FFCP PHASE1:Hg19::chr1:19403546..19403571,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:19403546..19403571,- | |||
|id=chr1:19403546..19403571,- | |||
|ontology_enrichment_celltype=CL:0002076!4.02e-18!43;CL:0002368!1.20e-16!13;CL:0002621!8.36e-15!3;CL:0002159!5.37e-13!13;CL:0000223!2.26e-12!59;CL:0000575!4.79e-11!2;CL:0000317!8.55e-11!2;CL:1000448!8.55e-11!2;CL:0002308!8.55e-11!2;CL:0002140!8.55e-11!2;CL:0000362!7.49e-10!8;CL:0002077!3.93e-08!33;CL:0000240!1.01e-07!6;CL:0000311!1.01e-07!6;CL:0000079!1.01e-07!6;CL:0000237!1.01e-07!6;CL:0000036!1.01e-07!6;CL:0000357!1.01e-07!6;CL:0000114!1.01e-07!6;CL:0000068!2.77e-07!3;CL:0000069!2.77e-07!3;CL:0000307!2.77e-07!3;CL:0000377!2.77e-07!3;CL:0002231!6.52e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000575;3.58e-57;2!CL:0002159;1.01e-32;14!CL:0002252;1.54e-29;1!CL:0000047;1.65e-15;2!CL:0000317;2.55e-15;2!CL:1000448;2.55e-15;2!CL:0002308;2.55e-15;2!CL:0002140;2.55e-15;2!CL:0000362;1.35e-13;9!CL:0002077;4.65e-13;34!CL:0002621;1.14e-10;3!CL:0000312;4.79e-07;5!CL:0000622;6.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,3.58e-57,2;CL:0002159,9.65e-33,14;CL:0002252,2.37e-29,1;CL:0000317,2.37e-15,2;CL:1000448,2.37e-15,2;CL:0002308,2.37e-15,2;CL:0002140,2.37e-15,2;CL:0002077,7.51e-14,34;CL:0000362,1.31e-13,9;CL:0002621,1.20e-10,3;CL:0000221,6.19e-10,72;CL:0000076,1.09e-07,63;CL:0000312,4.79e-07,5;CL:0000622,6.39e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!8.36e-15!3;UBERON:0001004!1.23e-12!72;UBERON:0003102!9.53e-12!95;UBERON:0000065!9.84e-12!53;UBERON:0000161!4.35e-11!35;UBERON:0002419!8.55e-11!2;UBERON:0007771!8.55e-11!2;UBERON:0003297!8.55e-11!2;UBERON:0001821!8.55e-11!2;UBERON:0003487!8.55e-11!2;UBERON:0001820!8.55e-11!2;UBERON:0005089!8.55e-11!2;UBERON:0005088!8.55e-11!2;UBERON:0004119!5.95e-09!169;UBERON:0000925!5.95e-09!169;UBERON:0006595!5.95e-09!169;UBERON:0001003!1.95e-08!14;UBERON:0007376!1.95e-08!14;UBERON:0007383!1.95e-08!14;UBERON:0001042!2.29e-07!10;UBERON:0009145!2.29e-07!10;UBERON:0000166!2.33e-07!21;UBERON:0000165!3.22e-07!28;UBERON:0000930!3.22e-07!28;UBERON:0001723!3.54e-07!3;UBERON:0001033!3.54e-07!3;UBERON:0010056!3.54e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000964;3.16e-29;4!UBERON:0010409;3.16e-29;4!UBERON:0002419;2.55e-15;2!UBERON:0007771;2.55e-15;2!UBERON:0003297;2.55e-15;2!UBERON:0001821;2.55e-15;2!UBERON:0003487;2.55e-15;2!UBERON:0001820;2.55e-15;2!UBERON:0010313;2.37e-12;10!UBERON:0001043;8.57e-11;3!UBERON:0001949;1.14e-10;3!UBERON:0003102;4.77e-10;50!UBERON:0001801;4.21e-09;14!UBERON:0010371;9.83e-09;31!UBERON:0001003;1.50e-08;15!UBERON:0007376;1.50e-08;15!UBERON:0000019;6.01e-07;19!UBERON:0000047;6.01e-07;19!UBERON:0004088;6.01e-07;19!UBERON:0010230;6.01e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,3.16e-29,4;UBERON:0010409,3.16e-29,4;UBERON:0004348,3.16e-29,4;UBERON:0005427,3.16e-29,4;UBERON:0002419,2.37e-15,2;UBERON:0007771,2.37e-15,2;UBERON:0003297,2.37e-15,2;UBERON:0001821,2.37e-15,2;UBERON:0003487,2.37e-15,2;UBERON:0001820,2.37e-15,2;UBERON:0005089,2.37e-15,2;UBERON:0005088,2.37e-15,2;UBERON:0010313,2.37e-12,10;UBERON:0002342,2.37e-12,10;UBERON:0005062,2.37e-12,10;UBERON:0001043,9.90e-11,3;UBERON:0009143,9.90e-11,3;UBERON:0001949,1.20e-10,3;UBERON:0001801,4.21e-09,14;UBERON:0005085,6.34e-09,31;UBERON:0001003,1.47e-08,15;UBERON:0007376,1.47e-08,15;UBERON:0007383,1.47e-08,15;UBERON:0003102,1.85e-07,99;UBERON:0010371,4.79e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,2.5500670180478,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,4.2222168412885,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.806026704325635,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60279707715243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0.991709492165869,0.384380134730212,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.384888450902048,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872901148395775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.124149428591716,0,0,0,0.435433495793923,0.342233301085281,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:19403546..19403571,- | |||
}} |
Revision as of 16:42, 10 January 2014
Short description: | p@chr1:19403546..19403571, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:19403546..19403571, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 3.58e-57 | 2 |
general ecto-epithelial cell | 9.65e-33 | 14 |
epithelial cell of esophagus | 2.37e-29 | 1 |
sebum secreting cell | 2.37e-15 | 2 |
epithelial cell of sweat gland | 2.37e-15 | 2 |
epithelial cell of skin gland | 2.37e-15 | 2 |
acinar cell of sebaceous gland | 2.37e-15 | 2 |
ecto-epithelial cell | 7.51e-14 | 34 |
epidermal cell | 1.31e-13 | 9 |
gingival epithelial cell | 1.20e-10 | 3 |
ectodermal cell | 6.19e-10 | 72 |
squamous epithelial cell | 1.09e-07 | 63 |
keratinocyte | 4.79e-07 | 5 |
acinar cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cornea | 3.16e-29 | 4 |
eye surface | 3.16e-29 | 4 |
optic eminence | 3.16e-29 | 4 |
corneal primordium | 3.16e-29 | 4 |
skin gland | 2.37e-15 | 2 |
epidermis gland | 2.37e-15 | 2 |
gland of integumental system | 2.37e-15 | 2 |
sebaceous gland | 2.37e-15 | 2 |
skin sebaceous gland | 2.37e-15 | 2 |
sweat gland | 2.37e-15 | 2 |
sweat gland placode | 2.37e-15 | 2 |
sebaceous gland placode | 2.37e-15 | 2 |
neural crest-derived structure | 2.37e-12 | 10 |
neural crest | 2.37e-12 | 10 |
neural fold | 2.37e-12 | 10 |
esophagus | 9.90e-11 | 3 |
esophageal region | 9.90e-11 | 3 |
gingival epithelium | 1.20e-10 | 3 |
anterior segment of eyeball | 4.21e-09 | 14 |
ectodermal placode | 6.34e-09 | 31 |
skin epidermis | 1.47e-08 | 15 |
outer epithelium | 1.47e-08 | 15 |
enveloping layer of ectoderm | 1.47e-08 | 15 |
surface structure | 1.85e-07 | 99 |
ecto-epithelium | 4.79e-07 | 104 |