FFCP PHASE1:Hg19::chr9:107651937..107651972,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=19|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=29|TSSclassifier=N|UniProt=O95477|association_with_transcript=-461bp_to_AF165281,AJ012376_5end|coexpression_cluster_id=C55|description=CAGE_peak_3_at_ABCA1_5end|id=chr9:107651937..107651972,-|ontology_enrichment_celltype=CL:0002535!8.99e-13!2;CL:0000181!7.77e-09!12;CL:0000417!7.77e-09!12;CL:0000668!7.77e-09!12;CL:0000414!7.77e-09!12;CL:0000412!7.77e-09!12;CL:0000182!7.77e-09!12;CL:0002563!2.35e-07!4|ontology_enrichment_celltype_v019=CL:0000182;1.05e-24;12!CL:0002563;5.39e-19;4!CL:0002253;2.85e-10;2!CL:0002231;2.88e-07;3|ontology_enrichment_celltype_v019_2=CL:0000182,1.05e-24,12;CL:0002563,4.70e-19,4;CL:0000223,4.76e-15,58;CL:0002253,2.49e-10,2;CL:0002231,2.79e-07,3|ontology_enrichment_development_v019=UBERON:0004161;2.91e-41;11!UBERON:0009497;5.77e-35;13!UBERON:0003104;5.61e-21;31!UBERON:0001041;2.85e-15;30!CL:0000223;2.09e-09;58|ontology_enrichment_disease=DOID:4362!3.18e-11!5|ontology_enrichment_disease_v019=DOID:7;2.03e-07;39|ontology_enrichment_disease_v019_2=DOID:7,7.64e-08,39|ontology_enrichment_uberon=UBERON:0006955!8.99e-13!2;UBERON:0004801!8.99e-13!2;UBERON:0002107!1.21e-11!19;UBERON:0006925!1.21e-11!19;UBERON:0008836!1.21e-11!19;UBERON:0008835!5.64e-10!22;UBERON:0003894!5.64e-10!22;UBERON:0009854!1.63e-09!23;UBERON:0000002!1.95e-09!6;UBERON:0001560!1.95e-09!6;UBERON:0007499!1.05e-08!25;UBERON:0009497!1.05e-08!25;UBERON:0000015!1.05e-08!25;UBERON:0002423!1.05e-08!25;UBERON:0006235!1.05e-08!25;UBERON:0004161!1.05e-08!25;UBERON:0005057!2.40e-08!26;UBERON:0009856!2.40e-08!26;UBERON:0003929!4.18e-08!54;UBERON:0005418!1.61e-07!1;UBERON:0001389!1.61e-07!1;UBERON:0000026!1.61e-07!1;UBERON:0008784!1.61e-07!1;UBERON:0006058!1.61e-07!1;UBERON:0003663!1.61e-07!1;UBERON:0001383!1.61e-07!1;UBERON:0004256!1.61e-07!1;UBERON:0002529!1.61e-07!1;UBERON:0004708!1.61e-07!1;UBERON:0002101!1.61e-07!1;UBERON:0004709!1.61e-07!1;UBERON:0003661!1.61e-07!1;UBERON:0002471!1.61e-07!1;UBERON:0004357!1.61e-07!1;UBERON:0009872!1.61e-07!1;UBERON:0004347!1.61e-07!1;UBERON:0005420!1.61e-07!1;UBERON:0005732!1.61e-07!1;UBERON:0006057!1.61e-07!1;UBERON:0000978!1.61e-07!1;UBERON:0002103!1.61e-07!1;UBERON:0001665!1.61e-07!1;UBERON:0003823!1.61e-07!1;UBERON:0000154!1.61e-07!1;UBERON:0005733!1.61e-07!1;UBERON:0005730!1.61e-07!1;UBERON:0001242!2.35e-07!4;UBERON:0001262!2.35e-07!4;UBERON:0004786!2.35e-07!4;UBERON:0004808!2.35e-07!4;UBERON:0001277!2.35e-07!4;UBERON:0002372!4.61e-07!1;UBERON:0001961!4.61e-07!1;UBERON:0001744!4.61e-07!1;UBERON:0001735!4.61e-07!1;UBERON:0002365!6.67e-07!31;UBERON:0002330!6.67e-07!31|ontology_enrichment_uberon_v019=UBERON:0002107;5.22e-24;19!UBERON:0006925;5.22e-24;19!UBERON:0001242;5.39e-19;4!UBERON:0001262;5.39e-19;4!UBERON:0004786;5.39e-19;4!UBERON:0004808;5.39e-19;4!UBERON:0001277;5.39e-19;4!UBERON:0002423;2.70e-18;25!UBERON:0002365;1.04e-13;31!UBERON:0002330;1.04e-13;31!UBERON:0002368;3.49e-13;33!UBERON:0000485;2.76e-11;7!UBERON:0003929;2.76e-11;7!UBERON:0003350;5.41e-10;8!UBERON:0000949;1.03e-08;43!UBERON:0002530;3.74e-07;57|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.35e-24,19;UBERON:0006925,5.35e-24,19;UBERON:0008836,5.35e-24,19;UBERON:0003929,5.21e-21,54;UBERON:0008835,9.36e-21,22;UBERON:0003894,9.36e-21,22;UBERON:0009854,7.33e-20,23;UBERON:0001242,4.70e-19,4;UBERON:0001262,4.70e-19,4;UBERON:0004786,4.70e-19,4;UBERON:0004808,4.70e-19,4;UBERON:0001277,4.70e-19,4;UBERON:0007499,2.75e-18,25;UBERON:0009497,2.75e-18,25;UBERON:0000015,2.75e-18,25;UBERON:0002423,2.75e-18,25;UBERON:0006235,2.75e-18,25;UBERON:0004161,2.75e-18,25;UBERON:0009856,1.37e-17,26;UBERON:0002365,8.91e-15,31;UBERON:0002330,8.91e-15,31;UBERON:0005911,1.07e-13,82;UBERON:0002368,4.22e-13,35;UBERON:0002530,5.97e-11,59;UBERON:0000949,3.30e-10,45;UBERON:0003350,5.06e-10,8;UBERON:0004921,2.77e-09,118;UBERON:0000485,5.20e-09,9;UBERON:0005172,1.64e-08,54;UBERON:0005173,1.64e-08,54;UBERON:0002417,1.16e-07,60;UBERON:0000916,1.16e-07,60;UBERON:0001007,1.84e-07,145;UBERON:0001555,1.84e-07,145;UBERON:0007026,1.84e-07,145;UBERON:0000490,2.37e-07,148|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,1.26160425437814,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93563003337963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=19 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=29 | |||
|TSSclassifier=N | |||
|UniProt=O95477 | |||
|association_with_transcript=-461bp_to_AF165281,AJ012376_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_3_at_ABCA1_5end | |||
|id=chr9:107651937..107651972,- | |||
|ontology_enrichment_celltype=CL:0002535!8.99e-13!2;CL:0000181!7.77e-09!12;CL:0000417!7.77e-09!12;CL:0000668!7.77e-09!12;CL:0000414!7.77e-09!12;CL:0000412!7.77e-09!12;CL:0000182!7.77e-09!12;CL:0002563!2.35e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.05e-24;12!CL:0002563;5.39e-19;4!CL:0002253;2.85e-10;2!CL:0002231;2.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.05e-24,12;CL:0002563,4.70e-19,4;CL:0000223,4.76e-15,58;CL:0002253,2.49e-10,2;CL:0002231,2.79e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.91e-41;11!UBERON:0009497;5.77e-35;13!UBERON:0003104;5.61e-21;31!UBERON:0001041;2.85e-15;30!CL:0000223;2.09e-09;58 | |||
|ontology_enrichment_disease=DOID:4362!3.18e-11!5 | |||
|ontology_enrichment_disease_v019=DOID:7;2.03e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,7.64e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0006955!8.99e-13!2;UBERON:0004801!8.99e-13!2;UBERON:0002107!1.21e-11!19;UBERON:0006925!1.21e-11!19;UBERON:0008836!1.21e-11!19;UBERON:0008835!5.64e-10!22;UBERON:0003894!5.64e-10!22;UBERON:0009854!1.63e-09!23;UBERON:0000002!1.95e-09!6;UBERON:0001560!1.95e-09!6;UBERON:0007499!1.05e-08!25;UBERON:0009497!1.05e-08!25;UBERON:0000015!1.05e-08!25;UBERON:0002423!1.05e-08!25;UBERON:0006235!1.05e-08!25;UBERON:0004161!1.05e-08!25;UBERON:0005057!2.40e-08!26;UBERON:0009856!2.40e-08!26;UBERON:0003929!4.18e-08!54;UBERON:0005418!1.61e-07!1;UBERON:0001389!1.61e-07!1;UBERON:0000026!1.61e-07!1;UBERON:0008784!1.61e-07!1;UBERON:0006058!1.61e-07!1;UBERON:0003663!1.61e-07!1;UBERON:0001383!1.61e-07!1;UBERON:0004256!1.61e-07!1;UBERON:0002529!1.61e-07!1;UBERON:0004708!1.61e-07!1;UBERON:0002101!1.61e-07!1;UBERON:0004709!1.61e-07!1;UBERON:0003661!1.61e-07!1;UBERON:0002471!1.61e-07!1;UBERON:0004357!1.61e-07!1;UBERON:0009872!1.61e-07!1;UBERON:0004347!1.61e-07!1;UBERON:0005420!1.61e-07!1;UBERON:0005732!1.61e-07!1;UBERON:0006057!1.61e-07!1;UBERON:0000978!1.61e-07!1;UBERON:0002103!1.61e-07!1;UBERON:0001665!1.61e-07!1;UBERON:0003823!1.61e-07!1;UBERON:0000154!1.61e-07!1;UBERON:0005733!1.61e-07!1;UBERON:0005730!1.61e-07!1;UBERON:0001242!2.35e-07!4;UBERON:0001262!2.35e-07!4;UBERON:0004786!2.35e-07!4;UBERON:0004808!2.35e-07!4;UBERON:0001277!2.35e-07!4;UBERON:0002372!4.61e-07!1;UBERON:0001961!4.61e-07!1;UBERON:0001744!4.61e-07!1;UBERON:0001735!4.61e-07!1;UBERON:0002365!6.67e-07!31;UBERON:0002330!6.67e-07!31 | |||
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|short_description=p3@ABCA1 | |||
}} |
Revision as of 06:46, 14 September 2013
Short description: | p3@ABCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ABCA1_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -461bp_to_AF165281, AJ012376_5end |
EntrezGene: | ABCA1 |
HGNC: | 29 |
UniProt: | O95477 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.05e-24 | 12 |
intestinal epithelial cell | 4.70e-19 | 4 |
endodermal cell | 4.76e-15 | 58 |
epithelial cell of large intestine | 2.49e-10 | 2 |
epithelial cell of prostate | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 7.64e-08 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.