!CL:0002322;2.83e-32;5!CL:0002321;1.22e-10;15!CL:0000540;1.44e-10;6!CL:0000404;1.44e-10;6!CL:0002563;5.81e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.88e-43,7;CL:0000586,1.88e-43,7;CL:0002322,2.84e-32,5;CL:0000540,1.44e-10,6;CL:0000031,1.44e-10,6;CL:0000404,1.44e-10,6;CL:0000047,4.92e-08,8;CL:0002563,5.72e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.15e-16;10!UBERON:0005564;4.15e-16;10!CL:0000031;1.44e-10;6 | |||
|ontology_enrichment_disease=DOID:3095!2.47e-20!22;DOID:2994!2.47e-20!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.69e-27;22!DOID:2994;3.69e-27;22!DOID:1799;1.15e-07;1!DOID:10165;1.15e-07;1!DOID:1798;1.15e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.69e-27,22;DOID:2994,3.69e-27,22;DOID:1799,1.15e-07,1;DOID:10165,1.15e-07,1;DOID:1798,1.15e-07,1;DOID:0050687,7.45e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000473!5.33e-21!8;UBERON:0003135!4.10e-15!11;UBERON:0000991!2.31e-10!21;UBERON:0009196!2.31e-10!21;UBERON:0009117!2.31e-10!21;UBERON:0005564!2.31e-10!21;UBERON:0004176!7.56e-10!22;UBERON:0003101!1.07e-09!22;UBERON:0000079!1.07e-09!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.17e-13;8!UBERON:0003135;1.45e-09;11!UBERON:0000991;1.52e-07;21!UBERON:0003101;5.01e-07;22!UBERON:0000079;5.01e-07;22!UBERON:0001242;5.81e-07;4!UBERON:0001262;5.81e-07;4!UBERON:0004786;5.81e-07;4!UBERON:0004808;5.81e-07;4!UBERON:0001277;5.81e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.17e-13,8;UBERON:0003135,1.45e-09,11;UBERON:0000991,1.52e-07,21;UBERON:0009196,1.52e-07,21;UBERON:0009117,1.52e-07,21;UBERON:0005564,1.52e-07,21;UBERON:0004176,3.45e-07,22;UBERON:0003101,4.81e-07,22;UBERON:0000079,4.81e-07,22;UBERON:0001242,5.72e-07,4;UBERON:0001262,5.72e-07,4;UBERON:0004786,5.72e-07,4;UBERON:0004808,5.72e-07,4;UBERON:0001277,5.72e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,366.043092094916,422.902490713859,317.558045862394,213.541773331663,416.329403944787,510.603325347086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,0,2.21379189377604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.2934061580486,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.426763987105,56.2780430449271,10.1042055887468,0,0,0,0,0,0,0.451191321234361,0.588187602953219,1.00692952185506,0,0,0,0,1.83758992864123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,232.991899054908,0,0,0,0,0,0,0,499.138525983885,557.034718218797,493.958561916701,0,0,0,0,0,0,0,0,0,0,0,11.4420841944637,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30497145982606,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,175.739391997034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10440093535229,0,0,0,0,0,0,559.16959486907,308.893771941367,89.4491417140745,386.231698232885,253.589317597017,418.029897984009,143.154004935946,0.303114792872958,0.803892390468535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LIN28A | |||
}} |
Revision as of 17:15, 10 January 2014
Short description: | p1@LIN28A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIN28A_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000254231_5end |
EntrezGene: | LIN28A |
HGNC: | 15986 |
UniProt: | Q9H9Z2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.88e-43 | 7 |
germ cell | 1.88e-43 | 7 |
embryonic stem cell | 2.84e-32 | 5 |
neuron | 1.44e-10 | 6 |
neuroblast | 1.44e-10 | 6 |
electrically signaling cell | 1.44e-10 | 6 |
neuronal stem cell | 4.92e-08 | 8 |
intestinal epithelial cell | 5.72e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 4.17e-13 | 8 |
male reproductive organ | 1.45e-09 | 11 |
gonad | 1.52e-07 | 21 |
indifferent external genitalia | 1.52e-07 | 21 |
indifferent gonad | 1.52e-07 | 21 |
gonad primordium | 1.52e-07 | 21 |
external genitalia | 3.45e-07 | 22 |
male organism | 4.81e-07 | 22 |
male reproductive system | 4.81e-07 | 22 |
intestinal mucosa | 5.72e-07 | 4 |
wall of intestine | 5.72e-07 | 4 |
gastrointestinal system mucosa | 5.72e-07 | 4 |
gastrointestinal system epithelium | 5.72e-07 | 4 |
intestinal epithelium | 5.72e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.69e-27 | 22 |
germ cell cancer | 3.69e-27 | 22 |
islet cell tumor | 1.15e-07 | 1 |
endocrine pancreas cancer | 1.15e-07 | 1 |
pancreatic endocrine carcinoma | 1.15e-07 | 1 |
cell type cancer | 7.45e-07 | 143 |