FFCP PHASE1:Hg19::chr9:112260599..112260606,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5774|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9655|TSSclassifier=S|UniProt=P26045,B7Z9V1,Q8N4S3|association_with_transcript=-6bp_to_ENST00000394831,NM_001145368,NM_002829,uc004bed.2,uc004bee.3,uc011lwg.1,uc011lwh.1_5end|description=CAGE_peak_2_at_PTPN3_5end|id=chr9:112260599..112260606,-|ontology_enrichment_celltype=CL:0000066!4.63e-21!254;CL:0000223!1.30e-10!59;CL:0002076!1.50e-08!43|ontology_enrichment_celltype_v019=CL:0000167;1.08e-07;1!CL:0000164;1.08e-07;1!CL:0000502;1.08e-07;1!CL:0000172;1.08e-07;1!CL:0000173;1.08e-07;1|ontology_enrichment_celltype_v019_2=CL:0000167,1.06e-07,1;CL:0000164,1.06e-07,1;CL:0000502,1.06e-07,1;CL:0000172,1.06e-07,1;CL:0000173,1.06e-07,1;CL:0002351,1.06e-07,1|ontology_enrichment_development_v019=CL:0002351;1.08e-07;1|ontology_enrichment_disease=DOID:305!5.39e-24!106;DOID:0050687!9.63e-24!143;DOID:162!5.85e-12!235;DOID:14566!1.50e-11!239;DOID:299!7.01e-07!25|ontology_enrichment_disease_v019=DOID:4929;8.45e-13;2!DOID:4430;1.08e-07;1|ontology_enrichment_disease_v019_2=DOID:4929,6.32e-13,2;DOID:4430,1.06e-07,1|ontology_enrichment_uberon=UBERON:0004119!4.92e-15!169;UBERON:0000925!4.92e-15!169;UBERON:0006595!4.92e-15!169;UBERON:0001007!1.45e-13!155;UBERON:0001555!1.45e-13!155;UBERON:0007026!1.45e-13!155;UBERON:0000481!1.36e-11!347;UBERON:0004921!5.19e-11!129;UBERON:0004185!5.19e-11!129;UBERON:0000077!1.99e-09!130;UBERON:0001041!8.13e-09!98;UBERON:0005177!2.24e-08!107;UBERON:0000062!3.15e-08!511;UBERON:0000064!9.05e-08!219;UBERON:0000466!1.58e-07!126;UBERON:0001004!1.72e-07!72;UBERON:0005911!1.96e-07!82;UBERON:0002050!2.40e-07!605;UBERON:0005423!2.40e-07!605;UBERON:0000923!4.00e-07!604;UBERON:0005291!4.00e-07!604;UBERON:0006598!4.00e-07!604;UBERON:0002532!4.00e-07!604;UBERON:0000922!4.50e-07!612;UBERON:0000065!8.36e-07!53|ontology_enrichment_uberon_v019=UBERON:0002108;3.30e-11;4!UBERON:0005631;1.24e-09;10!UBERON:0000158;1.24e-09;10!UBERON:0002114;7.99e-09;2!UBERON:0000305;3.86e-08;7!UBERON:0004913;3.10e-07;1!UBERON:0003703;3.10e-07;1!UBERON:0001174;3.10e-07;1!UBERON:0004914;3.10e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002108,3.26e-11,4;UBERON:0002114,8.36e-09,2;UBERON:0000305,2.78e-08,7;UBERON:0004913,1.44e-07,1;UBERON:0003703,1.44e-07,1;UBERON:0001174,1.44e-07,1;UBERON:0004914,1.44e-07,1;UBERON:0004871,2.67e-07,8;UBERON:0005177,2.79e-07,101;UBERON:0005631,5.39e-07,14;UBERON:0000158,5.39e-07,14|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.0945348171640679,0,0.087834785693126,0.327447688744282,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0,0,0.942974704487816,0.326923806226917,0.302714855289863,0,0,0,0,0.149448680551801,0.352303495931295,0,0.140450806702248,0.408308342509787,0.245668634623536,0.206651562351531,0,0,0,0,0,0,0,0,0,0.45071417671979,0.226864366320042,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.482022059766964,0.441175890929576,0.435758888184812,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,2.94848165003288,1.18157981336281,0,0.122988438543114,0.171567810298526,0.329250856225877,0,0.502644862058154,0.185176890317059,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0.16798212819886,0.425325291727159,0.53735113621709,0.290633938513962,1.15014803749563,0,0,0,0,0,0.253991577168676,0.381988425558278,0,0,0.205654985406647,0,0.571652865261156,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.36807447515742,0,0.813795071099207,0.207970861530807,0,0.315404830067869,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0.40101294060657,0.552485933615378,0,0,0,0.451199612907412,0.770153371044148,0,1.46139224653261,1.16106791782163,0,0,0.431831832204279,0,0.270946437543853,0.501689773854853,0.764628819135115,1.66215201785745,0.671624264166535,0,0,0.512900250232778,0,0.325378394664303,0.721287081534056,0.915694648183434,1.65018999841176,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0.107420244868274,0.145016693914229,0,0.0890320356467374,0.165284915360978,0.768760269460425,1.78657797492418,1.0115778085555,0,0,0,0.308033580176089,0,0,0,0.286249773483982,0.372158369359667,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5774 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9655 | |||
|TSSclassifier=S | |||
|UniProt=P26045,B7Z9V1,Q8N4S3 | |||
|association_with_transcript=-6bp_to_ENST00000394831,NM_001145368,NM_002829,uc004bed.2,uc004bee.3,uc011lwg.1,uc011lwh.1_5end | |||
|description=CAGE_peak_2_at_PTPN3_5end | |||
|id=chr9:112260599..112260606,- | |||
|ontology_enrichment_celltype=CL:0000066!4.63e-21!254;CL:0000223!1.30e-10!59;CL:0002076!1.50e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0000167;1.08e-07;1!CL:0000164;1.08e-07;1!CL:0000502;1.08e-07;1!CL:0000172;1.08e-07;1!CL:0000173;1.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,1.06e-07,1;CL:0000164,1.06e-07,1;CL:0000502,1.06e-07,1;CL:0000172,1.06e-07,1;CL:0000173,1.06e-07,1;CL:0002351,1.06e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.08e-07;1 | |||
|ontology_enrichment_disease=DOID:305!5.39e-24!106;DOID:0050687!9.63e-24!143;DOID:162!5.85e-12!235;DOID:14566!1.50e-11!239;DOID:299!7.01e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:4929;8.45e-13;2!DOID:4430;1.08e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,6.32e-13,2;DOID:4430,1.06e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.92e-15!169;UBERON:0000925!4.92e-15!169;UBERON:0006595!4.92e-15!169;UBERON:0001007!1.45e-13!155;UBERON:0001555!1.45e-13!155;UBERON:0007026!1.45e-13!155;UBERON:0000481!1.36e-11!347;UBERON:0004921!5.19e-11!129;UBERON:0004185!5.19e-11!129;UBERON:0000077!1.99e-09!130;UBERON:0001041!8.13e-09!98;UBERON:0005177!2.24e-08!107;UBERON:0000062!3.15e-08!511;UBERON:0000064!9.05e-08!219;UBERON:0000466!1.58e-07!126;UBERON:0001004!1.72e-07!72;UBERON:0005911!1.96e-07!82;UBERON:0002050!2.40e-07!605;UBERON:0005423!2.40e-07!605;UBERON:0000923!4.00e-07!604;UBERON:0005291!4.00e-07!604;UBERON:0006598!4.00e-07!604;UBERON:0002532!4.00e-07!604;UBERON:0000922!4.50e-07!612;UBERON:0000065!8.36e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;3.30e-11;4!UBERON:0005631;1.24e-09;10!UBERON:0000158;1.24e-09;10!UBERON:0002114;7.99e-09;2!UBERON:0000305;3.86e-08;7!UBERON:0004913;3.10e-07;1!UBERON:0003703;3.10e-07;1!UBERON:0001174;3.10e-07;1!UBERON:0004914;3.10e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,3.26e-11,4;UBERON:0002114,8.36e-09,2;UBERON:0000305,2.78e-08,7;UBERON:0004913,1.44e-07,1;UBERON:0003703,1.44e-07,1;UBERON:0001174,1.44e-07,1;UBERON:0004914,1.44e-07,1;UBERON:0004871,2.67e-07,8;UBERON:0005177,2.79e-07,101;UBERON:0005631,5.39e-07,14;UBERON:0000158,5.39e-07,14 | |||
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| |||
|short_description=p2@PTPN3 | |||
}} |
Revision as of 06:53, 14 September 2013
Short description: | p2@PTPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PTPN3_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_ENST00000394831, NM_001145368, NM_002829, uc004bed.2, uc004bee.3, uc011lwg.1, uc011lwh.1_5end |
EntrezGene: | PTPN3 |
HGNC: | 9655 |
UniProt: | P26045B7Z9V1Q8N4S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 1.06e-07 | 1 |
enteroendocrine cell | 1.06e-07 | 1 |
type D enteroendocrine cell | 1.06e-07 | 1 |
somatostatin secreting cell | 1.06e-07 | 1 |
pancreatic D cell | 1.06e-07 | 1 |
progenitor cell of endocrine pancreas | 1.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
small intestine | 3.26e-11 | 4 |
duodenum | 8.36e-09 | 2 |
amnion | 2.78e-08 | 7 |
hepatopancreatic ampulla | 1.44e-07 | 1 |
extrahepatic bile duct | 1.44e-07 | 1 |
common bile duct | 1.44e-07 | 1 |
duodenal papilla | 1.44e-07 | 1 |
somatic layer of lateral plate mesoderm | 2.67e-07 | 8 |
trunk region element | 2.79e-07 | 101 |
extraembryonic membrane | 5.39e-07 | 14 |
membranous layer | 5.39e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 6.32e-13 | 2 |
somatostatinoma | 1.06e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.