Personal tools

Coexpression cluster:C2251: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Coexpression_clusters |full_id=C2251_adipose_spinal_substantia_medulla_corpus_Anulus_tenocyte |id=C2251 }}")
 
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0.130718825125147,0.211730698672947,0.192414729939634,0,0.36131532961381,0.13619218658599,0,0.354768937993072,0.225762690496628,0,0,0,0,0.731648078031692,0.53174024937812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275066192297334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268157272959239,0.111449348043638,0.0261280904843202,0.226481050946359,0.350123680360021,0.266347555937035,0,0.0861021576689585,0,0,0,0.338860188074722,0,0,0,0,0,0,0,0,0,0,0.06470644667023,0,0,0,0,0.243380539493244,0.311722668368662,0.452522615763116,0.208429820354313,0.573348309164482,0.252341329636467,0,0,0.0356831182567484,0.0439846034753525,0.0807507706562845,0,0,0,0,0,0,0,0,0.0540033816753664,0,0.0659164972702785,0,0,0,0.0588362978411115,0,0,0.0306050835163469,0,0.0457141349109768,0.0589934099906075,0,0.393840900674355,0.0241110376195271,0.108411627867554,0.076350886652492,0.474105360150109,0,0.599495939234683,0,0.207752120524275,0,0,0.096796362994926,0.113713385417078,0.323923440140686,0,0,0.202457598355995,0,0.093502014084861,0.134081749590731,0.11847333341627,0.102084716499497,0.145224122790862,0,0.074127477864629,0.122825622424809,0.0556835231040465,0.354525021943001,0.156518940562637,0.0650738225586148,0.223434238969231,0.113392780505067,0.097421303547935,0,0,0,0,0,0,0,0,0,0,0,0,0.488680301526372,0.368232031236356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154808141838947,0,0,0.0241060230789031,0.128262532963502,0.0826200127416755,0.341228993373302,0,0,0,0,0,0,0,0,0,0,0,0,0,0.040912657171121,0,0,0,0,0,0,0,0,0,0,0,0.0307366208579214,0,0.330269791775997,0.2149250132237,0,0,0.139825875106435,0,0.0512892538882835,0.152827163597052,0,0,0.170164210852385,0,0,0,0,0.0206910107952029,0,0,0,0.0233366748554251,0,0,0.0293612645698668,0.170842240730263,0.0715362608323278,0,0,0,0,0,0,0,0,0,0,0,0,0.462227968561365,0.471101346733518,0.628917965092769,0,0.0123432457511523,0,0.0457073437982823,0.15944629498888,0,0.154253470262378,0,0.0734870933250891,0.0828614604385468,0.0388294847274804,0,0,0,0,0,0,0.0573705753876325,0,0,0,0.0261813352965385,0.089733847823063,0.00908032338946145,0,0,0.0354918406012271,0.136389636650821,0,0.0238730281222759,0,0,0,0,0,0.0267551882976717,0,0,0,0,0,0,0.127165533945345,0.0779460066694145,0,0,0,0,0,0,0,0,0,0,0,0.387847758930121,0,0,0,0,0,0.0993318844614675,0.186742156183694,0.082252419724203,0,0.384022727122254,0.245673830103118,0.097876286406133,0.0185203277107455,0,0,0,0,0,0.264741366074864,0.114845690176913,0.058309446725767,0,0,0,0.0837094955401952,0,0.10646102314227,0.0378884459482133,0,0.0773548258047185,0.20552121838683,0.125812862157168,0,0,0.0459433090055695,0.0399851975293775,0,0.0763365308398045,0,0.0473601724108001,0,0.0745324991584115,0.0287199675136495,0,0.161391826405101,0.221006873012398,0,0.166980542059153,0.181974143816169,0,0,0,0,0,0,0,0.238620415553711,0.442069798872731,0.0698566296461665,0.130312767515111,0,0,0,0.395788383023152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32949463316005,0,0,0,0,0,0,0.498344612347096,0.837519795301249,0.20715941960878,0,0,0.365288685895754,0.282936054798583,0,0,0,0.0588079028410375,0,0,0,0.622656334828083,0,0,0.617529134712306,0.601295408441801,0,0,0,0.667126125592876,0,0,0,0,0,0.0114562121448651,0.550025813046288,0.633185406272144,0,0.410687892974765,0.442994614439223,0.239787461110351,0,0,0.30960830570849,0.0680099902262517,0,0,0,0.267191755018263,0.0892479947388933,0.092776003344243,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511720296031263,0.414724154877407,0,0,0,1.16871448642102,0.266232776262519,0.671326256864993,0,0,0,0.252651317607602,0.172187014549508,0,0.303800028727464,0,0,0,0,0,0,0,0.0531548449913595,0,0,0,0.2726846060453,0,0,0,0,0.557063439534168,0.114672502877807,0.345791466663089,0.052599005242673,0,0.641625587688715,0,0,0.268065684154701,0,0,0,0,0,0,0,0,0,0,0,0.342588584645784,0.987287114550865,0,0,0,0.401271991438339,0.39565912634138,0.79639599940694,0.467801616768855,0.737916388797353,0.581732894058709,0.67286499466283,0.223695268268029,0,0,0,0,0,0,0.613270199612264,0.916926631927048,0,0,0,0,0,0.664228602548713,0,0.13287458547318,0.279524274768291,0,0,0,0.309842160152356,0.554826767700977,0,0.0941829069861475,0,0.257465878624592,0,0,0,0,0.129877118282232,0,0.61521206618273,0.963668417668496,0,0,0.51064911523321,0.134339901777113,0.107736419860891,0.087489893808421,0,0,0,0.495424014958709,0.511421375300257,0.489135478675614,0.559066061945441,0,0.137778694054377,0.380668357474775,0.673422143559747,0.872603673461076,1.04662405260733,1.03922622351086,0,0,0,0,0,0,0,0.324539472612408,0.083278196541229,0.162101265072234,0.19221309109667,0.0974544165143517,0.551439364635884,0,0.0812363154237805,0.117561082617775,0.0299435435391435,0.0320973123923737,0,0,0,0.102379403318181,0,0.11119726372979,0.0700662088596235,0.203414788658377,0.0725618668317725,0.0644104954448837,0,0.127176351972696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769835847399597,0,0,0,0,0,0,0,0,0,0,0.323176933180938,0,0,0,0,0,0,0,0,0,0,0,0,0,0.065596883249499,0,0.649745747767942,0.583644352171757,0.91713539263619,0.435401494265042,0.0488145990945361,0.582043841986841,0.60773397631108,0.485631059067025,0,0,0,0,0,0,0,0.390953693394813,0.168356424124871,0.250789242335245,0,0,0,0.612022820164608,0.250682963288844,0.881611588418016,0.707352768853809,0,0.09492163366577,0.435441345494229,0,0,0.316264741738924,0.521092225336671,0,0.126019343299033,0.331356699883992,0,0,0.856130499687327,0.635019978873399,0,0,0.329584026874636,0.477955779659246,0,0,0,0,0.308798308184834,0,0,0,0,0.0752910870178885,0.287145721136987,0,0,0,0,0,0,0,0,0,0,0,0.815891954850088,0.698003535225501,0,0.342604128329898,0,0,0.084496149078749,0,0,0,0.236129529948974,0.121669764574556,0,0.390705313457622,0,0.974286662962502,1.24636557419943,0.619569077238101,0.0340794032342478,0.320292610750908,0.472140465914958,0,0,0,0,0.238130540907848,0.223350344823968,1.18535046849864,0,0.679782692720653,0.112925802387992,0.184415109078388,0,0.775443906487415,0.156132999089005,0,0,0,0,0,0,0,0.334218979151594,0,0.626986069060997,1.02532444130195,0.264965472226991,0.216625621687715,0.0135909688377214,0.233333258024584,0,0.44176168270136,0.189126516077153,0.343904022359758,0.263003424867788,0.160345871842621,0.561788999106214,0.411449884505195,0,0,0.233487373192173,0,0,0.268505452989287,0.14826204992358,1.0054161366459,0.558924685861819,0|full_id=C2251_adipose_spinal_substantia_medulla_corpus_Anulus_tenocyte|id=C2251|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0007023!1.07e-53!114;UBERON:0001049!1.16e-27!56;UBERON:0005068!1.16e-27!56;UBERON:0006241!1.16e-27!56;UBERON:0007135!1.16e-27!56;UBERON:0000073!4.64e-25!53;UBERON:0002616!4.64e-25!53;UBERON:0010314!2.80e-22!132;UBERON:0002780!5.86e-22!41;UBERON:0001890!5.86e-22!41;UBERON:0003080!5.86e-22!41;UBERON:0006240!5.86e-22!41;UBERON:0003075!1.84e-21!82;UBERON:0007284!1.84e-21!82;UBERON:0000955!1.38e-19!68;UBERON:0006238!1.38e-19!68;UBERON:0002346!2.01e-19!86;UBERON:0001893!1.02e-18!34;UBERON:0003528!1.06e-18!34;UBERON:0002020!1.06e-18!34;UBERON:0001017!1.50e-18!81;UBERON:0002791!4.82e-17!32;UBERON:0001869!6.36e-17!32;UBERON:0001016!1.25e-15!89;UBERON:0010371!7.66e-15!104;UBERON:0003056!7.92e-15!61;UBERON:0002619!1.98e-14!22;UBERON:0000481!1.73e-13!342;UBERON:0000477!2.18e-13!373;UBERON:0004111!7.99e-13!240;UBERON:0001950!9.23e-13!20;UBERON:0000956!9.27e-12!25;UBERON:0000203!9.27e-12!25;UBERON:0000467!1.53e-11!624;UBERON:0000480!2.04e-11!625;UBERON:0000468!3.16e-11!656;UBERON:0011216!6.30e-11!223;UBERON:0000025!1.93e-10!192;UBERON:0000483!8.76e-10!306;UBERON:0000119!1.22e-09!309;UBERON:0004121!1.73e-09!171;UBERON:0000924!1.73e-09!171;UBERON:0006601!1.73e-09!171;UBERON:0000125!6.22e-09!9;UBERON:0002308!6.22e-09!9;UBERON:0002420!8.03e-09!9;UBERON:0007245!8.03e-09!9;UBERON:0010009!8.03e-09!9;UBERON:0010011!8.03e-09!9;UBERON:0000454!8.03e-09!9;UBERON:0000062!1.17e-08!503;UBERON:0000479!2.52e-08!773;UBERON:0009663!3.40e-07!7;UBERON:0002298!4.43e-07!6;UBERON:0003076!5.84e-07!15;UBERON:0003057!5.84e-07!15|tf_chipseq_enrich=EP300#2033;3:5.0804562946674:0.0114429840539824:0.0418758124536201!RAD21#5885;3:7.76627542159225:0.003341119385872:0.017264158299084|tfbs_overrepresentation=0.191353,0.0774498,0.50138,0.0631091,0.257053,0.0110447,0.0569281,0.510252,0.000955133,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.00443949,0.268949,0.119094,0.186914,0.122514,0.0382352,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.0299044,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.327332,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.0105156,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.0296391,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.0473319,0.124982,0.152417,0.192028,0.0686515,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,2.61451e-05,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.00826774,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.129196,0.15291,0.206234,0.238926,0.00279479,0.000391478,0.1286,0.207017,0.14037,0.0370757,0.0916845,0.0307561,0.0816983,0.00232734,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.00750878,0.545829,0.113754,0.0504034,0.169684,0.690367,0.0880794,0.603871,0.73998,0.100371,0.407767,0.644298,0.420045,0.0114582,0.332539,0.545329,0.00047012,0.389374,0.594055,0.414547,0.489273,0.413223,0.271656,0.720642,0.0678774,0.369161,0.500422,0.147194,0.00680285,0.702495,0.241524,0.000397097,0.234628,0.168228,0.143893,0.101233,0.279946,0.524104,0.467825,0.201843,0.751064,0.00368984,0.624969,0.127765,0.511459,0.0601683,0.322903,0.350886,0.380582,0.012328,0.398372,0.286293,0.606558,0.708425,0.359128,0.395864,0.0065023,0.368633,0.188516,0.682118,0.162437,0.0789041,0.214221,0.00804842,0.464342,0.318915,0.714007,0.235444,0.804772,0.668093,0.840703,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.145459,0.606382,0.250139,0.00342662,0.316925,0.356561,0.210197,0.211506,0.0883859,0.0962508,0.238465,0.341199,0.853221,0.0306084,0.508325,0.00423142,0.0225709,0.656755,0.00879043,0.043578,0.0144019,0.212518,0.0596868,0.0984075,0.0478748,0.753513,0.332526,0.23849,0.0799295,0.429205,0.00197808,0.365653,0.41035,0.784024,0.00989849,0.180014,0.0400268,0.291917,0.421082,0.25441,0.202782,0.307342,0.00663744,0.0124357,0.165503,0.0171365,0.73448,0.419676,0.188259,0.189182,0.477589,0.46699,0.0460871,0.560187,0.058245,0.198207,0.0616078,0.178485,0.000776942,0.175552,0.00873625,0.651295,0.370995,0.360161,0.429696,0.0866206,0.385297,0.706685,0.000413361,0.627185,0.0106614,0.333725,0.119902,0.289666,0.500627,0.16264,0.0233876,0.565545,0.556975,0.265037,0.629795,0.410093,0.53531,0.0664979,0.424526,0.657528,0.356381,0.184395,0.0489035,0.624689,0.206945,0.0520267,0.00378814,0.296994,0.244339,0.117049,0.0786167,0.0185366,0.043986,0.111753,0.0865866,0.436806,0.21267,0.0330909,0.396083,0.734628,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.00372182,0.0445868,0.540322,0.247151,0.011279,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.00107967,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.00469494,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.00273651,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.0179896,0.271662,0.03989,0.171436,0.05892,5.82474e-05,0.268299,0.198844,0.104946,0.00852994,0.207615,0.161213,0.118999,0.0737069,0.357807,0.0752771,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.00213676,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.164404,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.144756,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.0757944,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.20386,0.0465855,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.171375,0.0430331,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.00500232,0.367925,0.0471607,0.163865,0.226359,0.960445,0.881117,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.0210009,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.00159724,0.220353,0.034089,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.21618,0.0323312,0.107021,0.238657,0.20272,0.0142611,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.00888122,0.502211,0.296013,0.649813,0.00804872,0.459994,0.523209,0.548059,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.747471,1.42941e-05,0.509113,0.483077,0.590496,0.23695,0.541914,0.627201,0.938109,0.934991,0.290703,0.254935,0.722684,0.478691,0.360199,0.608176,0.0937029,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.0108102,0.328518,0.187186,0.310552,0.865054,0.0295909,0.829658,0.453065,0.209437,0.55323,0.401218,0.598945,0.882403,0.464001,0.871271,0.579004,0.870272,0.546688,0.860705,0.261575,0.257956,0.264245,0.379063,0.326516,0.16985,0.113006,0.00431716,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.301684,0.39549,0.234254,0.357409,0.599068,0.365184,0.50338,0.620526,0.0958848,0.0563812,0.0187136,0.357704,0.0286876,0.003448,0.884725,0.642173,0.284496,0.512545,0.162017,0.201413,0.829402,0.684899,0.263302,0.00919591,0.180735,0.775168,0.216102,0.0355932,0.109605,0.397869,0.582542,0.02784,0.102502,0.129731,0.0782409,0.0342559,0.454761,0.00397922,0.142363,0.122467,0.00590281,0.261657,0.346776,0.466529,0.187223,0.0208637,0.00959742,0.741477,0.385425,0.00631453,0.0250382,0.386339,0.0849889,0.598787,0.478745,0.611661,0.00716065,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.0519643,0.70712,0.387134,0.559969,0.0105234,0.668972,0.574252,0.0317703,0.346636,0.125876,0.348802,0.00055455,0.579645,0.119749,0.00252179,1.43097e-05,0.355111,0.139532,0.416962,0.264955,0.000136413,0.152547,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.0326819,0.00789472,0.242783,0.0947248,4.66802e-06,0.210656,0.0331645,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.00407337,0.325254,0.266651,0.0460393,0.231754,0.249415,0.283107,0.0453548,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.0025304,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.0395756,0.00865954,0.147872,0.189388,0.293546,0.0238089,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.0036061,0.437467,0.0217216,0.00073028,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.00796989,0.387837,0.233244,0.207281,0.327401,0.195748,0.0429696,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.00673322,0.223773,0.25788,0.181895,0.253768,0.00626086,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.00461365,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.0944985,0.00817441,0.271338,0.032013,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.000477314,0.0874421,0.100355,0.167854,0.000543954,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.0755696,0.433518,0.00121144,0.334474,0.325785,0.257476,0.291176,0.376537,0.0588457,0.229571,0.0105454,0.00844265,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.000212201,0.35674,0.35852,0.318525,0.00192326,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.0926658,0.222091,0.00172179,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,0.450113|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,0.741427,0.534346,0.739643,0.821651,1.02453,1.80003,0.151681,0.706765,0.867962,0.341754,0.809319,0.532789,1.37557,1.05593,0.471262,0.356737,1.85448,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,1.46495,0.682839,2.47734,0.433165,0.344471,0.49475,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.183156,0.53106,1.08066,0.61613,0.822818,0.694903,0.173425,0.538016,0.90714,0.83543,0.699149,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.248021,1.32819,1.6033,0.321165,0.823598,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,1.03184,1.27559,0.109222,1.18341,1.44378,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.354969,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,1.22649,0.12452,1.63159,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.283547,1.62065,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,0.437774,0.234974,0.175846,1.24902,0.997363,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.156682|tfbs_overrepresentation_jaspar=MA0003.1;0.233555,MA0004.1;0.71247,MA0006.1;0.532262,MA0007.1;0.6918,MA0009.1;2.70386,MA0014.1;0.0695829,MA0017.1;0.577281,MA0019.1;0.873355,MA0024.1;1.09684,MA0025.1;1.34373,MA0027.1;2.83281,MA0028.1;0.550763,MA0029.1;1.11704,MA0030.1;1.10506,MA0031.1;1.03735,MA0038.1;0.824639,MA0040.1;1.12314,MA0041.1;0.732902,MA0042.1;0.697662,MA0043.1;1.20635,MA0046.1;1.19471,MA0048.1;0.25531,MA0050.1;0.69864,MA0051.1;0.820063,MA0052.1;1.12718,MA0055.1;2.526,MA0056.1;0,MA0057.1;0.248209,MA0058.1;0.605914,MA0059.1;0.604454,MA0060.1;0.393285,MA0061.1;1.68681,MA0063.1;0,MA0066.1;0.825101,MA0067.1;1.53181,MA0068.1;0.313194,MA0069.1;1.19071,MA0070.1;1.17908,MA0071.1;0.782546,MA0072.1;1.1744,MA0073.1;0.00636811,MA0074.1;0.819248,MA0076.1;0.623864,MA0077.1;1.16637,MA0078.1;0.926725,MA0081.1;0.604638,MA0083.1;1.21381,MA0084.1;1.72172,MA0087.1;1.17185,MA0088.1;0.182167,MA0089.1;0,MA0090.1;0.640115,MA0091.1;0.715356,MA0092.1;1.6149,MA0093.1;0.535768,MA0095.1;0,MA0098.1;0,MA0100.1;0.83965,MA0101.1;1.33363,MA0103.1;0.521546,MA0105.1;0.232357,MA0106.1;0.869173,MA0107.1;1.1497,MA0108.2;1.03412,MA0109.1;0,MA0111.1;0.655276,MA0113.1;0.886811,MA0114.1;0.447443,MA0115.1;1.45393,MA0116.1;2.01976,MA0117.1;1.24497,MA0119.1;1.43218,MA0122.1;1.27173,MA0124.1;1.41151,MA0125.1;1.32534,MA0130.1;0,MA0131.1;0.94608,MA0132.1;0,MA0133.1;0,MA0135.1;1.23748,MA0136.1;0.832277,MA0139.1;0.344952,MA0140.1;0.779643,MA0141.1;0.602484,MA0142.1;1.00381,MA0143.1;0.887001,MA0144.1;1.09982,MA0145.1;0.569905,MA0146.1;0.481,MA0147.1;0.46175,MA0148.1;0.739888,MA0149.1;0.769072,MA0062.2;0.353589,MA0035.2;0.778873,MA0039.2;0.0247757,MA0138.2;0.928035,MA0002.2;0.379056,MA0137.2;0.558189,MA0104.2;0.392359,MA0047.2;0.856092,MA0112.2;0.187982,MA0065.2;1.09513,MA0150.1;0.633493,MA0151.1;0,MA0152.1;0.78681,MA0153.1;1.30799,MA0154.1;1.21162,MA0155.1;0.180766,MA0156.1;0.560797,MA0157.1;0.97481,MA0158.1;0,MA0159.1;0.462502,MA0160.1;0.756582,MA0161.1;0,MA0162.1;0.640035,MA0163.1;0.253219,MA0164.1;0.90014,MA0080.2;1.32578,MA0018.2;0.870662,MA0099.2;0.7872,MA0079.2;0.000248021,MA0102.2;1.75932,MA0258.1;0.418966,MA0259.1;0.471671,MA0442.1;0}}
|full_id=C2251_adipose_spinal_substantia_medulla_corpus_Anulus_tenocyte
|id=C2251
}}

Latest revision as of 12:02, 17 September 2013


Full id: C2251_adipose_spinal_substantia_medulla_corpus_Anulus_tenocyte



Phase1 CAGE Peaks

Hg19::chr13:113633442..113633469,+p7@MCF2L
Hg19::chr3:16216111..16216120,+p4@GALNTL2
Hg19::chr3:16216137..16216203,+p1@GALNTL2
Hg19::chr3:16216210..16216221,+p2@GALNTL2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism1.07e-53114
neural tube1.16e-2756
neural rod1.16e-2756
future spinal cord1.16e-2756
neural keel1.16e-2756
regional part of nervous system4.64e-2553
regional part of brain4.64e-2553
structure with developmental contribution from neural crest2.80e-22132
regional part of forebrain5.86e-2241
forebrain5.86e-2241
anterior neural tube5.86e-2241
future forebrain5.86e-2241
neural plate1.84e-2182
presumptive neural plate1.84e-2182
brain1.38e-1968
future brain1.38e-1968
neurectoderm2.01e-1986
telencephalon1.02e-1834
brain grey matter1.06e-1834
gray matter1.06e-1834
central nervous system1.50e-1881
regional part of telencephalon4.82e-1732
cerebral hemisphere6.36e-1732
nervous system1.25e-1589
ecto-epithelium7.66e-15104
pre-chordal neural plate7.92e-1561
regional part of cerebral cortex1.98e-1422
multi-tissue structure1.73e-13342
anatomical cluster2.18e-13373
anatomical conduit7.99e-13240
neocortex9.23e-1320
cerebral cortex9.27e-1225
pallium9.27e-1225
anatomical system1.53e-11624
anatomical group2.04e-11625
multi-cellular organism3.16e-11656
organ system subdivision6.30e-11223
tube1.93e-10192
epithelium8.76e-10306
cell layer1.22e-09309
ectoderm-derived structure1.73e-09171
ectoderm1.73e-09171
presumptive ectoderm1.73e-09171
neural nucleus6.22e-099
nucleus of brain6.22e-099
basal ganglion8.03e-099
nuclear complex of neuraxis8.03e-099
aggregate regional part of brain8.03e-099
collection of basal ganglia8.03e-099
cerebral subcortex8.03e-099
organ1.17e-08503
tissue2.52e-08773
telencephalic nucleus3.40e-077
brainstem4.43e-076
posterior neural tube5.84e-0715
chordal neural plate5.84e-0715


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.233555
MA0004.10.71247
MA0006.10.532262
MA0007.10.6918
MA0009.12.70386
MA0014.10.0695829
MA0017.10.577281
MA0019.10.873355
MA0024.11.09684
MA0025.11.34373
MA0027.12.83281
MA0028.10.550763
MA0029.11.11704
MA0030.11.10506
MA0031.11.03735
MA0038.10.824639
MA0040.11.12314
MA0041.10.732902
MA0042.10.697662
MA0043.11.20635
MA0046.11.19471
MA0048.10.25531
MA0050.10.69864
MA0051.10.820063
MA0052.11.12718
MA0055.12.526
MA0056.10
MA0057.10.248209
MA0058.10.605914
MA0059.10.604454
MA0060.10.393285
MA0061.11.68681
MA0063.10
MA0066.10.825101
MA0067.11.53181
MA0068.10.313194
MA0069.11.19071
MA0070.11.17908
MA0071.10.782546
MA0072.11.1744
MA0073.10.00636811
MA0074.10.819248
MA0076.10.623864
MA0077.11.16637
MA0078.10.926725
MA0081.10.604638
MA0083.11.21381
MA0084.11.72172
MA0087.11.17185
MA0088.10.182167
MA0089.10
MA0090.10.640115
MA0091.10.715356
MA0092.11.6149
MA0093.10.535768
MA0095.10
MA0098.10
MA0100.10.83965
MA0101.11.33363
MA0103.10.521546
MA0105.10.232357
MA0106.10.869173
MA0107.11.1497
MA0108.21.03412
MA0109.10
MA0111.10.655276
MA0113.10.886811
MA0114.10.447443
MA0115.11.45393
MA0116.12.01976
MA0117.11.24497
MA0119.11.43218
MA0122.11.27173
MA0124.11.41151
MA0125.11.32534
MA0130.10
MA0131.10.94608
MA0132.10
MA0133.10
MA0135.11.23748
MA0136.10.832277
MA0139.10.344952
MA0140.10.779643
MA0141.10.602484
MA0142.11.00381
MA0143.10.887001
MA0144.11.09982
MA0145.10.569905
MA0146.10.481
MA0147.10.46175
MA0148.10.739888
MA0149.10.769072
MA0062.20.353589
MA0035.20.778873
MA0039.20.0247757
MA0138.20.928035
MA0002.20.379056
MA0137.20.558189
MA0104.20.392359
MA0047.20.856092
MA0112.20.187982
MA0065.21.09513
MA0150.10.633493
MA0151.10
MA0152.10.78681
MA0153.11.30799
MA0154.11.21162
MA0155.10.180766
MA0156.10.560797
MA0157.10.97481
MA0158.10
MA0159.10.462502
MA0160.10.756582
MA0161.10
MA0162.10.640035
MA0163.10.253219
MA0164.10.90014
MA0080.21.32578
MA0018.20.870662
MA0099.20.7872
MA0079.20.000248021
MA0102.21.75932
MA0258.10.418966
MA0259.10.471671
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
EP300#203335.08045629466740.01144298405398240.0418758124536201
RAD21#588537.766275421592250.0033411193858720.017264158299084



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C2251&oldid=3069368"