FFCP PHASE1:Mm9::chr5:9161692..9161762,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=23857|HGNC=|MCL_coexpression_id=298|UniProt=Q8CE22|association_with_transcript=0bp_to_ENSMUST00000071921,ENSMUST00000095017_5end|description=CAGE_peak_1_at_Dmtf1_5end|id=chr5:9161692..9161762,-|ontology_enrichment_celltype=CL:0000542!1.22e-07!13;CL:0000051!1.22e-07!13;CL:0000838!3.40e-07!12;CL:0000791!4.95e-07!9;CL:0000789!4.95e-07!9;CL:0002420!4.95e-07!9;CL:0002419!4.95e-07!9;CL:0000790!4.95e-07!9;CL:0000084!9.85e-07!11;CL:0000827!9.85e-07!11|ontology_enrichment_celltype_v019_2=CL:0000542,1.22e-07,13;CL:0000051,1.22e-07,13;CL:0000838,3.40e-07,12;CL:0000791,4.95e-07,9;CL:0000789,4.95e-07,9;CL:0002420,4.95e-07,9;CL:0002419,4.95e-07,9;CL:0000790,4.95e-07,9;CL:0000084,9.85e-07,11;CL:0000827,9.85e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.05e-11!94;UBERON:0007811!5.34e-09!86;UBERON:0000065!2.07e-07!41;UBERON:0002370!4.08e-07!23;UBERON:0000974!4.08e-07!23;UBERON:0004807!4.08e-07!23;UBERON:0005058!4.08e-07!23;UBERON:0003351!4.08e-07!23;UBERON:0009113!4.08e-07!23;UBERON:0003295!4.08e-07!23;UBERON:0009722!4.08e-07!23;UBERON:0005562!4.08e-07!23;UBERON:0007690!4.08e-07!23;UBERON:0001004!5.92e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0000153,3.20e-11,43;UBERON:0007811,7.43e-09,36;UBERON:0000065,2.07e-07,41;UBERON:0002370,4.08e-07,23;UBERON:0000974,4.08e-07,23;UBERON:0004807,4.08e-07,23;UBERON:0005058,4.08e-07,23;UBERON:0003351,4.08e-07,23;UBERON:0009113,4.08e-07,23;UBERON:0003295,4.08e-07,23;UBERON:0009722,4.08e-07,23;UBERON:0005562,4.08e-07,23;UBERON:0007690,4.08e-07,23;UBERON:0001004,5.92e-07,42|phase1_expression=51.0874822264293,24.4282785347553,28.2099528421512,39.6228116811947,33.5600139064053,20.1455126294268,24.0621019813391,118.147840949042,163.03334025163,185.379104847019,75.1646880509967,73.9487913886769,102.891638688655,114.608147571306,17.9879271380458,28.7514879693553,20.9868563438444,75.5531886032979,77.1954261200309,64.5072270733006,34.8677489619386,45.4752556500055,41.2695666839518,25.1188103785648,21.564472420314,21.8208146363708,17.230479846363,18.7459972436723,20.332505881832,20.9185007700743,15.7428662565266,13.3356441426523,17.221814052368,15.8481681015439,20.5084650023405,18.1195763440757,20.0085969137122,98.7734648539102,41.4107732597614,87.9519889875981,104.11697338149,101.773777258808,110.210850138072,45.4487512891834,40.9562802126839,38.9119114582765,8.60630478782843,5.88667922227206,5.05278220289285,12.0546537426056,12.4587915246573,10.062679505548,62.5829120595357,73.2615763431458,64.1939156362106,43.9913635621469,32.6648121530183,42.8007836590277,30.7521020506589,42.8482693210347,24.0855933332348,8.13226876965917,9.78224275722253,4.04954872776629,8.89979726310277,1.4209602298922,5.69240209984969,9.60545763303886,45.2086709664963,24.0310570230409,28.1835448210852,12.5686433137674,14.3564551618549,43.7292153197386,35.4628242767475,39.5264078242309,37.4393995397922,40.7322608491749,33.4862242498611,29.8063010270238,35.5886933613374,43.7567231267678,24.2889209131201,34.8912818219642,37.7411672008721,33.5876587439981,43.7081060053246,38.3982858400119,39.7562514999216,34.0072020480535,37.1026545538148,22.371020801516,21.0791113449403,15.1116893658589,31.1892680374881,28.2256938871321,26.1226621445058,28.9731548382698,19.2241643406123,16.2536204274756,41.2671219945674,29.5150898052931,17.8363667794652,7.11066703153331,23.1645413881999,25.8427062784601,18.1988800205322,25.2346374179123,124.290184150642,36.6652083490117,26.5432549952188,43.2340979203241,29.0575526542634,35.1183752487611,36.8052653334756,24.002318943968,30.1577860635936,38.8972270114562,30.0767587662957,29.4415666904285,33.3470692875194,37.8202697445473,33.550517019262,72.3168568618521,62.4151186304096,38.3185582812887,25.8800668932788,16.197373736822,23.7621324626631,58.1187680890712,56.7300747495097,49.7591234366943,63.0982282297964,55.4902542406817,53.6093154963665,56.4599595475797,40.3283880847252,40.9298933307206,29.5685627367399,37.2482084919059,60.1156446487691,44.1412040512268,54.1987010714101,67.9678728439075,50.0748633753773,61.8789268975824,57.345455430554,75.2826808850536,40.0956466855087,73.5622651852817,64.3981114440053,49.5382355286319,72.8483792971066,48.058798980059,66.2618479233578,56.3266975096336,23.1730351813367,13.1247432628505,15.344828967362,36.4541359662483,50.4231028959357,41.7743982589555,39.0628813715597,44.2719521431659,41.0350520280426,39.2982366628189,37.0217293931474,27.3230901139177,29.127093434686,39.2360239149038,35.2649321524472,32.3101972209984,32.2738669477844,28.7201736147196,46.6843685812362,45.2780294468851,47.9107235326507,26.1806060996909,61.2137279036121,57.5946946213888,47.2943583052082,37.3114520553184,37.5818894097831,35.5721920830486,26.0990983849481,23.7166494802576,30.4115602648326,30.4403402222961,37.8230329011093,30.5598598942435,30.9077411320813,28.8754846218832,23.5188197181821,44.3284228925748,40.574784842309,51.9310886005551,43.0574521512129,31.6312547705337,36.9301376805663,37.3453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| ||
|EntrezGene=23857 | |||
|HGNC= | |||
|MCL_coexpression_id=298 | |||
|UniProt=Q8CE22 | |||
|association_with_transcript=0bp_to_ENSMUST00000071921,ENSMUST00000095017_5end | |||
|description=CAGE_peak_1_at_Dmtf1_5end | |||
|id=chr5:9161692..9161762,- | |||
|ontology_enrichment_celltype=CL:0000542!1.22e-07!13;CL:0000051!1.22e-07!13;CL:0000838!3.40e-07!12;CL:0000791!4.95e-07!9;CL:0000789!4.95e-07!9;CL:0002420!4.95e-07!9;CL:0002419!4.95e-07!9;CL:0000790!4.95e-07!9;CL:0000084!9.85e-07!11;CL:0000827!9.85e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.22e-07,13;CL:0000051,1.22e-07,13;CL:0000838,3.40e-07,12;CL:0000791,4.95e-07,9;CL:0000789,4.95e-07,9;CL:0002420,4.95e-07,9;CL:0002419,4.95e-07,9;CL:0000790,4.95e-07,9;CL:0000084,9.85e-07,11;CL:0000827,9.85e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.05e-11!94;UBERON:0007811!5.34e-09!86;UBERON:0000065!2.07e-07!41;UBERON:0002370!4.08e-07!23;UBERON:0000974!4.08e-07!23;UBERON:0004807!4.08e-07!23;UBERON:0005058!4.08e-07!23;UBERON:0003351!4.08e-07!23;UBERON:0009113!4.08e-07!23;UBERON:0003295!4.08e-07!23;UBERON:0009722!4.08e-07!23;UBERON:0005562!4.08e-07!23;UBERON:0007690!4.08e-07!23;UBERON:0001004!5.92e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,3.20e-11,43;UBERON:0007811,7.43e-09,36;UBERON:0000065,2.07e-07,41;UBERON:0002370,4.08e-07,23;UBERON:0000974,4.08e-07,23;UBERON:0004807,4.08e-07,23;UBERON:0005058,4.08e-07,23;UBERON:0003351,4.08e-07,23;UBERON:0009113,4.08e-07,23;UBERON:0003295,4.08e-07,23;UBERON:0009722,4.08e-07,23;UBERON:0005562,4.08e-07,23;UBERON:0007690,4.08e-07,23;UBERON:0001004,5.92e-07,42 | |||
|phase1_expression=51.0874822264293,24.4282785347553,28.2099528421512,39.6228116811947,33.5600139064053,20.1455126294268,24.0621019813391,118.147840949042,163.03334025163,185.379104847019,75.1646880509967,73.9487913886769,102.891638688655,114.608147571306,17.9879271380458,28.7514879693553,20.9868563438444,75.5531886032979,77.1954261200309,64.5072270733006,34.8677489619386,45.4752556500055,41.2695666839518,25.1188103785648,21.564472420314,21.8208146363708,17.230479846363,18.7459972436723,20.332505881832,20.9185007700743,15.7428662565266,13.3356441426523,17.221814052368,15.8481681015439,20.5084650023405,18.1195763440757,20.0085969137122,98.7734648539102,41.4107732597614,87.9519889875981,104.11697338149,101.773777258808,110.210850138072,45.4487512891834,40.9562802126839,38.9119114582765,8.60630478782843,5.88667922227206,5.05278220289285,12.0546537426056,12.4587915246573,10.062679505548,62.5829120595357,73.2615763431458,64.1939156362106,43.9913635621469,32.6648121530183,42.8007836590277,30.7521020506589,42.8482693210347,24.0855933332348,8.13226876965917,9.78224275722253,4.04954872776629,8.89979726310277,1.4209602298922,5.69240209984969,9.60545763303886,45.2086709664963,24.0310570230409,28.1835448210852,12.5686433137674,14.3564551618549,43.7292153197386,35.4628242767475,39.5264078242309,37.4393995397922,40.7322608491749,33.4862242498611,29.8063010270238,35.5886933613374,43.7567231267678,24.2889209131201,34.8912818219642,37.7411672008721,33.5876587439981,43.7081060053246,38.3982858400119,39.7562514999216,34.0072020480535,37.1026545538148,22.371020801516,21.0791113449403,15.1116893658589,31.1892680374881,28.2256938871321,26.1226621445058,28.9731548382698,19.2241643406123,16.2536204274756,41.2671219945674,29.5150898052931,17.8363667794652,7.11066703153331,23.1645413881999,25.8427062784601,18.1988800205322,25.2346374179123,124.290184150642,36.6652083490117,26.5432549952188,43.2340979203241,29.0575526542634,35.1183752487611,36.8052653334756,24.002318943968,30.1577860635936,38.8972270114562,30.0767587662957,29.4415666904285,33.3470692875194,37.8202697445473,33.550517019262,72.3168568618521,62.4151186304096,38.3185582812887,25.8800668932788,16.197373736822,23.7621324626631,58.1187680890712,56.7300747495097,49.7591234366943,63.0982282297964,55.4902542406817,53.6093154963665,56.4599595475797,40.3283880847252,40.9298933307206,29.5685627367399,37.2482084919059,60.1156446487691,44.1412040512268,54.1987010714101,67.9678728439075,50.0748633753773,61.8789268975824,57.345455430554,75.2826808850536,40.0956466855087,73.5622651852817,64.3981114440053,49.5382355286319,72.8483792971066,48.058798980059,66.2618479233578,56.3266975096336,23.1730351813367,13.1247432628505,15.344828967362,36.4541359662483,50.4231028959357,41.7743982589555,39.0628813715597,44.2719521431659,41.0350520280426,39.2982366628189,37.0217293931474,27.3230901139177,29.127093434686,39.2360239149038,35.2649321524472,32.3101972209984,32.2738669477844,28.7201736147196,46.6843685812362,45.2780294468851,47.9107235326507,26.1806060996909,61.2137279036121,57.5946946213888,47.2943583052082,37.3114520553184,37.5818894097831,35.5721920830486,26.0990983849481,23.7166494802576,30.4115602648326,30.4403402222961,37.8230329011093,30.5598598942435,30.9077411320813,28.8754846218832,23.5188197181821,44.3284228925748,40.574784842309,51.9310886005551,43.0574521512129,31.6312547705337,36.9301376805663,37.3453674388393,34.0687239415783,26.9005817349525,25.1984733024077,30.6994994517613,26.142346350056,23.6105218004096,27.1832562660594,28.4589048507852,28.7727212513004,32.2219673944908,23.3474726556051,26.3578956660558,28.7536413054709,36.4698128715133,31.5158049845706,31.572359743389,29.0623809905498,26.5343936749852,49.3291017744834,49.267767060326,52.8006523672164,48.5470945317038,57.7338010789715,58.6271901046355,63.0815648347936,34.5386556708304,53.9112192843173,43.8500085504574,41.6176946196041,54.402620485625,43.1712454664739,47.7341893318988,19.6028669121054,20.668415985111,25.5717421969899,25.6621174063401,53.9449982358981,57.3165147435874,34.4263385291018,23.2273253028023,44.1711507182759,50.3665980142664,49.331958080811,43.4923212273645,47.6789162536323,45.0091683954244,32.7896668356664,49.3912399870117,54.1544255786737,52.6966958931764,42.0142652216475,31.8737430564387,33.3918266674831,46.1916344323099,34.5137359683903,33.9892890616974,32.6509441521931,37.5324108714237,20.3758306087733,46.730142487477,23.5169746783081,25.0838273339479,37.7887221087805,43.6130725951426,32.6797686582496,37.1287955693473,41.5336319019621,55.9990002437375,23.8019978160268,38.7950033407182,59.0542978028771,38.8844022372514,50.352000304249,19.4857567433344,39.4248469547033,42.5782462436279,33.9613733004641,39.4078144530137,38.1056047002337,40.8318501763615,34.976096792919,45.1387474298918,33.228815375803,59.7069472473841,36.7372393715383,37.7687968372697,47.9653825887553,36.9202175729194,46.7494258805906,37.7483985790762,44.0244133684085,40.4459697215372,40.0779924032829,24.821436068393,44.91971108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| |||
|short_description=p1@Dmtf1 | |||
}} | |||
Revision as of 08:19, 14 September 2013
| Short description: | p1@Dmtf1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Dmtf1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:298 |
| Association with transcript: | 0bp_to_ENSMUST00000071921, ENSMUST00000095017_5end |
| EntrezGene: | Dmtf1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| lymphocyte | 1.22e-07 | 13 |
| common lymphoid progenitor | 1.22e-07 | 13 |
| lymphoid lineage restricted progenitor cell | 3.40e-07 | 12 |
| mature alpha-beta T cell | 4.95e-07 | 9 |
| alpha-beta T cell | 4.95e-07 | 9 |
| immature T cell | 4.95e-07 | 9 |
| mature T cell | 4.95e-07 | 9 |
| immature alpha-beta T cell | 4.95e-07 | 9 |
| T cell | 9.85e-07 | 11 |
| pro-T cell | 9.85e-07 | 11 |
| Ontology term | p-value | n |
|---|---|---|
| anterior region of body | 3.20e-11 | 43 |
| craniocervical region | 7.43e-09 | 36 |
| respiratory tract | 2.07e-07 | 41 |
| thymus | 4.08e-07 | 23 |
| neck | 4.08e-07 | 23 |
| respiratory system epithelium | 4.08e-07 | 23 |
| hemolymphoid system gland | 4.08e-07 | 23 |
| pharyngeal epithelium | 4.08e-07 | 23 |
| thymic region | 4.08e-07 | 23 |
| pharyngeal gland | 4.08e-07 | 23 |
| entire pharyngeal arch endoderm | 4.08e-07 | 23 |
| thymus primordium | 4.08e-07 | 23 |
| early pharyngeal endoderm | 4.08e-07 | 23 |
| respiratory system | 5.92e-07 | 42 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
