FFCP PHASE1:Mm9::chr7:52589124..52589170,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68667|HGNC=|MCL_coexpression_id=24|UniProt=Q7TN37|association_with_transcript=0bp_to_ENSMUST00000042194,NM_175130,uc009gup.2,uc012fkf.1_5end|description=CAGE_peak_1_at_Trpm4_5end|id=chr7:52589124..52589170,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.16e-18!43;UBERON:0005409!1.13e-16!59;UBERON:0000344!2.35e-10!15;UBERON:0001242!3.03e-09!13;UBERON:0000060!3.03e-09!13;UBERON:0001262!3.03e-09!13;UBERON:0004786!3.03e-09!13;UBERON:0000485!6.54e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.71e-16,31;UBERON:0005409,4.35e-14,47;UBERON:0000344,2.13e-10,15;UBERON:0001242,2.78e-09,13;UBERON:0001262,2.78e-09,13;UBERON:0004786,2.78e-09,13;UBERON:0000485,6.16e-07,11|phase1_expression=5.44506080156299,78.8684421264956,68.7048851478199,120.380756100118,162.791112232563,18.6345991822198,13.5495331545405,1.80772652818207,0.84473233291,0,0.34243593645101,0.0797721589953364,1.88320802924326,1.39872643870396,0.666219523631325,0.404950534779652,0.699561878128147,1.10411757875383,1.37114433605739,0.84877930359606,5.18764069921526,0.695036658406197,0.261199789138935,20.4790301175561,18.5821517664408,45.9385571292016,34.460959692726,23.270893130076,67.8383607459255,66.0318939971019,22.8382425974964,0.635030673459631,0,0,12.4206196493048,7.81302833184914,8.77928231928187,0,0,0,0,0,0,1.38486499773135,2.83855407414641,2.0190142737785,4.69434806608824,0.436050312760893,0.878744730937887,0.777719596297134,1.39986421625363,0,0.503347818173209,2.17608642603403,1.00828139742739,2.31533492432352,4.29800159908135,4.64104883049698,0.202316460859598,3.70293685490423,0,6.43804610931351,4.4464739805557,4.94944844504769,3.9554654502679,3.5524005747305,2.69640099466564,1.92109152660777,1.8664130215526,0.810035629990144,1.05162480675691,1.71390590642282,3.09215957332259,0.489963196859816,0.575072826109418,0,2.20231761998777,1.40456071893706,1.0752457327937,1.71452174049252,2.37867873366265,4.16730696445408,3.07101298901519,3.37657566019008,1.22238598221448,2.06240009831567,3.27454865837937,1.3047961207771,1.59025005999687,1.5870027622425,2.89864488701678,4.30211938490693,0,0,0,0,3.08977724289854,2.21559419351475,2.85764605063156,4.59341446863442,6.33795388995062,1.28326477414318,7.64415719119937,7.11066703153331,3.89683873820185,5.06719730950197,6.57181778519218,7.07940054258172,0.776813650941515,1.48442139064825,3.29622120855658,1.52232739156071,3.22861696158482,1.20578112442098,3.76283862834255,2.38766523526383,4.20231445148436,3.18118585223806,1.76922110389975,6.14714029800155,5.74187947997023,2.90925151881133,24.2309289583559,0.878342391034642,3.14170060220183,28.8666472385708,0.479260498023681,0,1.01656181658452,0.898743836428936,0,1.7591609295801,2.25971616249959,5.11430914660661,1.66230435647648,1.46017136760982,6.72139801412087,4.85187185379363,6.57079171927554,3.78795340595653,2.73252930221678,2.5289231487682,1.62055916824814,2.86339153887859,4.96666443804693,3.84341160854549,3.37326208415024,1.03481348295606,1.72454394346274,2.83659120251729,4.04687585577082,5.47989331068937,3.89266148915837,4.179025998266,5.76189981942242,3.58261680273288,0,0.257347907114715,0.568326998791185,2.27838349789052,2.34526059981096,3.06105504483725,4.02466050494857,3.93528463494808,4.47374627373397,5.11574678450897,4.82892122519315,4.32031766758527,6.91151369636618,4.59668899421467,6.72871119230603,6.14039947186396,5.04965265169416,6.97873377553933,1.26173969138476,1.13195073617213,52.2061677114401,18.5115396664481,2.34617075588757,3.48355007790658,4.51036114627327,6.85723983719365,11.1189021922435,8.17970192284004,47.9274352159957,16.9639923365731,22.368833583224,21.8852119245266,22.0309418444606,27.8634016682809,31.9884313814547,36.8411355520579,2.27601481143698,3.88444942873078,5.63538678365402,3.86937522906097,3.68509725618489,5.26018649177389,3.85742876457969,3.54264355151045,2.04098346193787,3.08492909804501,0.592905254174298,1.00107063429656,0.196558995113203,0.674586337154561,0.608580364165509,0.482354319504834,1.78238096246994,2.30156909960649,5.83686816390127,5.76578967694971,0,4.83783231969054,4.36852742360385,3.28352541331245,1.07638448113147,1.92977408545347,4.24932337383191,2.65287976478679,3.7481944581666,4.58311731593008,3.98973422090454,4.85768146581266,4.99891645860629,14.0496226457615,5.04432461139811,5.97954662051692,8.6105575075043,6.882259218061,3.9717545829156,8.38964539772767,9.04747703635634,2.17562273527484,2.95058563811422,3.03530420935206,2.0871576698413,3.98519734413491,1.14754461763673,5.30188947129183,1.89304931649754,0.780877488593277,1.50796378412959,1.19484398976276,1.33679204449436,1.13230612315533,0.404810701674894,1.16902343164525,0.790575555893047,0.963963949265421,4.82596289708113,7.47875535402472,5.04949573996086,6.76377504187395,6.63725691699814,3.8844901784797,3.62788268357701,4.52652191414155,4.72483028609236,3.99665692327106,12.1461297789064,11.633079343280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| ||
|EntrezGene=68667 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q7TN37 | |||
|association_with_transcript=0bp_to_ENSMUST00000042194,NM_175130,uc009gup.2,uc012fkf.1_5end | |||
|description=CAGE_peak_1_at_Trpm4_5end | |||
|id=chr7:52589124..52589170,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.16e-18!43;UBERON:0005409!1.13e-16!59;UBERON:0000344!2.35e-10!15;UBERON:0001242!3.03e-09!13;UBERON:0000060!3.03e-09!13;UBERON:0001262!3.03e-09!13;UBERON:0004786!3.03e-09!13;UBERON:0000485!6.54e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.71e-16,31;UBERON:0005409,4.35e-14,47;UBERON:0000344,2.13e-10,15;UBERON:0001242,2.78e-09,13;UBERON:0001262,2.78e-09,13;UBERON:0004786,2.78e-09,13;UBERON:0000485,6.16e-07,11 | |||
|phase1_expression=5.44506080156299,78.8684421264956,68.7048851478199,120.380756100118,162.791112232563,18.6345991822198,13.5495331545405,1.80772652818207,0.84473233291,0,0.34243593645101,0.0797721589953364,1.88320802924326,1.39872643870396,0.666219523631325,0.404950534779652,0.699561878128147,1.10411757875383,1.37114433605739,0.84877930359606,5.18764069921526,0.695036658406197,0.261199789138935,20.4790301175561,18.5821517664408,45.9385571292016,34.460959692726,23.270893130076,67.8383607459255,66.0318939971019,22.8382425974964,0.635030673459631,0,0,12.4206196493048,7.81302833184914,8.77928231928187,0,0,0,0,0,0,1.38486499773135,2.83855407414641,2.0190142737785,4.69434806608824,0.436050312760893,0.878744730937887,0.777719596297134,1.39986421625363,0,0.503347818173209,2.17608642603403,1.00828139742739,2.31533492432352,4.29800159908135,4.64104883049698,0.202316460859598,3.70293685490423,0,6.43804610931351,4.4464739805557,4.94944844504769,3.9554654502679,3.5524005747305,2.69640099466564,1.92109152660777,1.8664130215526,0.810035629990144,1.05162480675691,1.71390590642282,3.09215957332259,0.489963196859816,0.575072826109418,0,2.20231761998777,1.40456071893706,1.0752457327937,1.71452174049252,2.37867873366265,4.16730696445408,3.07101298901519,3.37657566019008,1.22238598221448,2.06240009831567,3.27454865837937,1.3047961207771,1.59025005999687,1.5870027622425,2.89864488701678,4.30211938490693,0,0,0,0,3.08977724289854,2.21559419351475,2.85764605063156,4.59341446863442,6.33795388995062,1.28326477414318,7.64415719119937,7.11066703153331,3.89683873820185,5.06719730950197,6.57181778519218,7.07940054258172,0.776813650941515,1.48442139064825,3.29622120855658,1.52232739156071,3.22861696158482,1.20578112442098,3.76283862834255,2.38766523526383,4.20231445148436,3.18118585223806,1.76922110389975,6.14714029800155,5.74187947997023,2.90925151881133,24.2309289583559,0.878342391034642,3.14170060220183,28.8666472385708,0.479260498023681,0,1.01656181658452,0.898743836428936,0,1.7591609295801,2.25971616249959,5.11430914660661,1.66230435647648,1.46017136760982,6.72139801412087,4.85187185379363,6.57079171927554,3.78795340595653,2.73252930221678,2.5289231487682,1.62055916824814,2.86339153887859,4.96666443804693,3.84341160854549,3.37326208415024,1.03481348295606,1.72454394346274,2.83659120251729,4.04687585577082,5.47989331068937,3.89266148915837,4.179025998266,5.76189981942242,3.58261680273288,0,0.257347907114715,0.568326998791185,2.27838349789052,2.34526059981096,3.06105504483725,4.02466050494857,3.93528463494808,4.47374627373397,5.11574678450897,4.82892122519315,4.32031766758527,6.91151369636618,4.59668899421467,6.72871119230603,6.14039947186396,5.04965265169416,6.97873377553933,1.26173969138476,1.13195073617213,52.2061677114401,18.5115396664481,2.34617075588757,3.48355007790658,4.51036114627327,6.85723983719365,11.1189021922435,8.17970192284004,47.9274352159957,16.9639923365731,22.368833583224,21.8852119245266,22.0309418444606,27.8634016682809,31.9884313814547,36.8411355520579,2.27601481143698,3.88444942873078,5.63538678365402,3.86937522906097,3.68509725618489,5.26018649177389,3.85742876457969,3.54264355151045,2.04098346193787,3.08492909804501,0.592905254174298,1.00107063429656,0.196558995113203,0.674586337154561,0.608580364165509,0.482354319504834,1.78238096246994,2.30156909960649,5.83686816390127,5.76578967694971,0,4.83783231969054,4.36852742360385,3.28352541331245,1.07638448113147,1.92977408545347,4.24932337383191,2.65287976478679,3.7481944581666,4.58311731593008,3.98973422090454,4.85768146581266,4.99891645860629,14.0496226457615,5.04432461139811,5.97954662051692,8.6105575075043,6.882259218061,3.9717545829156,8.38964539772767,9.04747703635634,2.17562273527484,2.95058563811422,3.03530420935206,2.0871576698413,3.98519734413491,1.14754461763673,5.30188947129183,1.89304931649754,0.780877488593277,1.50796378412959,1.19484398976276,1.33679204449436,1.13230612315533,0.404810701674894,1.16902343164525,0.790575555893047,0.963963949265421,4.82596289708113,7.47875535402472,5.04949573996086,6.76377504187395,6.63725691699814,3.8844901784797,3.62788268357701,4.52652191414155,4.72483028609236,3.99665692327106,12.1461297789064,11.6330793432802,5.70395805415554,6.95280867458795,9.48767477174989,8.25084345985495,3.40439605753788,3.42116078659489,8.79639049722731,8.78781843629528,6.56158864476412,9.0968096977056,7.56925494769756,8.52501857520878,3.05073220482823,1.90648863777438,5.73373834942901,6.10079135883476,5.65125493435669,5.91066664295927,4.77489376012546,3.11867709515616,41.6817596380687,2.22510362412612,0.683483523191411,4.74689796315412,1.48155621895769,0.565105371014073,0.136694227721025,1.14389086603261,1.5298058699447,1.39951452323658,1.24379976423981,6.68269432610579,3.16335993581135,5.89626454667861,5.07625101862466,5.22720740036172,6.98760203987768,6.60835297285622,9.91841468704031,7.32916637555283,43.0321711328752,4.97071450469541,0,5.08356256549528,4.79829622325583,7.19469396872976,5.29555276258697,5.57555214119568,7.62822051197401,6.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| |||
|short_description=p1@Trpm4 | |||
}} | |||
Revision as of 13:45, 14 September 2013
| Short description: | p1@Trpm4 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Trpm4_5end |
| Coexpression cluster: | MCL_coexpression_mm9:24 |
| Association with transcript: | 0bp_to_ENSMUST00000042194, NM_175130, uc009gup.2, uc012fkf.1_5end |
| EntrezGene: | Trpm4 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestine | 1.71e-16 | 31 |
| gastrointestinal system | 4.35e-14 | 47 |
| mucosa | 2.13e-10 | 15 |
| intestinal mucosa | 2.78e-09 | 13 |
| wall of intestine | 2.78e-09 | 13 |
| gastrointestinal system mucosa | 2.78e-09 | 13 |
| simple columnar epithelium | 6.16e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
