Personal tools

Coexpression cluster:C4702: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Coexpression_clusters |full_id=C4702_bone_corpus_Endothelial_optic_diencephalon_thalamus_Wilms |id=C4702 }}")
 
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0.37424235919565,0.305214492199239,0.527305210638895,0.172985176324662,0.572728947178995,0.430146422997819,0,0.0233440224928605,0.563565531466814,-0.0156876776669209,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0775279309249418,-0.128203955531532,0,0,0,-0.128203955531532,0.0457057960901966,-0.0475772192712895,0,0.141007203622455,0,0.0845786189636633,-0.128203955531532,-0.128203955531532,-0.128203955531532,0.0627569973835827,0.119194483182506,-0.0721522205140084,-0.128203955531532,-0.0749555504518755,-0.128203955531532,-0.128203955531532,0.057730457053664,0.20304396137448,-0.128203955531532,0.0664960525863381,0,-0.128203955531532,-0.00635085117990972,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0235060314404821,-0.0397228952690118,-0.0110300154435015,-0.0183918256383838,-0.0902563762507918,-0.128203955531532,-0.0606614225142402,-0.128203955531532,0,-0.114396557404963,0,-0.128203955531532,-0.128203955531532,-0.068422096742042,-0.128203955531532,-0.128203955531532,-0.110314486659186,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0919579533226857,-0.128203955531532,-0.103943617054395,0,0,0,-0.044968270066233,-0.0444848515964807,-0.106638746820389,-0.0819708395012087,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0494149541591888,-0.128203955531532,0.312699217037958,0.13131764661742,0,0,0.0661619658591692,0.143036854874504,0.03107978445,-0.128203955531532,0.508319216796662,0,0.335892871293121,0,0.193266156112807,0,0.467828484616072,0.46747647079858,0.613173779370858,-0.128203955531532,0.291687607279827,0.161138710637622,0,-0.128203955531532,0.0118802046094188,0.086271326744772,0,-0.0758596980405309,-0.128203955531532,-0.0047195599132183,-0.0222341667672048,-0.0176805439194306,0.319133653612633,0.343181114234412,0.121467166783851,-0.0394943794111124,0.247099133217323,0.457716825861421,0.245280425003452,0.0247818062003245,0,-0.128203955531532,0.0154423812544636,0.0523039447392876,0,0,0,0.454142902891376,0.268895159439712,0.270500466437968,0,0,0.589421995959627,-0.0553033446094451,-0.128203955531532,0,0,-0.0170972651978658,0.0552918135086323,-0.0298971895424993,0,0.489163158310568,-0.128203955531532,-0.0523324136160156,0,-0.059528099655387,-0.0868967186474554,0,0.00714955517289567,0.196977546917306,0.347121994705848,0.306439856277538,0.407088076759349,0.430707616901028,0.299606251422232,0.0621938859412902,0.298625953296645,0.643377530737741,0.593540328061503,1.01959920429184,0.766560483582683,0.553160362330912,1.05930721623018,0.377756647593468,0.407144079982304,0.693039799558722,0.628821156889924,0.76773216370942,0.275459759021505,0.333974041828206,0.400921190898898,-0.128203955531532,-0.128203955531532,-0.0321186970438895,0.714633816359493,0.0237251750172626,0,0.0687106046728627,0,0,-0.128203955531532,-0.0324533008802028,0.210163845666834,0.0343379836246576,0.0902915351025776,-0.0669937884988386,-0.128203955531532,0.0387122438016911,-0.0102171355503175,0.067826192870904,-0.0146291210616352,0,0,-0.0206881828488954,0.020493796426425,-0.032801426285314,0.0815818795468414,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,0,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0394074027594666,0,0,0,0.0759654774674616,0,-0.0088083799021092,0,-0.00189306469331413,0,-0.128203955531532,-0.115913273770903,-0.00654823127034629,0.233000982852579,0.0416895219742318,-0.128203955531532,0,-0.128203955531532,0.0686929279154093,0,0,0.09615480357529,0.181321357646999,0,0.0487331550125284,-0.128203955531532,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,0.0485609657022036,0,0,-0.0827659732923389,0,-0.035739255471814,-0.0245156230293692,-0.0455241760330061,-0.128203955531532,0.543040856791036,-0.128203955531532,-0.0395979266251712,-0.128203955531532,-0.128203955531532,0,0.149469525794151,0,-0.0778286704212545,-0.120534149927873,-0.128203955531532,-0.128203955531532,-0.0137307808464676,-0.128203955531532,0,0,-0.128203955531532,0.344671928022746,0.20907295212648,0.922949253719648,0.656615863526223,0.965751483338416,0.399504960916149,0.140955376245,-0.128203955531532,-0.128203955531532,-0.068023361045506,-0.128203955531532,-0.128203955531532,-0.0808887236860812,-0.128203955531532,0.145661716022247,0,0.169627978729437,0.312857524608114,0.67733299066315,0.770398255276769,0.490477940523447,-0.101467321187657,0,-0.128203955531532,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.097467334673611,0.0272228504796884,-0.128203955531532,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,0,0.563647430326498,0.368758708873989,0.25193885706924,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,0,-0.108142895964741,-0.117765319703455,0.174725457430346,0.282783388708781,0.340239112040725,0.230383816043656,0,0.233787877442634,0.0594778936894014,0.0749449884140161,0.0860937023834767,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0779435241598344,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.00311201748332918,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,-0.0547168622064434,-0.128203955531532,0,-8.15654660368259e-05,0.180112856811005,0.365619891224635,0.460811753376514,0,-0.128203955531532,-0.128203955531532,0.497664026787042,0.429165302394051,0.107433877051114,0.590180792351643,0.481416435293499,0.513065090223071,0.608395063498634,-0.0114569848388895,-0.00384862358982341,-0.0621561004351746,-0.128203955531532,0,-0.0786527979710879,-0.128203955531532,-0.128203955531532,-0.0810013669313304,-0.116650608021525,-0.128203955531532,-0.128203955531532,-0.0115758425413997,-0.128203955531532,-0.128203955531532,-0.0363389165885383,0.455334073062651,0.400881274049607,0.452368301566641,0.482939735294112,-0.128203955531532,-0.128203955531532,-0.0907006727129219,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0901563266176435,-0.128203955531532,-0.00586406876532557,0.327362332422158,0.248420424351416,0.321306686433338,-0.128203955531532,-0.128203955531532,0.416114259418732,0,-0.065979850611415,-0.0661849731367187,-0.128203955531532,-0.0838914968990423,-0.0693921369587007,-0.128203955531532,-0.0570350444925798,-0.128203955531532,-0.0518584563122683,0,-0.0131018017261396,-0.128203955531532,0,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,-0.115464422334175,-0.07011027573987,0,0,-0.0490260233578553,-0.128203955531532,0,-0.128203955531532,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,0.0192760303843304,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,-0.020041326293318,0,0.0625101298396254,0,0,-0.128203955531532,-0.128203955531532,0,0,-0.128203955531532,-0.070001455798195,-0.0160190008537788,-0.0568270223709865,-0.0574388740381509,-0.0363362431042086,0.175658110585713,-0.0495883212434499,0.00210881198357818,-0.0517658807295085,0.03349349223928,-0.128203955531532,0.397306660445551,-0.128203955531532,-0.128203955531532,-0.0299058069830599,0.186972432825522,-0.0110593532007103,-0.128203955531532,0.00650046557891168,0.0410187745832292,0.0214345486609072,-0.128203955531532,0.12877488213149,-0.128203955531532,1.00889889078966,-0.128203955531532,-0.128203955531532,-0.115288971651367,-0.0696757423023291,0.139835991129454,0,-0.128203955531532,0.118792026166802,-0.128203955531532,0,0.0653642752060842,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.128203955531532,-0.0352288865228397,-0.128203955531532,0.0798291250600273,0.0323702747983423,0.0670147110949639,-0.128203955531532,0.80208099344799,0.583276515901478,0,0.473600564244539,-0.128203955531532,-0.114799444301711,0.637819779538175,0.0777583090353379,0.260742975634657,0.067217514390076,-0.0963198466475525,-0.128203955531532,0,0.568727958599124,0.674257637457638,-0.082369239286355,-0.00448041817934176,0.303633898779924,0.67851553707477,0.133974545873814,0.448282545314564,0.0422874684771159,0,0.117615805682075,-0.117516489755041,-0.128203955531532,-0.128203955531532,0.399096134605878,0,0.95507282314184,0.938593667058716,0.718746821451137,0.508997003470936,0.477776564447811,0.0364132912814638,0.373539599873126,0.243170908194981,0,-0.0360492860303186,1.06154516423557,0.667598440608478,0.729370795323083,1.0163791510151,0.903943655726162,1.19060259189161,1.07093720518728,1.06224452274021,0.852073571187316,-0.0322215897795653,0.250963262793758,0.314253227372862,0.178323682636435,-0.0246133740344228,0.0224337787457786,0.130111338265321,0.120245177400006,-0.128203955531532,0.186940981960665,0,-0.128203955531532,0.323325894375331,0.749298359212475,0.727379393078036,0.687248424974003,0.100458706977994,0.28498945035795,0,-0.00550795853453159,-0.128203955531532,0.190264921024771,0.299999916441319,0.270391967032061,0.408874392301367,0.501382222337095,0.680466957973846,0.739248147295723,0.852251387689508,0.28762966138485,0.906789536785357,0.349929859833597,0.360148020398085,-0.0338095673433002,0.0162408481780942,0.537350909632561,0.699080167496356,0.62582365554129,0.295624565858899,0.296516188610923,-0.128203955531532,-0.128203955531532,-0.00963076223261816,-0.128203955531532,-0.0194328105666225,-0.0718042945750921,-0.128203955531532,-0.111575922257926,-0.128203955531532,0.301600361100789,0.0689224358658181,0,0.00707076021750641,0,0.325541024166837,-0.128203955531532,0.556791462423387,0,-0.110585781353078,0.908284576529906,-0.0459423665553557,0.046587630924191,0.207624638381792,0.152895535788952,-0.069743607543583,0.068437231457886,0.277373747132478,-0.128203955531532,-0.0773400798111578,0.0991211802135009,0.0203100479537453,-0.0849977975635307,-0.108676379447625,-0.0179676859239841,0.635475729315645,0.709821794725513,0.168150298875286,0.36994487371027,-0.0268393409988937,0.50177580901618,0.47969590494979,0.370605278113256,0.152740729276391,0.231190967588025,0.240831603416018,0.53082983941259,0.00543070534670456,0,-0.128203955531532,-0.128203955531532,-0.0732819159094611,0,0.0251128335519337,0.833652586290623,0.600840008587325,0.0647398703344467,0,0,0.677933496039027,0.61800431244606,0.809035223536489,-0.00258130279139993,0.0818108167103227,0.0753447118876535,0.222991777171815,-0.128203955531532,0.0692821453583947,0.308192833341402,0.346925975496747,-0.0298134270622229,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,0.593508671047767,-0.128203955531532,-0.128203955531532,0,-0.128203955531532,0.737188161236495,0.737915830774727,-0.128203955531532,-0.128203955531532,0.747669094360025,0.856153962555524,0.819746203513793,0.267733351927106,0.144643709026244,0.622159295796936,0.0251027875419296,0.778789649794151,0.861874879345739,0.642760606843044,0.710752584795012,0.436452598662362,0.529260431691595,0.792001622839862,0.801799894828093,0.571968626138753,0.716283706714326,0.782478405037321,0.0630778187240776,0.0478646130275492,-0.128203955531532,-0.0802412114613248,-0.0364435310485014,1.0214269982953,0.772502247840035,-0.128203955531532,0.0383524375509258,0,0,0.11599983761493,0.530688964143544,-0.0256393446646181,0.0342686753160286,-0.126555234512541,-0.128203955531532,-0.0640093307467852,-0.128203955531532,-0.0107583426194162,-0.128203955531532,-0.00413256667189416,-0.00695967942987194,0.295506070220244,0,-0.128203955531532,-0.05564208869976,-0.00689640002078881,-0.128203955531532,0,-0.128203955531532,0,0,0,-0.128203955531532,0.0843766322300271,-0.128203955531532,-0.128203955531532,0.0953749727554215,-0.0942240844236444,-0.128203955531532,0.0954458678002273,0.311802934094174,0.285129731411031,0,-0.128203955531532,-0.0291308128608092,-0.128203955531532,-0.128203955531532,0.722036045244474,-0.128203955531532,-0.128203955531532,-0.062413159171033,-0.0662311149825661,-0.128203955531532,-0.128203955531532,0.348899052435976,0,-0.128203955531532,-0.128203955531532,0.0627766961172411,-0.0210757578510973,-0.128203955531532,0.67604206663821,0.189493439515526,0.0396442014328333,0.456065127819723,-0.128203955531532,0.395324544930197,0,-0.128203955531532,0.162723504759812,0.608916413349803,0.635480382532136,0.103610050659122,-0.128203955531532,0.865832952181936,0.695782716019305,0.854981426999259,0.931016077873968,0.490224016195265,0.833717868523357,0.844772957874983,0.82677279512113,0,0,-0.0535784366890006,0.308417400171393,0,0.0997752326672059,0.0139349815589412,0.168361858471741,0,0,-0.0271767112176451,0,-0.0298642563615389,0.824561130696722,0.682535617112576,0.838757320470883,0.852305466460864,0.541141398989981,0.18984326733154,0.352409415850794,0.0847075255352382,0.390273620204116,0.126963161203141,0.241963872248532,0.849406190787872,0.922747726294558,0.222399337512427,0.447632040631292,-0.128203955531532,0.96349624654881,0.739849995632453,0.0399325551831157,0.218469845021194,0.387179665553684,1.00849886703436,-0.128203955531532,0.478397391847502,-0.104393867170206,-0.128203955531532,0.466248078200746,0.0234330626119726,0.00968718259820506,0.346500710041905,0,-0.128203955531532,-0.128203955531532,-0.128203955531532,0.155405081403798,-0.128203955531532,-0.0926888059220897,0.408800220741993,0.389132990693718,-0.0108642437724919,-0.128203955531532,0.334424956828426,-0.128203955531532,-0.0945385105977527,0.0886027082297452,0.341705400837023,0,0.499624144008854,0.991212028875092,0.60232938139875,0.316434287400109,0.42782821979935,0.132794681300055,0.763518997165832,0.0904423417827262,0.0858467613960337,1.03731343590634,0.219270789193517,0.826665540886938,0.778513744249492,0.748880500380947,0.78482254751168,0,0.531844212303188,0.0335248750965739,-0.0143195818225553,-0.00300599485033332,0.00306009501463292,-0.128203955531532,0.0488289603720657,0.163974701329705,0.760366418942743,-0.0701964914161796,0.778729578713482,0.418630886098944,0.365408456866835,0.137352534412557,0.391739241309833,0.361327285921938,0.211063191495853,0,0.837251875297299,0.0421771923324582,-0.0253528261986166,0.0724498256922551,-0.128203955531532,0.272433135696222,0,0.911211483322944,0.839093090213681,0.229617329836445,0.369082370565707,0.0271819376754428,0.267404682992204,0,0.325995473430714,0.67197186805541,0.273888360635212,0.098258449137449,0.311310847699634,0.294978117339824,0.348332365242434,0.249075983195422,0.126096348332777,-0.128203955531532,-0.128203955531532,0,0.342480361443161,0.292782826504722,0.447064322208136,0.43009163700322,0.382874138323306|full_id=C4702_bone_corpus_Endothelial_optic_diencephalon_thalamus_Wilms|id=C4702|ontology_enrichment_celltype=CL:0002139!3.45e-10!24;CL:0000115!1.85e-07!36;CL:0000071!5.07e-07!18;CL:0002546!5.07e-07!18|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0007023!3.17e-31!114;UBERON:0001049!5.50e-27!56;UBERON:0005068!5.50e-27!56;UBERON:0006241!5.50e-27!56;UBERON:0007135!5.50e-27!56;UBERON:0000073!3.04e-25!53;UBERON:0002616!3.04e-25!53;UBERON:0001017!6.22e-23!81;UBERON:0001016!3.05e-22!89;UBERON:0002780!2.90e-21!41;UBERON:0001890!2.90e-21!41;UBERON:0003080!2.90e-21!41;UBERON:0006240!2.90e-21!41;UBERON:0000955!5.60e-21!68;UBERON:0006238!5.60e-21!68;UBERON:0003075!1.24e-19!82;UBERON:0007284!1.24e-19!82;UBERON:0002346!5.27e-19!86;UBERON:0001893!4.43e-18!34;UBERON:0003528!6.16e-18!34;UBERON:0002020!6.16e-18!34;UBERON:0001869!6.56e-17!32;UBERON:0002791!7.20e-17!32;UBERON:0003056!1.03e-13!61;UBERON:0002619!1.89e-13!22;UBERON:0010371!6.79e-13!104;UBERON:0000956!8.65e-13!25;UBERON:0000203!8.65e-13!25;UBERON:0001950!1.99e-12!20;UBERON:0010314!7.71e-12!132;UBERON:0000025!5.22e-10!192;UBERON:0004111!8.23e-10!240;UBERON:0004121!1.88e-07!171;UBERON:0000924!1.88e-07!171;UBERON:0006601!1.88e-07!171;UBERON:0004638!5.07e-07!18;UBERON:0001986!5.07e-07!18;UBERON:0004852!5.07e-07!18;UBERON:0000477!5.08e-07!373;UBERON:0003076!5.79e-07!15;UBERON:0003057!5.79e-07!15|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0191145692128905!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0281333986328825!CTCFL#140690;3:19.7464743589744:0.000129837200555116:0.00172344527056124!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0327753736389724!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032430640388031!EBF1#1879;3:8.906466846569:0.0014152328356098:0.00919302787151713!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0322478753863326!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.00584263029074869!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0109211140038153!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128738860974726!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00668655536474297!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0278282129462136!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00310810614372243!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00545743900658002!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.006320105779682!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0140916534823325|tfbs_overrepresentation=0.147255,0.0586687,0.134243,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00129531,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.0102981,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.000212944,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0028047,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,3.75188e-05,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.00113738,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.198118,0.635872,0.563047,0.00210428,5.636e-05,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.147559,0.330703,0.395854,0.329568,0.53472,0.0724671,0.271958,0.292154,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.463191,0.647576,0.173877,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.155672,0.603208,0.283727,0.314747,0.0567394,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.213592,0.608919,0.18237,0.706298,0.0964442,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.155555,0.513852,0.522083,0.248634,0.281576,0.0271848,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.762864,0.217247,0.412837,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.00743804,0.0451077,0.0747529,0.229003,0.00449125,0.589326,0.154921,0.294698,0.34331,0.477304,0.00514398,0.327108,0.683186,0.278044,0.0263998,0.428671,0.228096,0.336314,0.19763,0.15631,0.20495,0.421464,0.141711,0.420626,0.165111,0.000203002,0.335105,0.144809,0.145539,0.0134194,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.06617,0.155572,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.130283,0.166672,0.206222,0.525396,0.284166,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.0238793,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.0847452,0.0793778,0.00689935,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.0413156,0.0627924,0.381386,0.0179103,0.303939,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.016022,0.127758,0.175785,0.184486,0.169234,0.00395801,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.0376172,0.0286025,2.02725e-05,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.000835367,0.147698,0.141463,0.167267,0.140622,0.0889592,0.0538132,0.28711,0.0473033,0.094881,0.00315933,0.00924871,0.0774373,0.109194,0.128564,0.131452,0.112518,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.389379,0.0232393,0.21727,0.289306,0.119215,0.192475,0.177967,0.188967,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.00352878,3.18684e-05,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.00102818,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.00534625,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.0058211,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.00340589,0.184948,0.156261,0.311847,0.0362615,0.0590944,0.247324,0.178389,0.0257622,0.231073,0.0972686,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.103051,0.36927,0.449036,0.407369,0.231447,0.544776,0.115047,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.0119618,0.0210246,0.432035,0.366326,0.390366,0.48809,0.50058,0.443185,0.522904,2.0991e-06,5.69054e-05,0.227104,0.518585,0.617852,0.38649,0.284625,0.504757,0.55194,0.375373,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.0186777,0.390974,0.149257,0.00120937,0.161598,0.0527155,0.644754,0.496032,0.0795555,0.37357,0.00500957,0.477353,0.069689,0.746954,0.0175763,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.00217346,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.0513026,0.314429,0.181415,0.282286,0.0674279,0.616388,0.408413,0.516511,0.322213,0.656109,0.33942,0.61031,0.387276,0.522605,7.95705e-06,0.000151141,0.222037,0.416621,0.416292,0.462712,0.0115406,0.057399,0.204817,0.122646,0.138871,0.00583733,0.166905,0.19783,0.0833851,0.316453,0.140384,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.351067,0.275347,0.637444,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.035296,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.601877,0.307334,0.0246928,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.036838,0.188263,0.0719199,0.0386691,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.0377035,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.00335066,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435|tfbs_overrepresentation_for_novel_motifs=0.699513,0.869629,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,0.221898,0.820209,0.985163,1.94915,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.242883,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,0.645155,1.78451,0.795576,1.21459,0.534793,0.439574,0.599922,0.137917,1.45286,0.855276,0.567465,0.469078,0.598234,0.777097,0.718382,0.63803,0.901413,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,1.60305,1.29475,1.45259,0.928548,0.650353,0.892517,1.0078,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,1.5923,1.45054,2.87582,0.414196,0.396746,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,9.56978,0.82001,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,0.560075,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,1.7605,1.50815,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,3.97057,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.372828,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,1.33389,6.33019,1.99724,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,2.84192,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,0.951408|tfbs_overrepresentation_jaspar=MA0003.1;3.8806,MA0004.1;0.826076,MA0006.1;0.639288,MA0007.1;0.804807,MA0009.1;1.3275,MA0014.1;5.56064,MA0017.1;0.686276,MA0019.1;0.990656,MA0024.1;1.21731,MA0025.1;1.46617,MA0027.1;2.95767,MA0028.1;0.658629,MA0029.1;1.23771,MA0030.1;1.22561,MA0031.1;1.15713,MA0038.1;0.94098,MA0040.1;1.24388,MA0041.1;0.847069,MA0042.1;0.810843,MA0043.1;1.32783,MA0046.1;1.31611,MA0048.1;0.904546,MA0050.1;0.81185,MA0051.1;0.936307,MA0052.1;1.24796,MA0055.1;1.67416,MA0056.1;0,MA0057.1;0.333427,MA0058.1;1.70328,MA0059.1;2.854,MA0060.1;0.492218,MA0061.1;0.456531,MA0063.1;0,MA0066.1;6.69975,MA0067.1;1.65513,MA0068.1;0.405474,MA0069.1;1.31207,MA0070.1;1.30033,MA0071.1;0.897953,MA0072.1;1.29561,MA0073.1;0.0185922,MA0074.1;0.935474,MA0076.1;0.734647,MA0077.1;1.28751,MA0078.1;1.04495,MA0081.1;0.714712,MA0083.1;1.33535,MA0084.1;1.84562,MA0087.1;1.29304,MA0088.1;2.84236,MA0089.1;0,MA0090.1;0.751469,MA0091.1;0.829044,MA0092.1;0.785956,MA0093.1;0.642957,MA0095.1;0,MA0098.1;0,MA0100.1;0.956299,MA0101.1;0.646932,MA0103.1;0.628063,MA0105.1;2.3269,MA0106.1;0.986396,MA0107.1;0.556367,MA0108.2;1.15387,MA0109.1;0,MA0111.1;0.767139,MA0113.1;1.00436,MA0114.1;0.549955,MA0115.1;1.57693,MA0116.1;0.560723,MA0117.1;1.36676,MA0119.1;0.695578,MA0122.1;1.39371,MA0124.1;1.53432,MA0125.1;1.44766,MA0130.1;0,MA0131.1;1.06461,MA0132.1;0,MA0133.1;0,MA0135.1;1.35921,MA0136.1;0.948776,MA0139.1;0.440097,MA0140.1;0.894983,MA0141.1;0.712476,MA0142.1;1.12317,MA0143.1;1.00455,MA0144.1;0.531867,MA0145.1;0.273764,MA0146.1;0.107247,MA0147.1;0.565108,MA0148.1;1.98824,MA0149.1;0.884158,MA0062.2;0.449458,MA0035.2;0.894194,MA0039.2;3.37171,MA0138.2;1.04628,MA0002.2;0.476938,MA0137.2;0.666381,MA0104.2;1.2307,MA0047.2;2.23118,MA0112.2;2.88736,MA0065.2;0.277623,MA0150.1;0.744617,MA0151.1;0,MA0152.1;0.902317,MA0153.1;1.43021,MA0154.1;2.30945,MA0155.1;2.02721,MA0156.1;0.669101,MA0157.1;1.09377,MA0158.1;0,MA0159.1;2.37721,MA0160.1;0.871361,MA0161.1;0,MA0162.1;4.34338,MA0163.1;4.77883,MA0164.1;1.01792,MA0080.2;0.643061,MA0018.2;0.987913,MA0099.2;0.902716,MA0079.2;3.14419,MA0102.2;1.88331,MA0258.1;2.22591,MA0259.1;0.575594,MA0442.1;0}}
|full_id=C4702_bone_corpus_Endothelial_optic_diencephalon_thalamus_Wilms
|id=C4702
}}

Latest revision as of 14:18, 17 September 2013


Full id: C4702_bone_corpus_Endothelial_optic_diencephalon_thalamus_Wilms



Phase1 CAGE Peaks

Hg19::chr7:86688940..86688951,-p4@KIAA1324L
Hg19::chr7:86688955..86688988,-p1@KIAA1324L
Hg19::chr7:86688990..86689026,-p2@KIAA1324L


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism3.17e-31114
neural tube5.50e-2756
neural rod5.50e-2756
future spinal cord5.50e-2756
neural keel5.50e-2756
regional part of nervous system3.04e-2553
regional part of brain3.04e-2553
central nervous system6.22e-2381
nervous system3.05e-2289
regional part of forebrain2.90e-2141
forebrain2.90e-2141
anterior neural tube2.90e-2141
future forebrain2.90e-2141
brain5.60e-2168
future brain5.60e-2168
neural plate1.24e-1982
presumptive neural plate1.24e-1982
neurectoderm5.27e-1986
telencephalon4.43e-1834
brain grey matter6.16e-1834
gray matter6.16e-1834
cerebral hemisphere6.56e-1732
regional part of telencephalon7.20e-1732
pre-chordal neural plate1.03e-1361
regional part of cerebral cortex1.89e-1322
ecto-epithelium6.79e-13104
cerebral cortex8.65e-1325
pallium8.65e-1325
neocortex1.99e-1220
structure with developmental contribution from neural crest7.71e-12132
tube5.22e-10192
anatomical conduit8.23e-10240
ectoderm-derived structure1.88e-07171
ectoderm1.88e-07171
presumptive ectoderm1.88e-07171
blood vessel endothelium5.07e-0718
endothelium5.07e-0718
cardiovascular system endothelium5.07e-0718
anatomical cluster5.08e-07373
posterior neural tube5.79e-0715
chordal neural plate5.79e-0715


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.13.8806
MA0004.10.826076
MA0006.10.639288
MA0007.10.804807
MA0009.11.3275
MA0014.15.56064
MA0017.10.686276
MA0019.10.990656
MA0024.11.21731
MA0025.11.46617
MA0027.12.95767
MA0028.10.658629
MA0029.11.23771
MA0030.11.22561
MA0031.11.15713
MA0038.10.94098
MA0040.11.24388
MA0041.10.847069
MA0042.10.810843
MA0043.11.32783
MA0046.11.31611
MA0048.10.904546
MA0050.10.81185
MA0051.10.936307
MA0052.11.24796
MA0055.11.67416
MA0056.10
MA0057.10.333427
MA0058.11.70328
MA0059.12.854
MA0060.10.492218
MA0061.10.456531
MA0063.10
MA0066.16.69975
MA0067.11.65513
MA0068.10.405474
MA0069.11.31207
MA0070.11.30033
MA0071.10.897953
MA0072.11.29561
MA0073.10.0185922
MA0074.10.935474
MA0076.10.734647
MA0077.11.28751
MA0078.11.04495
MA0081.10.714712
MA0083.11.33535
MA0084.11.84562
MA0087.11.29304
MA0088.12.84236
MA0089.10
MA0090.10.751469
MA0091.10.829044
MA0092.10.785956
MA0093.10.642957
MA0095.10
MA0098.10
MA0100.10.956299
MA0101.10.646932
MA0103.10.628063
MA0105.12.3269
MA0106.10.986396
MA0107.10.556367
MA0108.21.15387
MA0109.10
MA0111.10.767139
MA0113.11.00436
MA0114.10.549955
MA0115.11.57693
MA0116.10.560723
MA0117.11.36676
MA0119.10.695578
MA0122.11.39371
MA0124.11.53432
MA0125.11.44766
MA0130.10
MA0131.11.06461
MA0132.10
MA0133.10
MA0135.11.35921
MA0136.10.948776
MA0139.10.440097
MA0140.10.894983
MA0141.10.712476
MA0142.11.12317
MA0143.11.00455
MA0144.10.531867
MA0145.10.273764
MA0146.10.107247
MA0147.10.565108
MA0148.11.98824
MA0149.10.884158
MA0062.20.449458
MA0035.20.894194
MA0039.23.37171
MA0138.21.04628
MA0002.20.476938
MA0137.20.666381
MA0104.21.2307
MA0047.22.23118
MA0112.22.88736
MA0065.20.277623
MA0150.10.744617
MA0151.10
MA0152.10.902317
MA0153.11.43021
MA0154.12.30945
MA0155.12.02721
MA0156.10.669101
MA0157.11.09377
MA0158.10
MA0159.12.37721
MA0160.10.871361
MA0161.10
MA0162.14.34338
MA0163.14.77883
MA0164.11.01792
MA0080.20.643061
MA0018.20.987913
MA0099.20.902716
MA0079.23.14419
MA0102.21.88331
MA0258.12.22591
MA0259.10.575594
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CCNT2#90536.336201576962630.003930750035764890.0191145692128905
CTCF#1066435.360256373075030.0064925092527670.0281333986328825
CTCFL#140690319.74647435897440.0001298372005551160.00172344527056124
E2F1#186934.907389214879320.008460985347239390.0327753736389724
E2F6#187635.017155731697390.00791769806886330.032430640388031
EBF1#187938.9064668465690.00141523283560980.00919302787151713
EGR1#195834.988179094810140.008056488137383440.0322478753863326
FOXA1#3169311.08141974938550.000734755275698670.00584263029074869
HMGN3#932438.178547723350590.001827766942164210.0109211140038153
IRF1#365937.63716375356390.002244692747297240.0128738860974726
RAD21#5885310.35503389545630.0009004912073565420.00668655536474297
SIN3A#2594235.408884726815140.006318961977991520.0278282129462136
SMC3#9126315.04493284493280.0002935825420371870.00310810614372243
TAF7#6879311.43306940492390.0006690181981945830.00545743900658002
TCF12#6938310.63446490218640.0008313523990202070.006320105779682
ZBTB7A#5134137.35190930787590.002516255860282270.0140916534823325



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C4702&oldid=3071819"