FFCP PHASE1:Hg19::chrX:136650899..136650918,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7547|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12874|TSSclassifier=S|UniProt=|association_with_transcript=-45bp_to_ENST00000478471_5end|coexpression_cluster_id=C232|description=CAGE_peak_7_at_ZIC3_5end|id=chrX:136650899..136650918,+|ontology_enrichment_celltype=CL:0002322!3.32e-29!5;CL:0000039!1.69e-20!7;CL:0000586!1.69e-20!7;CL:0000133!4.30e-20!59;CL:0000047!1.56e-17!8;CL:0000064!2.02e-17!3;CL:0005012!2.02e-17!3;CL:0000067!2.02e-17!3;CL:0002304!2.02e-17!3;CL:0000221!3.15e-16!71;CL:0000540!1.79e-15!6;CL:0000031!1.79e-15!6;CL:0000404!1.79e-15!6;CL:0000710!8.40e-10!20;CL:0000075!1.60e-09!27;CL:0002319!3.18e-09!25;CL:0000708!3.37e-08!3;CL:0000333!3.49e-07!41;CL:0000342!8.49e-07!1;CL:0002565!8.49e-07!1;CL:0000147!9.25e-07!14|ontology_enrichment_celltype_v019=CL:0002322;2.13e-58;5!CL:0002321;9.55e-28;15!CL:0000039;4.35e-27;7!CL:0000586;4.35e-27;7!CL:0000540;6.89e-18;6!CL:0000404;6.89e-18;6!CL:0000148;3.15e-11;10!CL:0000147;3.59e-08;14!CL:0000075;3.52e-07;27|ontology_enrichment_celltype_v019_2=CL:0002322,2.40e-58,5;CL:0000039,4.07e-27,7;CL:0000586,4.07e-27,7;CL:0000540,6.31e-18,6;CL:0000031,6.31e-18,6;CL:0000404,6.31e-18,6;CL:0000047,1.32e-13,8;CL:0000148,3.04e-11,10;CL:0000541,3.04e-11,10;CL:0000133,9.18e-09,59;CL:0000147,3.50e-08,14;CL:0000075,3.58e-07,27;CL:0000221,4.13e-07,72|ontology_enrichment_development_v019=UBERON:0009117;2.47e-29;10!UBERON:0005564;2.47e-29;10!CL:0000031;6.89e-18;6|ontology_enrichment_disease=DOID:3095!2.84e-24!22;DOID:2994!2.84e-24!22|ontology_enrichment_disease_v019=DOID:3095;1.26e-25;22!DOID:2994;1.26e-25;22|ontology_enrichment_disease_v019_2=DOID:3095,1.17e-25,22;DOID:2994,1.17e-25,22|ontology_enrichment_uberon=UBERON:0000488!1.68e-22!4;UBERON:0001778!2.02e-17!3;UBERON:0001775!2.02e-17!3;UBERON:0002203!4.53e-15!6;UBERON:0001768!4.53e-15!6;UBERON:0007625!1.55e-12!11;UBERON:0000473!5.94e-12!8;UBERON:0001801!8.42e-10!14;UBERON:0003135!1.03e-08!11;UBERON:0002200!2.82e-08!11;UBERON:0006876!2.82e-08!11;UBERON:0003210!3.37e-08!3;UBERON:0000019!3.72e-07!19;UBERON:0000047!3.72e-07!19;UBERON:0004088!3.72e-07!19;UBERON:0003072!3.72e-07!19;UBERON:0003071!3.72e-07!19;UBERON:0004128!3.72e-07!19;UBERON:0002506!8.49e-07!1;UBERON:0001769!8.49e-07!1;UBERON:0000991!8.72e-07!21;UBERON:0009196!8.72e-07!21;UBERON:0009117!8.72e-07!21;UBERON:0005564!8.72e-07!21;UBERON:0000970!8.75e-07!20|ontology_enrichment_uberon_v019=UBERON:0000473;9.45e-24;8!UBERON:0003135;2.28e-17;11!UBERON:0000991;5.57e-14;21!UBERON:0000922;1.25e-11;49!UBERON:0003101;8.31e-09;22!UBERON:0000079;8.31e-09;22|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.91e-24,8;UBERON:0003135,2.19e-17,11;UBERON:0000991,5.27e-14,21;UBERON:0009196,5.27e-14,21;UBERON:0009117,5.27e-14,21;UBERON:0005564,5.27e-14,21;UBERON:0004176,2.29e-13,22;UBERON:0003101,8.14e-09,22;UBERON:0000079,8.14e-09,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756278537312543,0.886917589850256,0.614843499851882,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17131635936948,3.31324420803713,4.18298194330266,1.7622379352613,6.05570042101508,5.10968302706162,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,1.04337364477569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28602518772015,1.65047323916681,3.32352270423348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04630994085843,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,4.66815771889792,21.9623799647028,0.380095503034311,4.38551967890521,3.74104367371785,1.10273879441814,5.51556586443225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p7@ZIC3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7547 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12874 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-45bp_to_ENST00000478471_5end | |||
|coexpression_cluster_id=C232 | |||
|description=CAGE_peak_7_at_ZIC3_5end | |||
|id=chrX:136650899..136650918,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.32e-29!5;CL:0000039!1.69e-20!7;CL:0000586!1.69e-20!7;CL:0000133!4.30e-20!59;CL:0000047!1.56e-17!8;CL:0000064!2.02e-17!3;CL:0005012!2.02e-17!3;CL:0000067!2.02e-17!3;CL:0002304!2.02e-17!3;CL:0000221!3.15e-16!71;CL:0000540!1.79e-15!6;CL:0000031!1.79e-15!6;CL:0000404!1.79e-15!6;CL:0000710!8.40e-10!20;CL:0000075!1.60e-09!27;CL:0002319!3.18e-09!25;CL:0000708!3.37e-08!3;CL:0000333!3.49e-07!41;CL:0000342!8.49e-07!1;CL:0002565!8.49e-07!1;CL:0000147!9.25e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.13e-58;5!CL:0002321;9.55e-28;15!CL:0000039;4.35e-27;7!CL:0000586;4.35e-27;7!CL:0000540;6.89e-18;6!CL:0000404;6.89e-18;6!CL:0000148;3.15e-11;10!CL:0000147;3.59e-08;14!CL:0000075;3.52e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.40e-58,5;CL:0000039,4.07e-27,7;CL:0000586,4.07e-27,7;CL:0000540,6.31e-18,6;CL:0000031,6.31e-18,6;CL:0000404,6.31e-18,6;CL:0000047,1.32e-13,8;CL:0000148,3.04e-11,10;CL:0000541,3.04e-11,10;CL:0000133,9.18e-09,59;CL:0000147,3.50e-08,14;CL:0000075,3.58e-07,27;CL:0000221,4.13e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.47e-29;10!UBERON:0005564;2.47e-29;10!CL:0000031;6.89e-18;6 | |||
|ontology_enrichment_disease=DOID:3095!2.84e-24!22;DOID:2994!2.84e-24!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.26e-25;22!DOID:2994;1.26e-25;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.17e-25,22;DOID:2994,1.17e-25,22 | |||
|ontology_enrichment_uberon=UBERON:0000488!1.68e-22!4;UBERON:0001778!2.02e-17!3;UBERON:0001775!2.02e-17!3;UBERON:0002203!4.53e-15!6;UBERON:0001768!4.53e-15!6;UBERON:0007625!1.55e-12!11;UBERON:0000473!5.94e-12!8;UBERON:0001801!8.42e-10!14;UBERON:0003135!1.03e-08!11;UBERON:0002200!2.82e-08!11;UBERON:0006876!2.82e-08!11;UBERON:0003210!3.37e-08!3;UBERON:0000019!3.72e-07!19;UBERON:0000047!3.72e-07!19;UBERON:0004088!3.72e-07!19;UBERON:0003072!3.72e-07!19;UBERON:0003071!3.72e-07!19;UBERON:0004128!3.72e-07!19;UBERON:0002506!8.49e-07!1;UBERON:0001769!8.49e-07!1;UBERON:0000991!8.72e-07!21;UBERON:0009196!8.72e-07!21;UBERON:0009117!8.72e-07!21;UBERON:0005564!8.72e-07!21;UBERON:0000970!8.75e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.45e-24;8!UBERON:0003135;2.28e-17;11!UBERON:0000991;5.57e-14;21!UBERON:0000922;1.25e-11;49!UBERON:0003101;8.31e-09;22!UBERON:0000079;8.31e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.91e-24,8;UBERON:0003135,2.19e-17,11;UBERON:0000991,5.27e-14,21;UBERON:0009196,5.27e-14,21;UBERON:0009117,5.27e-14,21;UBERON:0005564,5.27e-14,21;UBERON:0004176,2.29e-13,22;UBERON:0003101,8.14e-09,22;UBERON:0000079,8.14e-09,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756278537312543,0.886917589850256,0.614843499851882,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17131635936948,3.31324420803713,4.18298194330266,1.7622379352613,6.05570042101508,5.10968302706162,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,1.04337364477569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28602518772015,1.65047323916681,3.32352270423348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04630994085843,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,4.66815771889792,21.9623799647028,0.380095503034311,4.38551967890521,3.74104367371785,1.10273879441814,5.51556586443225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@ZIC3 | |||
}} |
Revision as of 10:54, 14 September 2013
Short description: | p7@ZIC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_ZIC3_5end |
Coexpression cluster: | C232_teratocarcinoma_HES3GFP_H9_iPS_testicular_neuroblastoma_cerebellum |
Association with transcript: | -45bp_to_ENST00000478471_5end |
EntrezGene: | ZIC3 |
HGNC: | 12874 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.40e-58 | 5 |
germ line cell | 4.07e-27 | 7 |
germ cell | 4.07e-27 | 7 |
neuron | 6.31e-18 | 6 |
neuroblast | 6.31e-18 | 6 |
electrically signaling cell | 6.31e-18 | 6 |
neuronal stem cell | 1.32e-13 | 8 |
melanocyte | 3.04e-11 | 10 |
melanoblast | 3.04e-11 | 10 |
neurectodermal cell | 9.18e-09 | 59 |
pigment cell | 3.50e-08 | 14 |
columnar/cuboidal epithelial cell | 3.58e-07 | 27 |
ectodermal cell | 4.13e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 8.91e-24 | 8 |
male reproductive organ | 2.19e-17 | 11 |
gonad | 5.27e-14 | 21 |
indifferent external genitalia | 5.27e-14 | 21 |
indifferent gonad | 5.27e-14 | 21 |
gonad primordium | 5.27e-14 | 21 |
external genitalia | 2.29e-13 | 22 |
male organism | 8.14e-09 | 22 |
male reproductive system | 8.14e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.17e-25 | 22 |
germ cell cancer | 1.17e-25 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.