Personal tools

Coexpression cluster:C39: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,

Latest revision as of 10:15, 17 September 2013


Full id: C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133



Phase1 CAGE Peaks

Hg19::chr10:102488968..102488983,+p@chr10:102488968..102488983
+
Hg19::chr10:102502448..102502455,+p@chr10:102502448..102502455
+
Hg19::chr10:102502483..102502493,+p@chr10:102502483..102502493
+
Hg19::chr10:102502638..102502642,+p@chr10:102502638..102502642
+
Hg19::chr10:102505312..102505320,+p6@PAX2
Hg19::chr10:102505327..102505344,+p1@PAX2
Hg19::chr10:102505552..102505563,+p5@PAX2
Hg19::chr10:102505655..102505689,+p10@PAX2
Hg19::chr10:102505901..102505907,+p13@PAX2
Hg19::chr10:102543435..102543439,+p@chr10:102543435..102543439
+
Hg19::chr10:105308809..105308828,+p1@ENST00000457120
Hg19::chr10:114154468..114154485,+p17@ACSL5
Hg19::chr10:119307515..119307518,+p23@EMX2
Hg19::chr10:119590679..119590687,-p@chr10:119590679..119590687
-
Hg19::chr10:119590749..119590754,-p@chr10:119590749..119590754
-
Hg19::chr10:119799712..119799720,+p2@ENST00000417968
Hg19::chr10:119805558..119805572,-p7@RAB11FIP2
Hg19::chr10:119878381..119878386,-p@chr10:119878381..119878386
-
Hg19::chr10:119878409..119878417,-p@chr10:119878409..119878417
-
Hg19::chr10:120001011..120001039,+p1@ENST00000413810
Hg19::chr10:120001060..120001086,+p2@ENST00000413810
Hg19::chr10:120116498..120116505,+p3@ENST00000445161
Hg19::chr10:124432364..124432367,+p@chr10:124432364..124432367
+
Hg19::chr10:127467889..127467896,-p@chr10:127467889..127467896
-
Hg19::chr10:127467917..127467927,-p@chr10:127467917..127467927
-
Hg19::chr10:62423772..62423791,-p@chr10:62423772..62423791
-
Hg19::chr10:64565719..64565736,-p1@ENST00000425290
Hg19::chr10:64653965..64653975,-p@chr10:64653965..64653975
-
Hg19::chr10:64653994..64653999,-p@chr10:64653994..64653999
-
Hg19::chr10:77806932..77806938,+p@chr10:77806932..77806938
+
Hg19::chr10:77806947..77806952,+p@chr10:77806947..77806952
+
Hg19::chr10:79649255..79649263,-p19@DLG5
Hg19::chr10:8083905..8083915,+p@chr10:8083905..8083915
+
Hg19::chr10:99582220..99582236,+p@chr10:99582220..99582236
+
Hg19::chr10:99582238..99582247,+p@chr10:99582238..99582247
+
Hg19::chr10:99599763..99599792,+p@chr10:99599763..99599792
+
Hg19::chr11:111191106..111191110,+p@chr11:111191106..111191110
+
Hg19::chr11:125613178..125613226,-p@chr11:125613178..125613226
-
Hg19::chr11:125648641..125648646,-p2@PATE2
Hg19::chr11:125648685..125648688,-p3@PATE2
Hg19::chr11:125648690..125648734,-p1@PATE2
Hg19::chr11:125657931..125657940,+p3@PATE3
Hg19::chr11:125657963..125657969,+p2@PATE3
Hg19::chr11:125657972..125657979,+p4@PATE3
Hg19::chr11:125657984..125657989,+p5@PATE3
Hg19::chr11:125658009..125658027,+p1@PATE3
Hg19::chr11:128732046..128732054,+p@chr11:128732046..128732054
+
Hg19::chr11:26586938..26586948,-p9@MUC15
Hg19::chr11:26587190..26587201,-p6@MUC15
Hg19::chr11:26588634..26588641,-p@chr11:26588634..26588641
-
Hg19::chr11:26593779..26593795,-p3@MUC15
Hg19::chr11:26593801..26593817,-p1@MUC15
Hg19::chr11:26594590..26594599,+p@chr11:26594590..26594599
+
Hg19::chr11:26595638..26595669,-p@chr11:26595638..26595669
-
Hg19::chr11:26659947..26659973,+p@chr11:26659947..26659973
+
Hg19::chr11:26743353..26743355,-p5@SLC5A12
Hg19::chr11:3838082..3838123,+p9@PGAP2
Hg19::chr11:61280885..61280904,-p@chr11:61280885..61280904
-
Hg19::chr11:61280976..61280983,-p@chr11:61280976..61280983
-
Hg19::chr11:61281014..61281017,-p@chr11:61281014..61281017
-
Hg19::chr11:62009104..62009124,+p@chr11:62009104..62009124
+
Hg19::chr11:62066545..62066576,-p1@SCGB1D4
Hg19::chr11:64323569..64323574,+p7@SLC22A11
Hg19::chr11:69950033..69950046,+p11@ANO1
Hg19::chr11:69951071..69951079,+p@chr11:69951071..69951079
+
Hg19::chr11:69951723..69951737,+p@chr11:69951723..69951737
+
Hg19::chr11:71578488..71578491,+p@chr11:71578488..71578491
+
Hg19::chr11:7727980..7727990,-p3@OVCH2
Hg19::chr11:7727995..7728008,-p1@OVCH2
Hg19::chr11:7728016..7728029,-p2@OVCH2
Hg19::chr12:103218428..103218438,-p1@LINC00485
Hg19::chr12:117157639..117157642,-p4@C12orf49
Hg19::chr12:133186989..133187012,-p1@ENST00000544018
Hg19::chr12:133187039..133187052,-p2@LOC100507055
Hg19::chr12:133187101..133187102,-p5@LOC100507055
Hg19::chr12:133187131..133187169,-p1@LOC100507055
Hg19::chr12:4108768..4108811,-p@chr12:4108768..4108811
-
Hg19::chr12:48383331..48383341,-p@chr12:48383331..48383341
-
Hg19::chr12:53901266..53901269,-p1@NPFF
Hg19::chr12:6750422..6750429,-p15@LPAR5
Hg19::chr13:103347376..103347414,-p@chr13:103347376..103347414
-
Hg19::chr13:44587661..44587667,-p@chr13:44587661..44587667
-
Hg19::chr13:45048432..45048452,-p29@TSC22D1
Hg19::chr13:90858329..90858339,-p@chr13:90858329..90858339
-
Hg19::chr14:21029199..21029208,-p1@RNASE9
Hg19::chr14:21053248..21053261,-p@chr14:21053248..21053261
-
Hg19::chr14:21053277..21053291,-p@chr14:21053277..21053291
-
Hg19::chr14:21055821..21055829,-p3@RNASE11
Hg19::chr14:21055874..21055890,-p2@RNASE11
Hg19::chr14:21055898..21055902,-p4@RNASE11
Hg19::chr14:21058820..21058830,+p1@ENST00000554993
p1@uc001vxu.1
Hg19::chr14:21059506..21059525,-p@chr14:21059506..21059525
-
Hg19::chr14:21059530..21059539,-p@chr14:21059530..21059539
-
Hg19::chr14:21213984..21213993,+p2@EDDM3A
Hg19::chr14:21214039..21214057,+p1@EDDM3A
Hg19::chr14:21214091..21214097,+p3@EDDM3A
Hg19::chr14:21236500..21236512,+p3@EDDM3B
Hg19::chr14:21236554..21236576,+p1@EDDM3B
Hg19::chr14:21236589..21236600,+p2@EDDM3B
Hg19::chr14:21238304..21238345,+p@chr14:21238304..21238345
+
Hg19::chr14:21502129..21502134,-p5@RNASE13
Hg19::chr14:21502902..21502916,-p1@RNASE13
Hg19::chr14:21502944..21502954,-p2@RNASE13
Hg19::chr14:21502962..21502967,-p3@RNASE13
Hg19::chr14:67934077..67934096,-p9@TMEM229B
Hg19::chr14:68644730..68644737,+p@chr14:68644730..68644737
+
Hg19::chr14:74946919..74946939,-p2@MIR4709
Hg19::chr14:74951249..74951272,-p@chr14:74951249..74951272
-
Hg19::chr14:74953087..74953114,-p@chr14:74953087..74953114
-
Hg19::chr14:74959978..74959992,-p3@NPC2
Hg19::chr14:81552071..81552082,-p@chr14:81552071..81552082
-
Hg19::chr14:93279902..93279925,+p@chr14:93279902..93279925
+
Hg19::chr15:21916161..21916169,-p@chr15:21916161..21916169
-
Hg19::chr15:21916192..21916230,-p@chr15:21916192..21916230
-
Hg19::chr15:25165137..25165145,+p@chr15:25165137..25165145
+
Hg19::chr15:25165150..25165161,+p@chr15:25165150..25165161
+
Hg19::chr15:25165629..25165640,+p@chr15:25165629..25165640
+
Hg19::chr15:25165648..25165652,+p@chr15:25165648..25165652
+
Hg19::chr15:63383501..63383508,+p@chr15:63383501..63383508
+
Hg19::chr15:64423864..64423884,+p8@SNX1
Hg19::chr15:64423903..64423911,+p9@SNX1
Hg19::chr15:72468760..72468794,-p@chr15:72468760..72468794
-
Hg19::chr16:10977009..10977024,-p@chr16:10977009..10977024
-
Hg19::chr16:1338129..1338134,+p@chr16:1338129..1338134
+
Hg19::chr16:2126158..2126172,+p9@TSC2
Hg19::chr16:31141379..31141389,+p5@KAT8
Hg19::chr16:3193483..3193528,+p@chr16:3193483..3193528
+
Hg19::chr16:3193782..3193820,+p3@uc002cuf.1
Hg19::chr16:51160211..51160216,-p@chr16:51160211..51160216
-
Hg19::chr16:55909231..55909242,-p2@CES5A
Hg19::chr16:55909261..55909266,-p3@CES5A
Hg19::chr16:55909272..55909287,-p1@CES5A
Hg19::chr16:56385193..56385202,+p@chr16:56385193..56385202
+
Hg19::chr16:67022638..67022659,+p7@CES4A
Hg19::chr16:67517444..67517455,-p1@AGRP
Hg19::chr16:72173239..72173251,-p@chr16:72173239..72173251
-
Hg19::chr16:89651498..89651527,+p@chr16:89651498..89651527
+
Hg19::chr16:89651900..89651924,+p@chr16:89651900..89651924
+
Hg19::chr17:17480731..17480737,-p25@PEMT
Hg19::chr17:17480803..17480814,-p19@PEMT
Hg19::chr17:2278694..2278702,+p25@SGSM2
Hg19::chr17:2279599..2279617,+p7@SGSM2
Hg19::chr17:2279627..2279651,+p2@SGSM2
Hg19::chr17:38857436..38857450,-p@chr17:38857436..38857450
-
Hg19::chr17:42008668..42008688,+p@chr17:42008668..42008688
+
Hg19::chr17:42010021..42010041,-p@chr17:42010021..42010041
-
Hg19::chr17:42010054..42010064,-p@chr17:42010054..42010064
-
Hg19::chr17:42013628..42013633,+p@chr17:42013628..42013633
+
Hg19::chr17:42015069..42015072,+p@chr17:42015069..42015072
+
Hg19::chr17:42015622..42015642,+p@chr17:42015622..42015642
+
Hg19::chr17:42015654..42015659,+p@chr17:42015654..42015659
+
Hg19::chr17:42452108..42452120,-p@chr17:42452108..42452120
-
Hg19::chr17:46371622..46371665,+p1@ENST00000421610
Hg19::chr17:46679202..46679220,+p2@ENST00000491264
Hg19::chr17:46679250..46679298,+p1@ENST00000491264
Hg19::chr17:46686583..46686590,-p@chr17:46686583..46686590
-
Hg19::chr17:48456180..48456192,+p6@EME1
Hg19::chr17:48456309..48456321,+p3@EME1
Hg19::chr17:48767772..48767790,+p@chr17:48767772..48767790
+
Hg19::chr17:59239193..59239223,+p@chr17:59239193..59239223
+
Hg19::chr17:73539339..73539343,+p@chr17:73539339..73539343
+
Hg19::chr19:18874785..18874809,-p@chr19:18874785..18874809
-
Hg19::chr19:40320572..40320586,-p@chr19:40320572..40320586
-
Hg19::chr19:40786114..40786126,-p@chr19:40786114..40786126
-
Hg19::chr19:48479835..48479841,-p@chr19:48479835..48479841
-
Hg19::chr19:48494541..48494546,-p@chr19:48494541..48494546
-
Hg19::chr19:48497882..48497895,+p2@ELSPBP1
Hg19::chr19:48497901..48497911,+p6@ELSPBP1
Hg19::chr19:48497919..48497949,+p1@ELSPBP1
Hg19::chr19:48497953..48497960,+p7@ELSPBP1
Hg19::chr19:48497962..48497978,+p5@ELSPBP1
Hg19::chr19:48497983..48498002,+p3@ELSPBP1
Hg19::chr19:48498004..48498025,+p4@ELSPBP1
Hg19::chr19:56784103..56784122,+p@chr19:56784103..56784122
+
Hg19::chr19:56784131..56784155,+p@chr19:56784131..56784155
+
Hg19::chr19:56784173..56784194,+p@chr19:56784173..56784194
+
Hg19::chr19:56784204..56784211,+p@chr19:56784204..56784211
+
Hg19::chr19:6226164..6226186,-p3@AK027795
Hg19::chr1:120229056..120229061,+p@chr1:120229056..120229061
+
Hg19::chr1:120285422..120285431,+p10@PHGDH
Hg19::chr1:1268453..1268489,+p4@TAS1R3
Hg19::chr1:153750416..153750432,+p9@SLC27A3
Hg19::chr1:172416185..172416189,-p@chr1:172416185..172416189
-
Hg19::chr1:182367927..182367934,-p@chr1:182367927..182367934
-
Hg19::chr1:182368067..182368092,-p@chr1:182368067..182368092
-
Hg19::chr1:182369766..182369777,-p1@TEDDM1
Hg19::chr1:182369795..182369805,-p2@TEDDM1
Hg19::chr1:183230812..183230815,-p@chr1:183230812..183230815
-
Hg19::chr1:20649744..20649772,-p1@ENST00000444923
Hg19::chr1:209545365..209545377,+p1@ENST00000447257
Hg19::chr1:209616798..209616803,-p@chr1:209616798..209616803
-
Hg19::chr1:209616877..209616883,-p@chr1:209616877..209616883
-
Hg19::chr1:217891615..217891626,+p@chr1:217891615..217891626
+
Hg19::chr1:223895346..223895353,-p@chr1:223895346..223895353
-
Hg19::chr1:24982014..24982034,+p@chr1:24982014..24982034
+
Hg19::chr1:24982216..24982217,+p@chr1:24982216..24982217
+
Hg19::chr1:24982221..24982226,+p@chr1:24982221..24982226
+
Hg19::chr1:24982271..24982281,+p@chr1:24982271..24982281
+
Hg19::chr1:27277233..27277251,-p@chr1:27277233..27277251
-
Hg19::chr1:27277269..27277282,-p@chr1:27277269..27277282
-
Hg19::chr1:4169023..4169028,-p@chr1:4169023..4169028
-
Hg19::chr1:4169565..4169571,+p@chr1:4169565..4169571
+
Hg19::chr1:58904171..58904174,-p@chr1:58904171..58904174
-
Hg19::chr1:94520731..94520759,-p@chr1:94520731..94520759
-
Hg19::chr20:123140..123152,+p3@DEFB126
Hg19::chr20:123193..123198,+p2@DEFB126
Hg19::chr20:123216..123241,+p1@DEFB126
Hg19::chr20:13186643..13186668,-p@chr20:13186643..13186668
-
Hg19::chr20:138078..138085,+p4@DEFB127
Hg19::chr20:138089..138102,+p1@DEFB127
Hg19::chr20:138128..138140,+p2@DEFB127
Hg19::chr20:138146..138151,+p3@DEFB127
Hg19::chr20:170317..170326,-p2@DEFB128
Hg19::chr20:170344..170356,-p1@DEFB128
Hg19::chr20:185333..185342,+p@chr20:185333..185342
+
Hg19::chr20:185345..185351,+p@chr20:185345..185351
+
Hg19::chr20:207892..207905,+p1@DEFB129
Hg19::chr20:209951..209962,+p@chr20:209951..209962
+
Hg19::chr20:210034..210044,+p@chr20:210034..210044
+
Hg19::chr20:210094..210101,+p@chr20:210094..210101
+
Hg19::chr20:210156..210162,+p@chr20:210156..210162
+
Hg19::chr20:23433471..23433480,-p2@CST11
Hg19::chr20:23433502..23433514,-p1@CST11
Hg19::chr20:238357..238374,+p1@DEFB132
Hg19::chr20:29956369..29956413,+p1@DEFB118
Hg19::chr20:29994007..29994020,-p1@DEFB121
Hg19::chr20:44108584..44108596,+p4@WFDC2
Hg19::chr20:44108603..44108617,+p7@WFDC2
Hg19::chr20:44144249..44144274,-p1@SPINT3
Hg19::chr20:44144280..44144288,-p2@SPINT3
Hg19::chr20:44168117..44168135,-p1@WFDC6
Hg19::chr20:44179476..44179490,-p@chr20:44179476..44179490
-
Hg19::chr20:44190966..44191006,-p6@WFDC8
Hg19::chr20:44207890..44207899,-p2@WFDC8
Hg19::chr20:44207902..44207912,-p4@WFDC8
Hg19::chr20:44207915..44207929,-p1@WFDC8
Hg19::chr20:44207942..44207956,-p3@WFDC8
Hg19::chr20:44207968..44207975,-p5@WFDC8
Hg19::chr20:44243299..44243306,-p3@WFDC9
Hg19::chr20:44258358..44258370,+p2@WFDC10A
Hg19::chr20:44258371..44258390,+p1@WFDC10A
Hg19::chr20:44258401..44258402,+p4@WFDC10A
Hg19::chr20:44259876..44259892,-p2@WFDC9
Hg19::chr20:44259893..44259935,-p1@WFDC9
Hg19::chr20:44259941..44259944,-p4@WFDC9
Hg19::chr20:44299411..44299420,-p@chr20:44299411..44299420
-
Hg19::chr20:44330651..44330659,+p2@WFDC13
Hg19::chr20:44330670..44330703,+p1@WFDC13
Hg19::chr20:44330731..44330738,+p3@WFDC13
Hg19::chr20:44330800..44330802,-p@chr20:44330800..44330802
-
Hg19::chr20:44350968..44350994,+p1@SPINT4
Hg19::chr20:55865344..55865346,-p@chr20:55865344..55865346
-
Hg19::chr20:68295..68305,+p2@DEFB125
Hg19::chr20:68306..68318,+p1@DEFB125
Hg19::chr21:19049013..19049024,-p@chr21:19049013..19049024
-
Hg19::chr21:47337358..47337375,+p@chr21:47337358..47337375
+
Hg19::chr22:32000542..32000561,+p15@SFI1
Hg19::chr22:32000571..32000593,+p12@SFI1
Hg19::chr22:49346132..49346170,-p@chr22:49346132..49346170
-
Hg19::chr2:10341486..10341491,-p@chr2:10341486..10341491
-
Hg19::chr2:10341531..10341534,-p@chr2:10341531..10341534
-
Hg19::chr2:104991804..104991842,-p@chr2:104991804..104991842
-
Hg19::chr2:105484781..105484815,-p@chr2:105484781..105484815
-
Hg19::chr2:128389391..128389408,+p@chr2:128389391..128389408
+
Hg19::chr2:137045521..137045528,+p@chr2:137045521..137045528
+
Hg19::chr2:177027680..177027685,+p@chr2:177027680..177027685
+
Hg19::chr2:177029128..177029132,+p@chr2:177029128..177029132
+
Hg19::chr2:177681973..177681984,+p@chr2:177681973..177681984
+
Hg19::chr2:177684007..177684011,-p1@ENST00000451851
Hg19::chr2:177694212..177694235,-p@chr2:177694212..177694235
-
Hg19::chr2:183567799..183567806,+p@chr2:183567799..183567806
+
Hg19::chr2:189434296..189434299,+p32@GULP1
Hg19::chr2:189434311..189434329,+p15@GULP1
Hg19::chr2:242169383..242169410,-p65@HDLBP
Hg19::chr2:27486951..27486964,-p4@SLC30A3
Hg19::chr2:31805954..31805962,-p4@SRD5A2
Hg19::chr2:80773061..80773072,+p@chr2:80773061..80773072
+
Hg19::chr2:80773077..80773086,+p@chr2:80773077..80773086
+
Hg19::chr2:97578539..97578563,-p@chr2:97578539..97578563
-
Hg19::chr2:99553037..99553047,-p7@C2orf55
Hg19::chr2:99553078..99553091,-p6@C2orf55
Hg19::chr3:106558657..106558676,-p@chr3:106558657..106558676
-
Hg19::chr3:107140058..107140066,-p@chr3:107140058..107140066
-
Hg19::chr3:140961094..140961103,+p@chr3:140961094..140961103
+
Hg19::chr3:140961228..140961237,+p@chr3:140961228..140961237
+
Hg19::chr3:31465107..31465133,-p@chr3:31465107..31465133
-
Hg19::chr3:48264887..48264922,+p3@CAMP
Hg19::chr3:48264928..48264968,+p2@CAMP
Hg19::chr3:48264969..48264974,+p5@CAMP
Hg19::chr3:48264976..48265003,+p1@CAMP
Hg19::chr3:49149230..49149264,-p@chr3:49149230..49149264
-
Hg19::chr3:49699110..49699158,+p@chr3:49699110..49699158
+
Hg19::chr3:49699854..49699887,+p@chr3:49699854..49699887
+
Hg19::chr4:11338379..11338403,+p@chr4:11338379..11338403
+
Hg19::chr4:143880345..143880349,-p@chr4:143880345..143880349
-
Hg19::chr4:153167893..153167900,-p@chr4:153167893..153167900
-
Hg19::chr4:153167929..153167932,-p@chr4:153167929..153167932
-
Hg19::chr4:153486478..153486500,-p@chr4:153486478..153486500
-
Hg19::chr4:170833850..170833861,+p@chr4:170833850..170833861
+
Hg19::chr4:170833863..170833889,+p@chr4:170833863..170833889
+
Hg19::chr4:170833919..170833930,+p@chr4:170833919..170833930
+
Hg19::chr4:170833963..170833968,+p@chr4:170833963..170833968
+
Hg19::chr4:170833984..170833994,+p@chr4:170833984..170833994
+
Hg19::chr4:170834002..170834005,+p@chr4:170834002..170834005
+
Hg19::chr4:35091923..35091931,-p@chr4:35091923..35091931
-
Hg19::chr4:44873786..44873795,+p@chr4:44873786..44873795
+
Hg19::chr4:56138971..56138991,-p@chr4:56138971..56138991
-
Hg19::chr4:57524061..57524074,-p17@HOPX
Hg19::chr4:57687834..57687843,-p2@SPINK2
Hg19::chr4:57687847..57687911,-p1@SPINK2
Hg19::chr4:74980325..74980346,+p@chr4:74980325..74980346
+
Hg19::chr4:88161522..88161527,-p3@ENST00000506274
Hg19::chr4:88161653..88161660,-p2@ENST00000506274
Hg19::chr4:88161668..88161689,-p1@ENST00000506274
Hg19::chr4:9446133..9446145,+p1@DEFB131
Hg19::chr5:149247553..149247591,-p3@PDE6A
Hg19::chr5:160729887..160729898,+p@chr5:160729887..160729898
+
Hg19::chr5:17302742..17302760,-p@chr5:17302742..17302760
-
Hg19::chr5:175288674..175288690,+p17@CPLX2
Hg19::chr5:175288705..175288713,+p28@CPLX2
Hg19::chr5:56052893..56052913,-p@chr5:56052893..56052913
-
Hg19::chr5:59668484..59668495,-p75@PDE4D
Hg19::chr5:59668546..59668555,-p87@PDE4D
Hg19::chr5:59668691..59668699,-p114@PDE4D
Hg19::chr5:74191783..74191795,-p20@FAM169A
Hg19::chr6:106332801..106332809,+p@chr6:106332801..106332809
+
Hg19::chr6:117747221..117747255,-p4@ROS1
Hg19::chr6:28493654..28493661,+p2@GPX5
Hg19::chr6:28493666..28493669,+p4@GPX5
Hg19::chr6:28493753..28493768,+p1@GPX5
Hg19::chr6:35732269..35732294,-p@chr6:35732269..35732294
-
Hg19::chr6:35744367..35744380,+p1@C6orf126
Hg19::chr6:35744420..35744448,-p@chr6:35744420..35744448
-
Hg19::chr6:35748783..35748831,+p1@C6orf127
Hg19::chr6:36884204..36884228,+p@chr6:36884204..36884228
+
Hg19::chr6:36884262..36884281,+p@chr6:36884262..36884281
+
Hg19::chr6:46138579..46138590,-p5@ENPP5
Hg19::chr6:46138593..46138604,-p4@ENPP5
Hg19::chr6:46138638..46138659,-p2@ENPP5
Hg19::chr6:46159025..46159070,+p@chr6:46159025..46159070
+
Hg19::chr6:49806981..49806986,-p@chr6:49806981..49806986
-
Hg19::chr6:49815946..49815952,-p@chr6:49815946..49815952
-
Hg19::chr6:49834166..49834204,-p1@CRISP1
Hg19::chr6:49834209..49834220,-p3@CRISP1
Hg19::chr6:49834240..49834253,-p2@CRISP1
Hg19::chr6:49834262..49834269,-p4@CRISP1
Hg19::chr6:49913653..49913664,+p@chr6:49913653..49913664
+
Hg19::chr6:49931873..49931879,-p1@DEFB114
Hg19::chr6:49989700..49989711,-p1@DEFB110
Hg19::chr6:50017636..50017649,-p@chr6:50017636..50017649
-
Hg19::chr6:50927244..50927252,+p@chr6:50927244..50927252
+
Hg19::chr6:51280374..51280406,-p@chr6:51280374..51280406
-
Hg19::chr6:6711365..6711379,-p@chr6:6711365..6711379
-
Hg19::chr6:71994617..71994637,-p@chr6:71994617..71994637
-
Hg19::chr6:8436206..8436217,-p7@SLC35B3
Hg19::chr7:141695645..141695647,+p6@MGAM
Hg19::chr7:141695649..141695660,+p3@MGAM
Hg19::chr7:155871488..155871492,+p@chr7:155871488..155871492
+
Hg19::chr7:20655274..20655279,+p8@ABCB5
Hg19::chr7:20655284..20655295,+p5@ABCB5
Hg19::chr7:25702692..25702705,-p2@ENST00000446840
p2@uc003sxp.1
Hg19::chr7:43843249..43843256,+p@chr7:43843249..43843256
+
Hg19::chr7:43843307..43843322,+p@chr7:43843307..43843322
+
Hg19::chr8:11839760..11839774,+p1@DEFB135
Hg19::chr8:11853819..11853827,-p1@DEFB134
Hg19::chr8:132302164..132302165,+p@chr8:132302164..132302165
+
Hg19::chr8:139734446..139734464,-p7@COL22A1
Hg19::chr8:139734485..139734506,-p6@COL22A1
Hg19::chr8:142335065..142335096,+p@chr8:142335065..142335096
+
Hg19::chr8:142335166..142335176,+p@chr8:142335166..142335176
+
Hg19::chr8:144161715..144161725,+p@chr8:144161715..144161725
+
Hg19::chr8:144162006..144162051,+p@chr8:144162006..144162051
+
Hg19::chr8:24105912..24105924,-p@chr8:24105912..24105924
-
Hg19::chr8:24298438..24298450,+p3@ADAM7
Hg19::chr8:24298494..24298504,+p2@ADAM7
Hg19::chr8:24298531..24298551,+p1@ADAM7
Hg19::chr8:24298569..24298574,+p6@ADAM7
Hg19::chr8:24298606..24298612,+p4@ADAM7
Hg19::chr8:24314164..24314166,+p@chr8:24314164..24314166
+
Hg19::chr8:24342831..24342840,+p@chr8:24342831..24342840
+
Hg19::chr8:24365195..24365198,+p@chr8:24365195..24365198
+
Hg19::chr8:26292001..26292021,-p1@ENST00000515686
Hg19::chr8:27469162..27469173,-p40@CLU
Hg19::chr8:27469196..27469294,-p2@CLU
Hg19::chr8:71368308..71368314,-p@chr8:71368308..71368314
-
Hg19::chr8:71368674..71368687,-p@chr8:71368674..71368687
-
Hg19::chr8:71368695..71368709,-p@chr8:71368695..71368709
-
Hg19::chr9:116997736..116997752,+p@chr9:116997736..116997752
+
Hg19::chr9:132204351..132204358,-p@chr9:132204351..132204358
-
Hg19::chr9:133911487..133911496,+p@chr9:133911487..133911496
+
Hg19::chr9:135742433..135742482,+p@chr9:135742433..135742482
+
Hg19::chr9:136570132..136570169,-p@chr9:136570132..136570169
-
Hg19::chr9:136574345..136574367,-p@chr9:136574345..136574367
-
Hg19::chr9:136578622..136578634,-p5@SARDH
Hg19::chr9:136581203..136581243,-p@chr9:136581203..136581243
-
Hg19::chr9:139141139..139141172,+p@chr9:139141139..139141172
+
Hg19::chr9:139505178..139505188,+p@chr9:139505178..139505188
+
Hg19::chr9:139637387..139637397,-p4@LCN10
Hg19::chr9:139640458..139640471,-p3@LCN6
Hg19::chr9:139640480..139640494,-p2@LCN6
Hg19::chr9:139640581..139640628,+p1@LOC100128593
Hg19::chr9:139642968..139642983,-p1@LCN6
p2@LCN10
Hg19::chr9:139652508..139652517,-p3@LCN8
Hg19::chr9:139652520..139652524,-p12@LCN8
Hg19::chr9:139652534..139652543,-p4@LCN8
Hg19::chr9:139652550..139652557,-p7@LCN8
Hg19::chr9:139652568..139652569,-p17@LCN8
Hg19::chr9:139652678..139652699,-p1@LCN8
Hg19::chr9:139652713..139652718,-p8@LCN8
Hg19::chr9:139652723..139652730,-p9@LCN8
Hg19::chr9:139652754..139652761,-p10@LCN8
Hg19::chr9:139846708..139846773,+p1@LCN12
Hg19::chr9:139846820..139846864,+p8@LCN12
Hg19::chr9:139847347..139847358,+p9@LCN12
Hg19::chr9:139849056..139849092,+p@chr9:139849056..139849092
+
Hg19::chr9:139863824..139863841,+p@chr9:139863824..139863841
+
Hg19::chr9:139863845..139863847,+p@chr9:139863845..139863847
+
Hg19::chr9:139863849..139863870,+p@chr9:139863849..139863870
+
Hg19::chr9:139863878..139863893,+p@chr9:139863878..139863893
+
Hg19::chr9:139864447..139864478,+p@chr9:139864447..139864478
+
Hg19::chr9:93975437..93975444,-p@chr9:93975437..93975444
-
Hg19::chrX:10008636..10008643,-p@chrX:10008636..10008643
-
Hg19::chrX:100985204..100985241,+p@chrX:100985204..100985241
+
Hg19::chrX:110754839..110754855,+p3@DKFZp686D0853
Hg19::chrX:112044378..112044412,-p@chrX:112044378..112044412
-
Hg19::chrX:112044664..112044668,-p@chrX:112044664..112044668
-
Hg19::chrX:112084951..112084962,+p@chrX:112084951..112084962
+
Hg19::chrX:112123787..112123792,+p@chrX:112123787..112123792
+
Hg19::chrX:11289165..11289191,-p@chrX:11289165..11289191
-
Hg19::chrX:125300231..125300245,-p2@DCAF12L2
Hg19::chrX:125300258..125300284,-p1@DCAF12L2
Hg19::chrX:145185098..145185104,-p@chrX:145185098..145185104
-
Hg19::chrX:152082921..152082928,+p9@ZNF185
Hg19::chrX:152082969..152082986,+p7@ZNF185
Hg19::chrX:152679456..152679462,-p@chrX:152679456..152679462
-
Hg19::chrX:15525403..15525409,+p8@BMX
Hg19::chrX:15525426..15525438,+p3@BMX
Hg19::chrX:15525470..15525483,+p5@BMX
Hg19::chrX:15887107..15887122,-p@chrX:15887107..15887122
-
Hg19::chrX:15887310..15887344,-p@chrX:15887310..15887344
-
Hg19::chrX:16913211..16913222,+p@chrX:16913211..16913222
+
Hg19::chrX:19031911..19031914,-p@chrX:19031911..19031914
-
Hg19::chrX:19031918..19031923,-p@chrX:19031918..19031923
-
Hg19::chrX:19081123..19081127,-p@chrX:19081123..19081127
-
Hg19::chrX:19140503..19140514,-p@chrX:19140503..19140514
-
Hg19::chrX:19140575..19140622,-p1@GPR64
Hg19::chrX:19141461..19141470,-p@chrX:19141461..19141470
-
Hg19::chrX:20081951..20081964,-p12@MAP7D2
Hg19::chrX:20335895..20335906,-p@chrX:20335895..20335906
-
Hg19::chrX:23072856..23072859,-p@chrX:23072856..23072859
-
Hg19::chrX:23180877..23180881,-p@chrX:23180877..23180881
-
Hg19::chrX:23368174..23368178,-p@chrX:23368174..23368178
-
Hg19::chrX:23514498..23514501,-p@chrX:23514498..23514501
-
Hg19::chrX:23684731..23684738,-p@chrX:23684731..23684738
-
Hg19::chrX:23694251..23694254,-p@chrX:23694251..23694254
-
Hg19::chrX:23710342..23710348,-p@chrX:23710342..23710348
-
Hg19::chrX:23710536..23710543,+p@chrX:23710536..23710543
+
Hg19::chrX:40159589..40159601,-p@chrX:40159589..40159601
-
Hg19::chrX:48957969..48957984,-p11@WDR45
Hg19::chrX:55515345..55515379,+p@chrX:55515345..55515379
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042742defense response to bacterium2.57358103660875e-17
GO:0009617response to bacterium5.75568533087663e-17
GO:0051707response to other organism2.65519661258531e-13
GO:0009607response to biotic stimulus1.5706494034578e-11
GO:0051704multi-organism process7.6126961140875e-11
GO:0006952defense response5.21198666657427e-09
GO:0030414protease inhibitor activity8.34111943821792e-07
GO:0004866endopeptidase inhibitor activity7.59444133361891e-06
GO:0004867serine-type endopeptidase inhibitor activity7.59444133361891e-06
GO:0004857enzyme inhibitor activity1.92678201597427e-05
GO:0004522pancreatic ribonuclease activity0.00103973182225395
GO:0016892endoribonuclease activity, producing 3'-phosphomonoesters0.00174869510084071
GO:0016894endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters0.00199396234918022
GO:0006629lipid metabolic process0.00231003462070621
GO:0019953sexual reproduction0.00328427593768674
GO:0007338single fertilization0.0106024648605205
GO:0009566fertilization0.0110716057967754
GO:0004519endonuclease activity0.0130618980962842
GO:0004521endoribonuclease activity0.0187160920694898
GO:0007283spermatogenesis0.0375243664717349
GO:0048232male gamete generation0.0375243664717349
GO:0004540ribonuclease activity0.0375243664717349
GO:0045087innate immune response0.0375243664717349
GO:0051149positive regulation of muscle cell differentiation0.0375243664717349
GO:0004617phosphoglycerate dehydrogenase activity0.0375243664717349
GO:0005982starch metabolic process0.0375243664717349
GO:0043416regulation of skeletal muscle regeneration0.0375243664717349
GO:0019747regulation of isoprenoid metabolic process0.0375243664717349
GO:0015633zinc transporting ATPase activity0.0375243664717349
GO:0004608phosphatidylethanolamine N-methyltransferase activity0.0375243664717349
GO:0005983starch catabolic process0.0375243664717349
GO:0051155positive regulation of striated muscle cell differentiation0.0375243664717349
GO:0043415positive regulation of skeletal muscle regeneration0.0375243664717349
GO:0009917sterol 5-alpha reductase activity0.0375243664717349
GO:0051153regulation of striated muscle cell differentiation0.0375243664717349
GO:0004518nuclease activity0.0386689632252155
GO:0005184neuropeptide hormone activity0.0401226071427917
GO:0007276gamete generation0.0472744431405105
GO:0006810transport0.0479396339481545



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.56221e-14
MA0004.10.0182733
MA0006.12.96123e-07
MA0007.19.52701
MA0009.10.0285521
MA0014.18.87181e-15
MA0017.10.319503
MA0019.10.0760206
MA0024.10.0016834
MA0025.10.04539
MA0027.10.808003
MA0028.10.00154117
MA0029.12.21031
MA0030.10.465037
MA0031.10.175964
MA0038.10.734682
MA0040.10.0244866
MA0041.10.138893
MA0042.10.0069652
MA0043.10.000270166
MA0046.15.8091
MA0048.10.00229099
MA0050.10.0125138
MA0051.10.00182403
MA0052.10.54625
MA0055.10.0329027
MA0056.10
MA0057.10.00160292
MA0058.10.0210508
MA0059.10.0129936
MA0060.15.45229e-05
MA0061.11.76623e-05
MA0063.10
MA0066.15.28567
MA0067.10.0142917
MA0068.10.102998
MA0069.11.59852
MA0070.10.408466
MA0071.10.829773
MA0072.10.0938497
MA0073.10
MA0074.12.18378
MA0076.11.24388e-05
MA0077.11.71251
MA0078.10.0682764
MA0081.10.686222
MA0083.10.930178
MA0084.10.422216
MA0087.10.387726
MA0088.10.00370182
MA0089.10
MA0090.10.814152
MA0091.10.138277
MA0092.11.49684
MA0093.10.014938
MA0095.10
MA0098.10
MA0100.10.00684455
MA0101.14.83198e-08
MA0103.11.64629
MA0105.13.66657e-12
MA0106.10.497738
MA0107.13.29298e-05
MA0108.21.20892
MA0109.10
MA0111.10.0551304
MA0113.13.56551
MA0114.10.031877
MA0115.10.037826
MA0116.10.013035
MA0117.10.0159819
MA0119.10.31003
MA0122.10.121631
MA0124.10.515484
MA0125.10.488172
MA0130.10
MA0131.10.00272331
MA0132.10
MA0133.10
MA0135.11.32671
MA0136.10.132797
MA0139.14.40488e-05
MA0140.11.45169
MA0141.10.572146
MA0142.11.67041
MA0143.10.470329
MA0144.11.92217
MA0145.10.338178
MA0146.12.31124e-11
MA0147.11.16783e-06
MA0148.10.522794
MA0149.10.0964483
MA0062.21.19606e-06
MA0035.22.76684
MA0039.20
MA0138.20.425941
MA0002.20.606886
MA0137.20.925744
MA0104.25.57381e-08
MA0047.20.254871
MA0112.21.80592
MA0065.20.394931
MA0150.10.462566
MA0151.10
MA0152.11.17562
MA0153.11.14873
MA0154.10.730531
MA0155.10.00857764
MA0156.10.0890634
MA0157.10.645789
MA0158.10
MA0159.10.144399
MA0160.11.54354
MA0161.10
MA0162.11.11044e-10
MA0163.12.21954e-07
MA0164.10.816754
MA0080.20.503655
MA0018.20.00676733
MA0099.20.0137321
MA0079.20
MA0102.20.0618605
MA0258.17.68691
MA0259.12.92765e-05
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
ESR1#2099281.872871504983320.001333670998687080.00885206643990338



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C39&oldid=3067157"