Coexpression cluster:C843: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0.243399265524477,0.22396831935125,0.159052977498503,0.50221551236133,0.239257338110301,0.444937889807283,0.454675096724924,0.30809297908106,0.00476612857976255,0.493036189779067,0.998531043316667,0.505034202074791,0.564341141883469,0.161921138593049,0.213567935469424,0.348823158862351,0.388036658680854,0.432807289546309,0.373245707153486,0.433258800634435,0.554518279127882,0.347982871374782,0.0859176605107616,0.12940106282268,0.21726024222024,-0.513125741733676,-0.533727098538109,-0.521910680792068,-0.372409754335083,-0.570040995468976,-0.291896727019058,0.696291400136487,0.673793499856244,0.397859473497917,-0.551017630979143,-0.524024598391392,-0.614645841598185,-0.39084655845891,-0.419815972651001,-0.461371193105498,-0.287029485215485,-0.324951416176409,-0.392007722429514,-0.387778333548477,-0.353967406800376,-0.322935505355187,-0.370083336098815,-0.333011495281679,-0.337811623316697,-0.327844249346993,-0.360124826534838,-0.316027717697132,-0.358443987551529,-0.378836523487122,-0.284962354816382,-0.3991915255356,-0.367800607694214,-0.341088941903836,-0.397301739953074,-0.330632870543608,-0.363555878343511,-0.371920243596588,-0.348401903766153,-0.337858797577386,-0.386600842059334,-0.38029715779986,-0.384534619310409,-0.265797432013133,-0.299775199899321,-0.29767451582702,-0.329102692391608,-0.435644671766783,-0.353764590274428,-0.166637030209534,-0.211138376171301,-0.205458484875809,-0.456972791026017,-0.469635995727113,-0.547764654653088,-0.28270576015391,-0.321117668461217,-0.296592302741705,-0.519330749232587,-0.350442233449916,-0.510476217790486,-0.393719085015893,-0.442490399341614,-0.548810511464518,-0.4057327393474,-0.492773112804717,-0.505824469938516,-0.595151733704864,-0.539001354220565,-0.698234357249623,-0.46151874883295,-0.498052905115404,-0.665340598630499,-0.665340598630499,-0.665340598630499,-0.57706932763089,-0.542822534713821,-0.693300723871828,-0.627753097805302,-0.565548296763472,-0.665340598630499,-0.523370210017558,-0.613301335335257,-0.542498964703713,-0.545643608171364,-0.533190041665061,-0.436414988241241,-0.442931215744294,-0.635315457182421,-0.728094776581931,-0.70245385620153,-0.597677883766699,-0.693740214825995,-0.617001218901372,-0.670339889338024,-0.545238918520545,-0.493447853512531,-0.489168902725738,-0.50580489496002,-0.545288665611108,-0.633994976133386,-0.500163230496889,-0.693740214825995,-0.551897545152846,-0.613876860487365,-0.615393993655903,0.130318153079143,0.308540217960831,0.403849428194316,0.192779716154162,0.406083566889928,0.256172092144408,0.056494074921366,0.202341444734185,0.131983489665595,0.280635461097723,0.254308759662002,-0.0943384623696647,0.43115085076714,0.407094193827336,0.0766133529719222,-0.0137657740209884,0.077305658234238,-0.352150686941667,-0.385669923804256,-0.357186594883492,0.53889557541059,0.673132904039903,0.52253155458553,0.469918341111742,0.710191369689376,0.650325084960014,0.639025249770347,0.442551124693669,0.337669768255697,0.216614094535636,0.707689516326597,0.599122916164307,0.649532697760753,0.43216725944595,0.75537376931333,0.224916528832029,0.297376997575089,0.394533214254764,0.760617060384291,0.693135618573913,0.64703176117475,-0.693740214825995,-0.693740214825995,0.39132374428171,0.33165228709858,0.366121316013174,0.0316326356226336,-0.000750973067315648,0.3583919679549,0.478919540557775,0.7107256702281,0.610675518825389,0.0270130785090038,0.252798758112087,0.358763701204402,0.260218248891625,0.266082996785467,0.218217386953252,0.349325483949966,0.480190922051612,0.293196272239667,0.270487928314484,0.23364614566937,0.218575648426328,0.136529354349965,0.214546226526881,0.0969868923612683,0.168039781000932,0.21050854072615,0.192165390992433,0.671203486506408,0.151232148010682,0.104452420000117,0.0679692341216316,0.250941236203052,0.359803332982959,0.202822799667365,0.429830282168016,0.0241976386199885,0.25489637648918,0.257655043753606,0.0446007819031889,0.229452066157195,0.0751403936739538,0.405725298183748,-0.02285559602536,0.372092363400553,-0.00614783155967486,0.152820854814121,0.0336681630939385,0.0443338507050457,0.412893494650832,0.374610224099468,0.410944150098439,0.420781090757979,0.44659764513195,-0.184526625859135,-0.232047738551719,-0.0701529061744506,-0.122403736979648,-0.0464414915150149,-0.0626482863626629,0.422912058433091,0.456487853255318,0.570413541246996,0.230220511992805,0.4365751673167,-0.0317892758283062,-0.0709404856587924,-0.0784668344110038,0.0129249016096245,-0.0188890649478995,-0.0903698102358556,-0.023618428941895,-0.0101201486529601,0.0333128873852567,0.633507278628931,0.667635566183463,0.532669440685569,0.690703815387697,-0.320514311612035,-0.208158673410856,-0.191485163177114,-0.614338450231041,-0.148721791423379,0.317918616220733,0.196593411184317,0.482421870983249,0.235212018360337,0.08369046460662,0.237088574529781,0.523119336267722,0.478278430097184,0.10125825295431,0.250829097131217,0.472243841100587,0.345442939232075,0.247997244436079,0.185823804903166,0.244094227965965,-0.206832110047873,0.0450300593146865,-0.0347029706637782,0.407930433328641,0.360038559832742,0.325313417865551,0.0779316676687862,0.237188743104057,0.521550736098306,-0.453667370995178,-0.345508391109837,-0.262318580670775,-0.357863553483442,-0.360838666706196,0.0382312098534947,0.265397512905112,0.335276964291772,0.377636740817215,0.183347825978183,0.104870731469106,-0.0516171687332445,0.247856459963489,0.336000356012438,0.197689815970101,0.135417085038279,0.87567077079898,0.460241666957256,0.318927579343206,0.499291444285066,0.372838877005507,0.479714088824005,0.512025981648563,0.0901033482584318,0.346496885108842,0.410790786593668,0.353339561331647,0.214348876549559,0.369200002106816,0.277085997912826,0.451334314798749,0.438612615401368,0.0355845509982722,-0.229038505145569,-0.153200788676794,0.402431837666754,0.284852844327729,0.10208609630879,0.352884212166096,0.266445098860777,0.319017301858264,-0.417254342135898,-0.512230340900319,-0.622940327180618,-0.441211669052144,-0.169793899666989,-0.212887046501049,-0.0360152782756008,-0.0783137964531769,-0.0715570805746338,-0.796073153763061,-0.582296289749922,-0.802367374295833,0.0155357474671101,0.32209022419206,0.279810269631511,0.309039805611244,0.241275505088942,0.291880895460896,0.143943797701937,0.306384512302735,0.551044185281002,0.370238659006847,0.264344976088277,0.493526882769882,0.0984668868237373,0.450772112472445,0.454766678002259,-0.519730438650204,-0.494515209212527,-0.437504885228661,0.618171591916259,0.787360305352619,0.769844471986554,0.245579694404507,0.0139130722524735,0.364128909546061,0.160874591157806,0.291575459612729,0.406611851151574,0.579647561873663,0.26701767473984,0.403497717242766,0.172156958292992,0.280159560233199,0.427712296557047,-0.115033001873515,0.455837385130254,0.136895776463906,0.174615375237284,0.21785940024066,0.320527173792158,0.449371050712328,0.295628995186895,0.7862394237057,0.606643755606027,0.123525920625363,0.817303687706245,0.687699833203279,0.419889243660743,0.784091776141151,0.55697527789747,0.637425916905025,0.325324134299674,0.533114000235348,0.436713908059617,-0.436421798556156,-0.432558112402861,0.164833060482383,0.339143478947493,-0.0400811748223673,-0.199739008667306,0.0775355187364909,-0.0017364863702279,0.331352889855566,0.298414320191488,0.515762928028388,0.186730210334027,0.281108781456045,0.314408008783904,0.273034415744039,0.093066439849109,0.226797276764804,0.307428636105719,0.239107122657347,0.171692024895847,0.303873062086479,0.02869490832701,0.189893216264078,0.622263822948321,0.0574825893826185,0.470909348861798,0.410800711777538,0.616965760738506,0.449905454110964,0.437606417950622,0.369246426890138,0.273699941772026,0.291872214571753,0.413091446887051,0.585198719544684,0.270551485679509,0.396093860128435,0.610889843761909,0.212276050532964,0.328744904155981,0.293134094892215,0.56547328235915,0.705693896417302,0.553151412714422,0.571644609737387,0.382223148322035,0.745565479551307,0.211348424460699,0.200250804227132,0.488769784552478,0.420628863687109,0.448500229428129,0.422816593272026,0.52673709937284,0.224388756774612,0.524227434196407,0.601938724544266,0.653575271455493,0.206444895162803,0.454875165118888,0.556935227901,0.255195273725346,0.255124044579492,0.243154788249017,0.404336679640201,0.495297597495654,0.179074720357771,0.579058235016906,0.574662286844626,-0.18215221881851,0.492682110833195,0.579894690966617,0.389809865729018,0.197355096415804,-0.347581484756928,-0.365587478509059,-0.305754740979555,-0.481979705481894,-0.419117382768158,-0.436087961209017,-0.494412963178564,-0.289516096973614,0.18762304839821,-0.0690862431228835,-0.13681581294507,-0.403234326976488,-0.635308441053732,-0.640482991580326,-0.474458761482217,-0.438324433421805,-0.409039990833876,-0.332771649869365,-0.358799181595055,-0.418125175154006,-0.383821401013556,-0.553453657177045,-0.345010510859736,-0.278192464943535,-0.543568046152293,-0.419467077643229,-0.526591529356821,-0.414747887177114,-0.351759315649568,-0.397003693257659,-0.431642630673716,-0.425103374014899,-0.214448494595229,-0.296876475443421,-0.109809218953767,-0.44794315627587,-0.474343786411113,-0.228074125775917,-0.0833790904172967,-0.194560081203894,-0.49842469776173,-0.000935092809173339,0.132072844997511,0.121304436604654,0.104171798486541,-0.429521027652944,-0.165444024153019,-0.00207844088663115,-0.200321682141983,-0.151408399807464,-0.0325079741363163,-0.274084957900944,-0.394708533824166,0.0304334966310091,-0.562878963524349,0.524812664427657,0.00745043389133977,-0.246983789984801,-0.383324363299214,-0.178775075303941,-0.364859768912202,0.331099564779437,-0.0673712880861043,-0.299757855200144,-0.245982422654327,-0.0290678838325275,-0.241070911272481,-0.0750908905722177,-0.180083671811417,-0.0256399267283383,-0.226991820951231,-0.428870985894173,-0.294726481490565,-0.204229668336999,-0.518535542073183,-0.301538754149165,-0.582296289749922,-0.382037747449446,-0.44906820883595,-0.223197920409723,-0.356696106216659,-0.254785419269034,-0.169102511825481,0.0603402621792136,-0.0512660811799652,-0.158938150802642,-0.166462087590395,0.130902737814657,0.269331805865552,0.0151218023025911,-0.546041536097281,-0.253537736581264,-0.31934945270999,-0.166079417588987,-0.165057936569202,-0.0692395411625092,-0.315918962702362,-0.449399417156365,-0.0399272075557014,-0.189530597093588,-0.0876311336620311,-0.419386545795737,-0.0126928526554142,-0.0432087259341338,-0.178517585693855,-0.482017482577252,-0.374636591834838,-0.357037990227449,-0.264478294106371,-0.155981608037288,-0.218740324976975,-0.631100303640314,-0.134157806654403,-0.0396184818606053,-0.0786517633279283,-0.168496373610856,-0.314377364435854,-0.0725776751397066,-0.299423444695555,-0.17664626883573,-0.111344607479323,0.0626352916408183,0.0189504949653531,0.0489945600315315,-0.150104668251224,0.16927649252316,0.235361055094829,-0.136304838678759,0.0553231869451729,-0.0141258426627986,0.149952585544251,-0.253509199033022,-0.28577588107786,-0.289316160818615,-0.0607196966459927,-0.200807501119358,-0.187348596786695,0.0778735460086168,0.0476819908385331,-0.335362313495941,-0.277561333204615,-0.0493951524819988,-0.0831605495929831,-0.0867480844536965,-0.235080263267719,-0.127066898198854,-0.200696110521723,-0.29260113173425,-0.125803236419736,-0.0630744803496285,0.0314464809471853,0.104759364143942,0.0119478851351307,-0.0309490781445773,-0.299595723214218,-0.183161551302367,-0.582296289749922,0.212050664622338,-0.473253022535089,-0.0503434068654005,-0.0963541946310341,0.0655997425112167,0.0367876245033062,0.0855435954569443,0.0320969010652378,-0.085567997449074,0.228906197047015,-0.152780583438994,-0.21121381438688,-0.263611549782374,-0.313374057721286,-0.0481443364378809,-0.319480054491163,-0.325994811842907,-0.166685791444247,-0.0862677649559901,-0.148356087847436,-0.0679829571987642,-0.312159087649277,-0.166286925938633,-0.288610825087224,-0.125214890277625,0.0197111235126916,-0.127704226860902,-0.0988859475624898,-0.0353671372418083,-0.0292689071636031,-0.038935628709239,0.0234120486582796,0.074154079120348,0.409113259276504,0.391631399846117,0.309243026161451,0.0854374572455576,-0.161191661669515,0.127073443359241,0.109776335810014,-0.219233268403747,-0.17559339300292,-0.215121775062531,-0.220503630366053,-0.217674626962988,-0.0474545598166416,-0.0363137485870918,-0.301351902490299,-0.198314249759342,-0.288304316949742,-0.367911204917061,-0.638062919331676,-0.136274924042741,-0.181139133531236,-0.0894900543738399,-0.0947058521752138,-0.289627738144416,-0.291136403247473,-0.384544138228706,-0.292747158454174,-0.236276441226191,-0.378823217207069,-0.185813748246588,-0.204722740126131,-0.320166930517888,0.0008004067755871,-0.0315535680808601,-0.147832115359557,0.189089810239981,-0.456834743125003,-0.397632008662156,0.33457424261882,0.267542136020699,0.415161755062594,0.203812203459878,0.253427436322548,0.189850468640719,0.212782844666362,0.289488990531688,0.340555755924238,0.354746056841626,0.318734156214587,-6.07916373459479e-05,0.330099264535834,0.293720103928246,0.379759795008415,0.242800180685957,0.460373324092352,0.466014053294757,0.204498385198214,0.312370519210482,0.310305169584259,0.178457954137961,0.311804839570145,0.369641718585411,0.306582759341881,0.360612413590635,0.211646893561003,0.0299237513250122,0.150646785929275,0.212684937157266,0.119370607937788,0.22565687972713,0.213324415745972,0.236542042389231,0.233752855138596,0.151820023104109,0.201764312210861,0.317442216125754,-0.0857728135602373,-0.0865033748471287,-0.148451736223203,0.0735510613457726,-0.224318236538001,-0.245405676309616,-0.0689347102393605,-0.174574821311131,0.0654689011997704,0.150695462150226,-0.0674590995957479,-0.364770181414235,-0.31053647641486,-0.406454493036112,0.107969183496466,0.108190115193451,-0.0464505788454295,0.0107786799501797,-0.617279256122857,-0.37996856189935,-0.293491011294957,-0.470272150741735,-0.0821334000625367,-0.48101179309724,-0.298389409608753,-0.345692963033095,0.435660087976627,-0.67508964361367,-0.0634064935705589,0.276210746331465,0.274858853959369,-0.33939887468954,-0.427780610361919,-0.259615257815436,-0.161527855253553,-0.360928242783606,-0.247708111000739,-0.257034283135679,-0.361286933276445,-0.0198518860048425,-0.236097581177063,-0.032923934487756,-0.0898918639665147,0.302338513761138,0.0841765007303324,-0.112908464685073,-0.233734744114213,0.0236396387333231,-0.1735429352489,-0.140505974285417,0.0099140830100774,-0.156326840552181,-0.288101477918199,-0.349593669805778,-0.303784428179613,-0.314108628887218,-0.347748778494987,-0.318747393335688,-0.00345704430083925,-0.484193546674001,-0.0440802425328222,-0.442454392229428,-0.539441920496915,-0.414511791495267,-0.478485931063516,-0.0733327298560224,-0.354666848054289,0.0942592667415669,-0.38034353163357,-0.287399433577563,-0.0270997106985635,0.0882881245394918,-0.122350412940117,-0.394715259545267,-0.269285568790819,-0.166506745802292,0.0980217947148088,-0.228506228248665,-0.170833535123616,-0.333908502941016,-0.186612323840829,-0.358174657632763,0.157788772746321,-0.0155061633613647,0.0837741785205721,0.0191310339197459,-0.225359294087271,-0.0314432398804656,-0.114912676204701,-0.250677412382851,-0.0981552442458131,0.242735227116762,0.153891169382922,-0.205363527922128,-0.137344749607782,-0.197005579020983,-0.330259343366706,-0.186114965989835,0.0844701871873664,-0.233787530175841,-0.124410448676276,-0.445366121966858,-0.383050791329637,-0.485878160826036,-0.443570875291792,-0.207930852912639,-0.151533876652354,-0.0917227508364063,-0.241098098251701,-0.147870803243768,-0.22044698057739,-0.228586633901939,-0.203432036260089,-0.115536828310235,0.397813521639638,-0.174882781001585,-0.11797045981032,-0.659702248424878,-0.189215412647541,0.0748347102145603,-0.271934343677112,-0.0525314305049882,-0.291473887058333,-0.198372097011069,-0.173461271676574,-0.158137779947957,-0.303845449623689,-0.0467038625875048,0.333369781272954,0.323916321105829,0.459348830115169,-0.086479855990258,-0.172736198292338,-0.0488593123143703,-0.14476242017444,-0.365813384526329,-0.18321693944072,-0.176346934945008,-0.0943764716506061,-0.306197574991722,-0.339763047103542,-0.226350617373941,-0.0744368858473485,-0.166726359471335,-0.604633241403564,-0.432676438479853,-0.0451369339354684,-0.201467155885201,-0.251838862814856,-0.0542161239661615,-0.0577537253794203,-0.189682421134919,-0.121383666450631,-0.160950984321863,-0.185376466108201,-0.273120806393069,0.149883278844476,0.0823979617041206,0.133489681366162,-0.0487261516105978,-0.0550723078983065,-0.093880754502328,-0.201966545970231,-0.333880451240913|full_id=C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast|gostat_on_coexpression_clusters=GO:0030128!clathrin coat of endocytic vesicle!0.0322402009543343!1175$GO:0030669!clathrin-coated endocytic vesicle membrane!0.0322402009543343!1175$GO:0030122!AP-2 adaptor complex!0.0322402009543343!1175$GO:0030666!endocytic vesicle membrane!0.0322402009543343!1175$GO:0003924!GTPase activity!0.0322402009543343!389;84617$GO:0045334!clathrin-coated endocytic vesicle!0.0322402009543343!1175$GO:0006901!vesicle coating!0.0322402009543343!1175$GO:0048268!clathrin cage assembly!0.0322402009543343!1175$GO:0006900!membrane budding!0.0322402009543343!1175$GO:0005515!protein binding!0.0322402009543343!389;26262;54849;10494;1175;30851$GO:0030132!clathrin coat of coated pit!0.0418403982307954!1175$GO:0016050!vesicle organization and biogenesis!0.047192048562374!1175$GO:0030178!negative regulation of Wnt receptor signaling pathway!0.048998473354561!30851|id=C843|ontology_enrichment_celltype=CL:0002321!4.12e-38!250;CL:0000222!1.14e-36!121;CL:0000548!1.59e-21!679;CL:0000255!1.59e-21!679;CL:0002371!2.19e-21!588;CL:0000183!8.90e-21!59;CL:0000680!1.76e-19!58;CL:0000056!1.76e-19!58;CL:0000355!1.76e-19!58;CL:0000055!3.86e-19!106;CL:0000187!1.03e-18!55;CL:0000192!3.16e-17!43;CL:0000514!3.16e-17!43;CL:0000393!7.96e-17!61;CL:0000211!7.96e-17!61;CL:0000066!5.69e-16!253;CL:0002078!2.53e-15!45;CL:0000213!2.58e-15!58;CL:0000215!2.58e-15!58;CL:0000359!1.12e-14!32;CL:0000115!1.60e-14!36;CL:0000057!9.02e-13!76;CL:0002139!2.33e-12!24;CL:0000071!7.30e-11!18;CL:0002546!7.30e-11!18;CL:0000003!2.97e-09!722;CL:0000076!8.52e-09!63;CL:1000449!1.40e-08!15;CL:1000497!1.21e-07!17;CL:0002518!1.21e-07!17;CL:0002681!1.65e-07!12;CL:0002584!1.65e-07!12|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002049!2.31e-28!78;UBERON:0007798!2.31e-28!78;UBERON:0003914!4.02e-27!117;UBERON:0004872!6.65e-26!83;UBERON:0007503!1.12e-24!78;UBERON:0000055!1.16e-24!68;UBERON:0000490!3.90e-24!148;UBERON:0007500!3.58e-23!59;UBERON:0001981!3.58e-23!59;UBERON:0004537!3.58e-23!59;UBERON:0006965!3.58e-23!59;UBERON:0000475!1.31e-22!264;UBERON:0000486!3.24e-22!83;UBERON:0003104!2.79e-21!160;UBERON:0009142!2.79e-21!160;UBERON:0002100!6.77e-21!199;UBERON:0002329!1.29e-20!71;UBERON:0003059!1.29e-20!71;UBERON:0007282!1.29e-20!71;UBERON:0004290!1.29e-20!71;UBERON:0009618!1.29e-20!71;UBERON:0007524!3.09e-20!73;UBERON:0003077!5.06e-20!72;UBERON:0007285!5.06e-20!72;UBERON:0004535!1.18e-19!109;UBERON:0001009!1.37e-19!112;UBERON:0005256!1.72e-19!122;UBERON:0000119!2.22e-19!309;UBERON:0000483!9.07e-19!306;UBERON:0001637!9.95e-19!42;UBERON:0003509!9.95e-19!42;UBERON:0004572!9.95e-19!42;UBERON:0001134!1.01e-17!62;UBERON:0002036!1.01e-17!62;UBERON:0003082!1.01e-17!62;UBERON:0000468!2.33e-17!656;UBERON:0002385!5.77e-17!64;UBERON:0001015!5.77e-17!64;UBERON:0000383!5.77e-17!64;UBERON:0000467!1.58e-15!624;UBERON:0000480!2.85e-15!625;UBERON:0004573!1.08e-13!33;UBERON:0004571!1.08e-13!33;UBERON:0000481!3.86e-12!342;UBERON:0000477!1.12e-11!373;UBERON:0000487!3.98e-11!22;UBERON:0004638!7.30e-11!18;UBERON:0001986!7.30e-11!18;UBERON:0004852!7.30e-11!18;UBERON:0004111!1.02e-10!240;UBERON:0006914!1.04e-10!25;UBERON:0000926!1.39e-10!315;UBERON:0004120!1.39e-10!315;UBERON:0006603!1.39e-10!315;UBERON:0005423!1.97e-09!581;UBERON:0000922!3.05e-09!592;UBERON:0003102!5.96e-09!99;UBERON:0003103!7.85e-09!68;UBERON:0004211!1.40e-08!15;UBERON:0009773!1.40e-08!15;UBERON:0001231!1.40e-08!15;UBERON:0001285!1.40e-08!15;UBERON:0007684!1.40e-08!15;UBERON:0004208!1.40e-08!15;UBERON:0000353!1.88e-08!15;UBERON:0000025!2.60e-08!192;UBERON:0006555!3.17e-08!16;UBERON:0004819!3.17e-08!16;UBERON:0000947!3.78e-08!21;UBERON:0010191!3.78e-08!21;UBERON:0002050!1.20e-07!564;UBERON:0006554!1.34e-07!47;UBERON:0001225!1.65e-07!12;UBERON:0008987!1.65e-07!12;UBERON:0001008!2.02e-07!48;UBERON:0009569!2.70e-07!112;UBERON:0000923!4.48e-07!560;UBERON:0010316!4.48e-07!560;UBERON:0005291!4.48e-07!560;UBERON:0006598!4.48e-07!560;UBERON:0010317!4.48e-07!560;UBERON:0002532!4.48e-07!560|tf_chipseq_enrich=ATF3#467;3:6.73895235780263:0.00835893577141354:0.0329110643531124!BRF2#55290;1:107.457558139535:0.00926735017471692:0.0350145714817039!CCNT2#905;5:3.16810078848132:0.0122715766979429:0.0444840928380293!CHD2#1106;4:4.13760913364674:0.0113650969219832:0.0416637775083366!CTCF#10664;8:4.28820509846002:4.59406669642002e-05:0.000807335910663656!CTCFL#140690;3:5.92394230769231:0.0119085785576893:0.0433351928915162!E2F1#1869;6:2.94443352892759:0.00701511988615328:0.0296356324646049!E2F6#1876;7:3.51200901218817:0.000845395041948297:0.00637350846647211!EGR1#1958;9:4.48936118532912:4.28342047930016e-06:0.000135562470132615!ELF1#1997;9:3.83228816292678:1.71269377095518e-05:0.000392091242316501!ESR1#2099;4:12.3074413184618:0.000199967480398519:0.00240050617072884!ETS1#2113;6:5.8372565533214:0.000171358751874285:0.0020897403884865!GABPB1#2553;7:4.94737868532752:9.16652307636923e-05:0.00133557826949348!HEY1#23462;9:3.63609993879514:2.70877685450303e-05:0.000578176876982306!IRF1#3659;5:3.81858187678195:0.00546562857545373:0.0247592618864373!PAX5#5079;7:4.66869587182448:0.000134123573520654:0.0017595442651581!POLR2A#5430;10:2.14745317655807:0.000479337749163792:0.004366087143286!RAD21#5885;7:7.24852372681943:7.20863381607108e-06:0.000207686208859765!REST#5978;7:6.75502010128961:1.15734408021362e-05:0.000294593854236973!SIN3A#25942;6:3.24533083608908:0.00422384063048573:0.0201045342998495!SMC3#9126;5:7.52246642246642:0.000245958108351369:0.00267467918347654!STAT1#6772;4:8.28263499887968:0.000902242788343025:0.00662746761652533!TAF1#6872;8:2.67443702859623:0.00155661727806239:0.00988517280211344!TBP#6908;8:2.96541654967711:0.000730287566864471:0.00581729106824487!TCF12#6938;4:4.25378596087457:0.0103111806051884:0.0383016571071728!TFAP2A#7020;5:8.25931718652248:0.000158182952393598:0.00199426235695738!TFAP2C#7022;7:7.56646002690216:5.39952747293911e-06:0.00016488925431178!YY1#7528;10:4.91117074985386:1.22387217331053e-07:7.03080230519133e-06!ZBTB7A#51341;8:5.88152744630072:4.0719212874727e-06:0.000129496768374653!ZNF143#7702;8:10.8007012417823:3.55138054445481e-08:2.36998487336943e-06|tfbs_overrepresentation=0.411972,0.182524,0.605871,0.150384,0.524232,0.67741,0.136302,0.532583,0.104964,0.0831451,0.393776,0.573106,0.502096,0.361626,0.41524,0.191841,0.39743,0.291459,0.165563,0.316944,0.501818,0.377553,0.248068,0.282771,0.131976,0.554695,0.543049,0.271678,0.403871,0.278725,0.534439,0.332112,0.0588503,0.540828,0.205046,0.254859,0.00227901,0.136184,0.347824,0.205554,0.28694,0.0797086,0.395221,0.492309,0.349222,0.115779,0.121196,0.487087,0.325142,0.349923,0.427495,0.169456,0.215332,0.277731,0.522294,0.122412,0.315406,0.549408,0.238047,0.31058,0.094776,0.416928,0.318333,0.231481,0.170596,0.158604,0.17813,0.186397,0.259191,0.456261,0.795596,0.208314,0.267169,0.345428,0.0247035,0.0559282,0.286976,0.138367,0.118858,0.0239712,0.284698,0.575937,0.134775,0.33412,0.682688,0.074351,0.198829,0.542355,0.0975078,0.19427,0.258338,0.15594,0.284049,0.149368,0.257343,0.334576,0.337247,0.426502,0.277069,0.656286,0.179095,0.659577,0.399512,0.1183,0.561462,0.130032,0.206361,0.747274,0.40496,0.281142,0.489357,0.108897,0.417236,0.0577447,0.299336,0.108144,0.0662012,0.17668,0.392833,0.25314,0.455514,0.55321,0.39542,0.258409,0.302313,0.477418,0.271588,0.0484658,0.254556,0.383168,0.185151,0.22839,0.178312,0.0739549,0.361175,0.317054,0.200322,0.172836,0.10595,0.0131235,0.0739229,0.365582,0.532426,0.43183,0.086538,0.212944,0.293085,0.254195,0.12401,0.349014,0.172122,0.403708,0.485418,0.0858906,0.135403,0.340875,0.228181,0.578624,0.162172,0.10806,0.577411,0.283786,0.338614,0.413198,0.288122,0.332708,0.127319,0.365006,0.128294,0.712634,0.483272,0.389782,0.157321,0.169327,0.242471,0.269962,0.395914,0.487726,0.480664,0.11392,0.438191,0.353055,0.0884684,0.335943,0.2253,0.3441,0.490255,0.127753,0.250503,0.470294,0.314612,0.499075,0.354188,0.579402,0.328649,0.148473,0.23785,0.187196,0.208233,0.32106,0.267881,0.187519,0.0991267,0.188112,0.38677,0.632499,0.655419,0.422468,0.537062,0.480474,0.144874,0.307452,0.349806,0.329227,0.71331,0.460609,0.450032,0.298612,0.194981,0.303923,0.399643,0.788411,0.43197,0.443035,0.225677,0.363167,0.392435,0.258923,0.187678,0.186071,0.00249676,0.221635,0.132786,0.233018,0.285467,0.278261,0.148932,0.638546,0.448494,0.55339,0.489092,0.760879,0.291976,0.251108,0.337716,0.387685,0.246793,0.326065,0.788808,0.339574,0.438653,0.49468,0.495874,0.291007,0.291167,0.440037,0.31486,0.528373,0.213694,0.556528,0.191903,0.135796,0.448218,0.366768,0.110483,0.245583,0.245846,0.27526,0.34219,0.230285,0.662906,0.195831,0.624772,0.138074,0.26059,0.121285,0.371785,0.946652,0.784881,0.575512,0.965524,0.5209,0.51935,1.40759e-06,0.394983,0.842591,0.63603,0.860606,0.78979,0.127786,0.895005,0.737741,0.500455,0.736255,0.921949,0.104063,0.652847,0.68392,0.252038,0.815061,0.555259,0.35967,0.498981,0.777359,0.487515,0.54858,0.321859,0.737991,0.56004,0.55373,0.793397,0.613577,0.270106,0.243467,0.443781,0.78653,0.833179,0.647561,0.622751,0.660529,0.698033,0.643272,0.71925,0.569672,0.207201,0.812648,0.671202,0.716315,0.943481,0.319111,0.862105,0.943028,0.536422,0.684934,0.63531,0.304408,0.206523,0.0274996,0.819373,0.48888,0.0562914,9.63312e-06,9.18079e-05,0.65821,0.593166,0.495706,0.414063,0.922438,0.651297,0.0495127,0.412148,0.431373,0.44616,0.61437,0.6679,0.628366,0.447928,0.206535,0.223539,0.493913,0.804773,0.208786,0.169242,0.83049,0.716168,0.928522,0.930974,0.318162,0.560592,0.71363,0.75598,0.142604,0.228163,0.57975,0.274765,0.0318487,0.0313318,0.324237,0.75385,0.173328,0.314821,0.733016,0.532932,0.662427,0.10496,0.845253,0.578099,0.744999,0.519991,0.43253,0.529004,0.83865,0.376459,0.542897,0.225906,1.12697e-07,0.743447,0.406331,0.408019,0.802743,0.209697,0.0157344,0.871716,0.620489,0.424353,0.146977,0.388299,0.632209,0.382825,0.292464,0.490027,0.686213,0.672526,0.754378,0.704853,0.703747,0.367611,0.902811,0.915134,0.67258,0.637646,0.773449,0.574738,0.517852,0.834529,0.778397,0.875588,0.021349,0.536913,0.452139,0.970221,0.57077,0.280976,0.748774,0.501197,0.301564,0.399242,0.33024,0.102243,0.43991,0.596911,0.788221,0.585622,0.503617,0.267443,0.185106,0.916378,0.634956,0.758797,0.729516,0.761963,0.363391,0.822402,0.0235264,0.0071273,0.135325,0.214215,0.173851,0.509775,0.23715,0.179332,0.405204,0.569466,0.531903,0.857717,0.0145957,0.508221,0.326782,0.679712,0.137899,0.70026,0.362844,0.382976,0.31396,0.655017,0.1944,0.00605645,0.0584635,0.701124,0.0253057,0.807914,0.146713,0.461789,0.333461,0.307972,0.269627,0.260877,0.440384,0.314525,0.138876,0.0129098,0.355801,0.369332,0.18665,0.512058,0.757654,0.157089,0.250573,0.205529,0.488495,0.325128,0.562014,0.390411,0.515911,0.376651,0.501939,0.151764,0.171125,0.00210802,0.36595,0.47503,0.493277,0.127871,0.263426,0.283652,0.0370288,0.56769,0.314351,0.658042,0.0159542,0.470608,0.397749,0.547278,0.0967614,0.375094,0.140855,0.164124,0.542033,0.425497,0.242079,0.289413,0.441091,0.355638,0.271481,0.174207,0.303594,0.0123516,0.388852,0.0478428,0.202693,0.547567,0.564171,0.243065,0.231042,0.118074,0.511132,0.171574,0.237076,0.175309,0.132555,0.110571,0.123803,0.256803,0.463308,0.526744,0.153887,0.135551,0.456247,0.106051,0.0154529,0.562338,0.125614,0.185352,0.540584,0.353062,0.319022,0.321942,0.267985,0.0922004,0.0533324,0.405772,0.123725,0.262911,0.171937,0.404613,0.622957,0.557671,0.504704,0.373984,0.234869,0.594282,0.676166,0.231968,0.468003,0.247799,0.48957,0.394344,0.412992,0.398555,0.456726,0.396589,0.266963,0.128165,0.67635,0.149158,0.282725,0.00413593,0.378291,0.235602,0.319841,0.367901,0.374858,1.39123e-05,0.140248,0.162583,0.294593,0.157267,0.191637,0.230272,0.279473,0.404631,0.108968,0.22657,0.660939,1.95787e-05,0.971281,0.55805,2.56004e-05,0.345014,0.160198,0.479648,0.274012,0.179342,0.150014,0.233292,0.188879,0.47404,0.0330587,0.218579,0.570357,0.68237,0.113765,0.36072,0.47356,4.04472e-11,2.53818e-15,0.537364,0.198591,0.317505,0.20738,0.318705,0.155403,0.28528,0.535959,0.230462,0.144238,0.322438,0.215644,0.210984,0.426136,0.120206,0.377654,0.142291,0.16868,0.332605,0.277625,0.132162,0.308973,0.56623,0.178172,0.589292,0.23158,0.310821,0.423653,0.163768,0.559931,0.300338,0.732963,0.469054,0.750871,0.421894,0.194062,0.507323,0.415,0.000726103,0.431432,0.220174,0.274822,0.187056,0.405162,0.419696,0.289311,0.429656,0.463283,0.512016,0.388586,0.0569338,0.619193,0.312927,0.344554,0.253271,0.738717,0.329845,0.328599,0.49772,0.472883,0.28263,0.640164,0.615079,0.396379,0.295573,0.0789966,0.305672,0.329653,0.0826755,0.458123,0.271514,0.946904,0.456073,0.154713,0.246465,0.494232,0.43242,0.353865,0.427809,0.183756,0.244778,0.480538,0.559853,0.218699,0.0324588,0.000138519,0.115301,9.73434e-05,0.373995,0.137664,0.0836341,0.00260966,0.454236,0.862888,0.0324921,0.584173,0.125881,0.854868,0.785712,0.843029,0.862689,0.5197,0.81476,0.775793,0.0987034,0.797945,0.329297,0.263385,0.122855,0.798727,0.807884,0.892689,0.203578,0.857974,0.915143,4.10603e-06,1.07867e-13,0.576288,0.100533,0.829644,0.484236,0.672575,0.0323102,0.500501,0.150712,0.679307,0.45002,0.612763,0.677516,0.160091,0.885602,0.74495,0.162586,0.630525,0.86082,0.605312,1.43086e-06,0.492011,0.0154167,0.189164,0.444299,0.186848,0.135826,0.197437,0.000147993,0.461743,5.03167e-07,0.367303,0.000850102,0.00276864,0.000608092,0.176229,0.525677,0.535663,0.696179,0.0781485,0.842795,0.419104,0.80035,0.432068,0.398215,0.829626,0.286066,0.715888,0.181328,0.44921,0.217921,0.347515,0.671987,0.0612445,0.133405,0.486888,0.668993,0.000762573,0.218274,0.826195,0.225977,0.726487,0.475852,0.748955,0.20902,0.804619,0.914966,3.5131e-09,0.473828,0.204536,0.834104,0.833792,0.342462,0.0153363,0.327505,0.534174,0.59603,0.39248,0.00167649,0.455938,0.520391,0.251906,0.718663,0.177496,0.473785,0.740625,0.789652,0.448942,0.522835,0.780483,0.25328,0.808423,0.192231,0.226545,0.53157,0.000122025,0.209143,0.860856,0.763408,0.658205,0.0565678,0.703901,0.601385,0.787244,0.705001,0.700795,0.665244,0.224107,0.421039,0.618341,0.800335,0.870092,0.415079,0.563598,0.42282,0.518685,0.507693,0.874718,0.811064,0.705956,0.337469,0.670798,0.146743,0.881728,0.817382,0.654945,0.783476,0.290837,0.801753,0.637223,0.773185,0.749346,0.167945,0.0401085,0.804399,0.740437,0.713696,0.695285,0.965046,0.535337,0.476313,0.236882,0.660591,0.535113,0.108025,0.503913,0.631577,0.501058,0.220257,0.641475,0.446439,0.506723,0.447516,0.562098,0.540386,0.269945,0.284002,0.454236,0.620409,0.470098,0.626018,0.53945,0.587396,0.48269,0.51191,0.564853,0.205997,0.751808,0.710655,0.559441,0.521951,0.498061,0.355143,0.523646,0.10457,0.278571,0.35692,0.483693,0.575859,0.663478,0.257808,0.374056,0.541075,0.612576,0.567518,0.207337,0.54127,0.644166,0.329711,0.408394,0.580521,0.445508,0.215356,0.459939,0.122652,0.203837,0.163644,0.143933,0.647708,0.0405712,0.421304,0.429455,0.347441,0.292694,0.317977,0.185106,0.555523,0.437378,0.563762,0.515166,0.357319,0.632866,0.34707,0.485196,0.440503,0.26112,0.41993,0.557752,0.356596,0.492927,0.495033,0.221402,0.630984,0.636345,0.532147,0.551524,0.539507,0.399497,0.510758,0.0722036,0.33694,0.208477,0.610026,0.469149,0.525556,0.394627,0.518957,0.233702,0.432878,0.373963,0.260574,0.568369,0.467238,0.477159,0.288135,0.52892,0.351361,0.0994595,0.559725,0.033888,0.528779,0.313572,0.0149348,0.168268,0.420832,0.237199,0.129411,0.0150049,0.723393,0.636312,0.546774,0.499966,0.222747,0.503708,0.246187,0.291231,0.198269,0.351675,0.197483,0.308086,0.20448,0.232324,0.368317,0.0576659,0.139615,0.206257,0.268704,0.117319,0.383259,0.533346,0.689269,0.675716,0.0560961,0.399175,0.638663,0.258913,0.171324,0.576995,0.116454,0.622646,0.479007,0.671084,0.640709,0.375599,0.116593,0.536945,0.523194,0.676017,0.593153,0.730416,0.336551,0.559521,0.570279,0.335207,0.514691,0.506629,0.668131,0.30461,0.616624,0.450988,0.571064,0.279276,0.733696,0.573814,0.182763,0.285349,0.2588,0.719228,0.46627,0.438198,0.65176,0.217989,0.650689,0.298817,0.567905,0.475347,0.434688,0.555097,0.621443,0.536392,0.775775|tfbs_overrepresentation_for_novel_motifs=0.76751,1.9417,0.273994,0.404877,0.237701,0.403356,0.474413,0.434224,0.138703,1.04851,0.375531,0.515448,1.16754,0.46359,0.236531,0.256724,0.68716,0.191625,0.371758,0.400542,0.274046,2.5877,1.02534,0.233338,0.844704,2.28298,0.0930454,1.02097,1.94395,0.590419,0.355553,0.722879,0.958783,1.17821,1.1315,0.0928746,0.593726,0.404426,0.186493,2.52061,0.207288,0.340749,0.302519,0.235234,1.62511,0.814459,0.47544,0.365597,0.116302,0.240465,0.550604,0.486559,0.468946,0.797754,0.947672,0.466348,0.244111,1.11117,0.994052,0.434711,0.762758,1.20168,0.139078,0.660336,1.23797,0.627106,1.0348,1.4,0.712787,1.2388,2.39225,0.144996,0.210881,0.945703,1.68253,1.08678,0.292851,1.55336,0.709631,0.309107,0.11972,0.659298,0.49429,0.142768,0.89511,6.3077,0.175904,0.0795497,0.575506,1.4989,1.12715,0.868602,0.739223,0.171001,0.238337,0.18161,0.368981,0.780743,0.579925,0.896538,0.187593,0.733724,0.775299,0.690713,0.616014,0.970906,0.675372,0.460348,0.31439,1.19204,0.283874,0.772599,0.269151,0.384185,1.07963,0.204477,2.50286,0.354459,0.624851,0.515375,0.937551,0.57318,0.400807,0.504966,1.18924,0.644741,0.468435,0.744085,0.979528,0.182384,0.869279,0.358161,0.993705,0.50181,1.13991,0.0752959,0.350108,0.394712,1.09788,1.95265,1.55112,1.06096,0.470062,0.777301,0.617705,0.42776,0.601672,1.79367,0.337738,0.503344,3.35427,2.66605,0.869654,0.821366,0.477214,1.26919,0.560015,0.225815,0.314669,1.4338,1.05976,0.851493,0.708865,0.793294,0.633206,0.493542,0.931981,0.473159,7.52033|tfbs_overrepresentation_jaspar=MA0003.1;14.4878,MA0004.1;0.380329,MA0006.1;0.665232,MA0007.1;2.55746,MA0009.1;0.828613,MA0014.1;7.41786,MA0017.1;0.270554,MA0019.1;0.520264,MA0024.1;0.725404,MA0025.1;0.960689,MA0027.1;2.43535,MA0028.1;0.25013,MA0029.1;0.744375,MA0030.1;0.733118,MA0031.1;0.669876,MA0038.1;1.20033,MA0040.1;0.750125,MA0041.1;0.397617,MA0042.1;0.367902,MA0043.1;0.828925,MA0046.1;0.817858,MA0048.1;0.830349,MA0050.1;0.368721,MA0051.1;0.473017,MA0052.1;0.753928,MA0055.1;0.577037,MA0056.1;0,MA0057.1;0.802927,MA0058.1;0.293055,MA0059.1;0.291897,MA0060.1;0.848451,MA0061.1;0.757837,MA0063.1;0,MA0066.1;0.477449,MA0067.1;1.1435,MA0068.1;0.631708,MA0069.1;0.814052,MA0070.1;0.803003,MA0071.1;0.440254,MA0072.1;0.798564,MA0073.1;1.91004,MA0074.1;0.4723,MA0076.1;0.307383,MA0077.1;0.790956,MA0078.1;0.568317,MA0081.1;0.292043,MA0083.1;0.836033,MA0084.1;1.32998,MA0087.1;0.79615,MA0088.1;2.74176,MA0089.1;0,MA0090.1;0.320494,MA0091.1;0.382762,MA0092.1;0.347826,MA0093.1;0.238771,MA0095.1;0,MA0098.1;0,MA0100.1;0.49029,MA0101.1;0.678051,MA0103.1;0.228129,MA0105.1;1.60143,MA0106.1;0.516528,MA0107.1;1.01551,MA0108.2;0.666881,MA0109.1;0,MA0111.1;0.885497,MA0113.1;0.532314,MA0114.1;0.174997,MA0115.1;1.06753,MA0116.1;0.536665,MA0117.1;0.865782,MA0119.1;0.760742,MA0122.1;0.891407,MA0124.1;1.0263,MA0125.1;0.942948,MA0130.1;0,MA0131.1;0.585907,MA0132.1;0,MA0133.1;0,MA0135.1;0.858623,MA0136.1;0.483775,MA0139.1;2.34656,MA0140.1;0.437738,MA0141.1;0.290336,MA0142.1;0.638837,MA0143.1;0.532484,MA0144.1;0.163394,MA0145.1;0.332712,MA0146.1;8.98507,MA0147.1;0.543675,MA0148.1;0.403564,MA0149.1;0.428597,MA0062.2;0.366815,MA0035.2;0.437071,MA0039.2;9.67447,MA0138.2;0.569505,MA0002.2;0.407187,MA0137.2;0.255808,MA0104.2;0.428616,MA0047.2;0.504873,MA0112.2;6.91351,MA0065.2;0.147044,MA0150.1;0.315136,MA0151.1;0,MA0152.1;0.443956,MA0153.1;0.926242,MA0154.1;3.28929,MA0155.1;0.866026,MA0156.1;0.257809,MA0157.1;0.612166,MA0158.1;0,MA0159.1;0.185458,MA0160.1;0.417847,MA0161.1;0,MA0162.1;7.09323,MA0163.1;9.65096,MA0164.1;0.544294,MA0080.2;0.238846,MA0018.2;0.517858,MA0099.2;0.444294,MA0079.2;15.1741,MA0102.2;1.36707,MA0258.1;0.919347,MA0259.1;0.560522,MA0442.1;0}} | ||
| | |||
}} |
Latest revision as of 11:32, 17 September 2013
Full id: C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0030128 | clathrin coat of endocytic vesicle | 0.0322402009543343 |
GO:0030669 | clathrin-coated endocytic vesicle membrane | 0.0322402009543343 |
GO:0030122 | AP-2 adaptor complex | 0.0322402009543343 |
GO:0030666 | endocytic vesicle membrane | 0.0322402009543343 |
GO:0003924 | GTPase activity | 0.0322402009543343 |
GO:0045334 | clathrin-coated endocytic vesicle | 0.0322402009543343 |
GO:0006901 | vesicle coating | 0.0322402009543343 |
GO:0048268 | clathrin cage assembly | 0.0322402009543343 |
GO:0006900 | membrane budding | 0.0322402009543343 |
GO:0005515 | protein binding | 0.0322402009543343 |
GO:0030132 | clathrin coat of coated pit | 0.0418403982307954 |
GO:0016050 | vesicle organization and biogenesis | 0.047192048562374 |
GO:0030178 | negative regulation of Wnt receptor signaling pathway | 0.048998473354561 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 14.4878 |
MA0004.1 | 0.380329 |
MA0006.1 | 0.665232 |
MA0007.1 | 2.55746 |
MA0009.1 | 0.828613 |
MA0014.1 | 7.41786 |
MA0017.1 | 0.270554 |
MA0019.1 | 0.520264 |
MA0024.1 | 0.725404 |
MA0025.1 | 0.960689 |
MA0027.1 | 2.43535 |
MA0028.1 | 0.25013 |
MA0029.1 | 0.744375 |
MA0030.1 | 0.733118 |
MA0031.1 | 0.669876 |
MA0038.1 | 1.20033 |
MA0040.1 | 0.750125 |
MA0041.1 | 0.397617 |
MA0042.1 | 0.367902 |
MA0043.1 | 0.828925 |
MA0046.1 | 0.817858 |
MA0048.1 | 0.830349 |
MA0050.1 | 0.368721 |
MA0051.1 | 0.473017 |
MA0052.1 | 0.753928 |
MA0055.1 | 0.577037 |
MA0056.1 | 0 |
MA0057.1 | 0.802927 |
MA0058.1 | 0.293055 |
MA0059.1 | 0.291897 |
MA0060.1 | 0.848451 |
MA0061.1 | 0.757837 |
MA0063.1 | 0 |
MA0066.1 | 0.477449 |
MA0067.1 | 1.1435 |
MA0068.1 | 0.631708 |
MA0069.1 | 0.814052 |
MA0070.1 | 0.803003 |
MA0071.1 | 0.440254 |
MA0072.1 | 0.798564 |
MA0073.1 | 1.91004 |
MA0074.1 | 0.4723 |
MA0076.1 | 0.307383 |
MA0077.1 | 0.790956 |
MA0078.1 | 0.568317 |
MA0081.1 | 0.292043 |
MA0083.1 | 0.836033 |
MA0084.1 | 1.32998 |
MA0087.1 | 0.79615 |
MA0088.1 | 2.74176 |
MA0089.1 | 0 |
MA0090.1 | 0.320494 |
MA0091.1 | 0.382762 |
MA0092.1 | 0.347826 |
MA0093.1 | 0.238771 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.49029 |
MA0101.1 | 0.678051 |
MA0103.1 | 0.228129 |
MA0105.1 | 1.60143 |
MA0106.1 | 0.516528 |
MA0107.1 | 1.01551 |
MA0108.2 | 0.666881 |
MA0109.1 | 0 |
MA0111.1 | 0.885497 |
MA0113.1 | 0.532314 |
MA0114.1 | 0.174997 |
MA0115.1 | 1.06753 |
MA0116.1 | 0.536665 |
MA0117.1 | 0.865782 |
MA0119.1 | 0.760742 |
MA0122.1 | 0.891407 |
MA0124.1 | 1.0263 |
MA0125.1 | 0.942948 |
MA0130.1 | 0 |
MA0131.1 | 0.585907 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.858623 |
MA0136.1 | 0.483775 |
MA0139.1 | 2.34656 |
MA0140.1 | 0.437738 |
MA0141.1 | 0.290336 |
MA0142.1 | 0.638837 |
MA0143.1 | 0.532484 |
MA0144.1 | 0.163394 |
MA0145.1 | 0.332712 |
MA0146.1 | 8.98507 |
MA0147.1 | 0.543675 |
MA0148.1 | 0.403564 |
MA0149.1 | 0.428597 |
MA0062.2 | 0.366815 |
MA0035.2 | 0.437071 |
MA0039.2 | 9.67447 |
MA0138.2 | 0.569505 |
MA0002.2 | 0.407187 |
MA0137.2 | 0.255808 |
MA0104.2 | 0.428616 |
MA0047.2 | 0.504873 |
MA0112.2 | 6.91351 |
MA0065.2 | 0.147044 |
MA0150.1 | 0.315136 |
MA0151.1 | 0 |
MA0152.1 | 0.443956 |
MA0153.1 | 0.926242 |
MA0154.1 | 3.28929 |
MA0155.1 | 0.866026 |
MA0156.1 | 0.257809 |
MA0157.1 | 0.612166 |
MA0158.1 | 0 |
MA0159.1 | 0.185458 |
MA0160.1 | 0.417847 |
MA0161.1 | 0 |
MA0162.1 | 7.09323 |
MA0163.1 | 9.65096 |
MA0164.1 | 0.544294 |
MA0080.2 | 0.238846 |
MA0018.2 | 0.517858 |
MA0099.2 | 0.444294 |
MA0079.2 | 15.1741 |
MA0102.2 | 1.36707 |
MA0258.1 | 0.919347 |
MA0259.1 | 0.560522 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
ATF3#467 | 3 | 6.73895235780263 | 0.00835893577141354 | 0.0329110643531124 |
BRF2#55290 | 1 | 107.457558139535 | 0.00926735017471692 | 0.0350145714817039 |
CCNT2#905 | 5 | 3.16810078848132 | 0.0122715766979429 | 0.0444840928380293 |
CHD2#1106 | 4 | 4.13760913364674 | 0.0113650969219832 | 0.0416637775083366 |
CTCF#10664 | 8 | 4.28820509846002 | 4.59406669642002e-05 | 0.000807335910663656 |
CTCFL#140690 | 3 | 5.92394230769231 | 0.0119085785576893 | 0.0433351928915162 |
E2F1#1869 | 6 | 2.94443352892759 | 0.00701511988615328 | 0.0296356324646049 |
E2F6#1876 | 7 | 3.51200901218817 | 0.000845395041948297 | 0.00637350846647211 |
EGR1#1958 | 9 | 4.48936118532912 | 4.28342047930016e-06 | 0.000135562470132615 |
ELF1#1997 | 9 | 3.83228816292678 | 1.71269377095518e-05 | 0.000392091242316501 |
ESR1#2099 | 4 | 12.3074413184618 | 0.000199967480398519 | 0.00240050617072884 |
ETS1#2113 | 6 | 5.8372565533214 | 0.000171358751874285 | 0.0020897403884865 |
GABPB1#2553 | 7 | 4.94737868532752 | 9.16652307636923e-05 | 0.00133557826949348 |
HEY1#23462 | 9 | 3.63609993879514 | 2.70877685450303e-05 | 0.000578176876982306 |
IRF1#3659 | 5 | 3.81858187678195 | 0.00546562857545373 | 0.0247592618864373 |
PAX5#5079 | 7 | 4.66869587182448 | 0.000134123573520654 | 0.0017595442651581 |
POLR2A#5430 | 10 | 2.14745317655807 | 0.000479337749163792 | 0.004366087143286 |
RAD21#5885 | 7 | 7.24852372681943 | 7.20863381607108e-06 | 0.000207686208859765 |
REST#5978 | 7 | 6.75502010128961 | 1.15734408021362e-05 | 0.000294593854236973 |
SIN3A#25942 | 6 | 3.24533083608908 | 0.00422384063048573 | 0.0201045342998495 |
SMC3#9126 | 5 | 7.52246642246642 | 0.000245958108351369 | 0.00267467918347654 |
STAT1#6772 | 4 | 8.28263499887968 | 0.000902242788343025 | 0.00662746761652533 |
TAF1#6872 | 8 | 2.67443702859623 | 0.00155661727806239 | 0.00988517280211344 |
TBP#6908 | 8 | 2.96541654967711 | 0.000730287566864471 | 0.00581729106824487 |
TCF12#6938 | 4 | 4.25378596087457 | 0.0103111806051884 | 0.0383016571071728 |
TFAP2A#7020 | 5 | 8.25931718652248 | 0.000158182952393598 | 0.00199426235695738 |
TFAP2C#7022 | 7 | 7.56646002690216 | 5.39952747293911e-06 | 0.00016488925431178 |
YY1#7528 | 10 | 4.91117074985386 | 1.22387217331053e-07 | 7.03080230519133e-06 |
ZBTB7A#51341 | 8 | 5.88152744630072 | 4.0719212874727e-06 | 0.000129496768374653 |
ZNF143#7702 | 8 | 10.8007012417823 | 3.55138054445481e-08 | 2.36998487336943e-06 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.