FFCP PHASE1:Mm9::chr4:45811888..45811928,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72535|HGNC=|UniProt=Q9CZS1,B1AWX7|association_with_transcript=0bp_to_ENSMUST00000044384,NM_028270,uc008ssx.1_5end|description=CAGE_peak_2_at_Aldh1b1_5end|id=chr4:45811888..45811928,+|ontology_enrichment_celltype=CL:0000117!8.01e-07!23;CL:0000337!8.01e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.45e-07,23;CL:0000337,1.45e-07,23;CL:0002563,2.13e-07,9;CL:0002251,2.13e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!6.23e-13!43;UBERON:0000344!4.92e-10!15;UBERON:0001242!8.72e-09!13;UBERON:0000060!8.72e-09!13;UBERON:0001262!8.72e-09!13;UBERON:0004786!8.72e-09!13;UBERON:0005409!1.97e-08!59;UBERON:0002020!7.36e-08!34|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.23e-18,31;UBERON:0000344,3.20e-11,15;UBERON:0001242,8.46e-10,13;UBERON:0001262,8.46e-10,13;UBERON:0004786,8.46e-10,13;UBERON:0005409,3.80e-09,47;UBERON:0002020,6.06e-08,34;UBERON:0003350,2.13e-07,9;UBERON:0004808,2.13e-07,9;UBERON:0001277,2.13e-07,9|phase1_expression=0.320297694209588,6.2815573375085,7.73498706962211,6.65421264875026,7.51343594919521,8.05820505177071,10.0453435456076,0.645616617207881,0,0,1.02730780935303,0.797721589953364,1.36960583944965,0.437102012094987,0.999329285446988,0.202475267389826,0,1.10411757875383,0.822686601634433,0.84877930359606,0.255129870453209,1.29078236561151,1.04479915655574,9.5995453676044,12.15869189656,5.7423196411502,9.04600191934057,8.40337807474967,19.3823887845501,16.8860186939154,10.8647950221099,0,0,0,14.731432607315,16.4572298904907,13.4751775133164,0,0,0,0.588231488031014,0,0,0.251793635951155,0,0.367093504323363,0,1.09012578190223,0.439372365468944,0.777719596297134,0.139986421625363,0,0.503347818173209,1.45072428402269,0.672187598284928,0.514518872071894,0.286533439938757,0,2.42779753031517,4.7609188134483,1.90149421051854,0.677689064138264,2.66788438833342,2.6996991518442,10.8775299882367,4.9733608046227,0.299600110518405,1.53687322128622,1.65903379693564,2.16009501330705,2.52389953621658,3.14216082844184,2.87129103237098,3.42974237801871,2.97120960156533,6.43453150627015,3.30347642998166,1.0214987046815,2.15049146558741,2.37395317914349,2.19570344645783,2.6045668527838,2.23346399201105,2.8138130501584,2.44477196442896,4.71405736757868,4.12877874317399,2.05039390407831,0.075726193333184,0.151143120213571,0.579728977403356,0.860423876981386,0,0.539703191637817,1.29955283489534,1.34408066129201,0.842666520790511,0,0,0,0.281686839553361,0,2.54805239706646,0,0.865964164044856,1.01343946190039,0,2.39786147410026,0.776813650941515,1.03909497345377,0.693941307064543,0.913396434936424,0.461230994512117,1.50722640552623,1.41106448562846,0.879666139307728,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0.969750506270444,5.59175283654366,0,0,8.68553987709211,0.958520996047362,1.79970819298022,1.39777249780371,1.49790639404823,1.83000241127451,6.40837195775608,0.869121600961382,1.79000820131231,1.24672826735736,2.92034273521964,0.101839363850316,0.124406970610093,0,0,0,0,0.360124259610698,0.150704817835715,0.204109497453984,0.2562274405697,0,0,0,0.189106080167819,0,0,0,0.348252166522167,0.205782136407943,1.19420560091096,1.40442637462647,1.02939162845886,1.42081749697796,5.17814431338755,4.69052119962192,5.40186184383045,6.39210786080068,5.90292695242211,6.01641740260775,8.13868806626427,9.65784245038629,7.12268588439734,5.59503489705834,3.94001913789829,2.43206428637567,1.31579988682799,1.3173006917463,1.74468344388483,2.10289948564127,2.16099685996497,2.31293148088659,11.1069237998689,0.426576501070468,0.232236671860439,4.38149368495117,11.4959609035305,16.4559752445204,11.9842144450912,12.3377556001573,10.0466362381647,6.28338022000674,7.36138946552258,4.67913809085888,8.98819408654222,7.3486936957396,8.76221602319216,0.189667900953082,0.456994050438915,0,0.407302655690628,0.387904974335251,0.420814919341911,0.252946148497029,0.295220295959204,0.31399745568275,0.123397163921801,0.296452627087149,0.333690211432188,0.589676985339609,0.449724224769707,1.01430060694251,1.4470629585145,1.2731292589071,2.01387296215567,1.13494658742525,2.74561413188081,0,2.23284568601102,2.80833905803104,0.505157755894224,1.25578189465339,3.37710464954357,0.369506380333209,0.947457058852424,0.488894929326078,0,0.234690248288502,0.335012514883631,0.714130922658041,0.195133647857799,0.315270288212382,0.221464689648775,0.318909537314974,0.163863314715738,0.345369963731791,0,1.50791283939272,4.89515115436839,0.491764273019036,0,1.28440471990234,1.17211686592203,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0.668396022247182,0.283076530788832,0.809621403349789,0.584511715822624,0.790575555893047,1.60660658210904,0.851640511249612,1.06839362200353,1.14020871547503,0.494910368917606,0,5.09839335925461,8.76738315197778,3.39489143560617,2.65771703592696,1.22974059177571,0.775284879504663,1.81766864738753,1.06949213515416,0.632073515871632,0,0,0.680879211507576,0,0,0,0,0.356737635204141,0.329098041204242,0,0.70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| ||
|EntrezGene=72535 | |||
|HGNC= | |||
|UniProt=Q9CZS1,B1AWX7 | |||
|association_with_transcript=0bp_to_ENSMUST00000044384,NM_028270,uc008ssx.1_5end | |||
|description=CAGE_peak_2_at_Aldh1b1_5end | |||
|id=chr4:45811888..45811928,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.01e-07!23;CL:0000337!8.01e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.45e-07,23;CL:0000337,1.45e-07,23;CL:0002563,2.13e-07,9;CL:0002251,2.13e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.23e-13!43;UBERON:0000344!4.92e-10!15;UBERON:0001242!8.72e-09!13;UBERON:0000060!8.72e-09!13;UBERON:0001262!8.72e-09!13;UBERON:0004786!8.72e-09!13;UBERON:0005409!1.97e-08!59;UBERON:0002020!7.36e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.23e-18,31;UBERON:0000344,3.20e-11,15;UBERON:0001242,8.46e-10,13;UBERON:0001262,8.46e-10,13;UBERON:0004786,8.46e-10,13;UBERON:0005409,3.80e-09,47;UBERON:0002020,6.06e-08,34;UBERON:0003350,2.13e-07,9;UBERON:0004808,2.13e-07,9;UBERON:0001277,2.13e-07,9 | |||
|phase1_expression=0.320297694209588,6.2815573375085,7.73498706962211,6.65421264875026,7.51343594919521,8.05820505177071,10.0453435456076,0.645616617207881,0,0,1.02730780935303,0.797721589953364,1.36960583944965,0.437102012094987,0.999329285446988,0.202475267389826,0,1.10411757875383,0.822686601634433,0.84877930359606,0.255129870453209,1.29078236561151,1.04479915655574,9.5995453676044,12.15869189656,5.7423196411502,9.04600191934057,8.40337807474967,19.3823887845501,16.8860186939154,10.8647950221099,0,0,0,14.731432607315,16.4572298904907,13.4751775133164,0,0,0,0.588231488031014,0,0,0.251793635951155,0,0.367093504323363,0,1.09012578190223,0.439372365468944,0.777719596297134,0.139986421625363,0,0.503347818173209,1.45072428402269,0.672187598284928,0.514518872071894,0.286533439938757,0,2.42779753031517,4.7609188134483,1.90149421051854,0.677689064138264,2.66788438833342,2.6996991518442,10.8775299882367,4.9733608046227,0.299600110518405,1.53687322128622,1.65903379693564,2.16009501330705,2.52389953621658,3.14216082844184,2.87129103237098,3.42974237801871,2.97120960156533,6.43453150627015,3.30347642998166,1.0214987046815,2.15049146558741,2.37395317914349,2.19570344645783,2.6045668527838,2.23346399201105,2.8138130501584,2.44477196442896,4.71405736757868,4.12877874317399,2.05039390407831,0.075726193333184,0.151143120213571,0.579728977403356,0.860423876981386,0,0.539703191637817,1.29955283489534,1.34408066129201,0.842666520790511,0,0,0,0.281686839553361,0,2.54805239706646,0,0.865964164044856,1.01343946190039,0,2.39786147410026,0.776813650941515,1.03909497345377,0.693941307064543,0.913396434936424,0.461230994512117,1.50722640552623,1.41106448562846,0.879666139307728,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0.969750506270444,5.59175283654366,0,0,8.68553987709211,0.958520996047362,1.79970819298022,1.39777249780371,1.49790639404823,1.83000241127451,6.40837195775608,0.869121600961382,1.79000820131231,1.24672826735736,2.92034273521964,0.101839363850316,0.124406970610093,0,0,0,0,0.360124259610698,0.150704817835715,0.204109497453984,0.2562274405697,0,0,0,0.189106080167819,0,0,0,0.348252166522167,0.205782136407943,1.19420560091096,1.40442637462647,1.02939162845886,1.42081749697796,5.17814431338755,4.69052119962192,5.40186184383045,6.39210786080068,5.90292695242211,6.01641740260775,8.13868806626427,9.65784245038629,7.12268588439734,5.59503489705834,3.94001913789829,2.43206428637567,1.31579988682799,1.3173006917463,1.74468344388483,2.10289948564127,2.16099685996497,2.31293148088659,11.1069237998689,0.426576501070468,0.232236671860439,4.38149368495117,11.4959609035305,16.4559752445204,11.9842144450912,12.3377556001573,10.0466362381647,6.28338022000674,7.36138946552258,4.67913809085888,8.98819408654222,7.3486936957396,8.76221602319216,0.189667900953082,0.456994050438915,0,0.407302655690628,0.387904974335251,0.420814919341911,0.252946148497029,0.295220295959204,0.31399745568275,0.123397163921801,0.296452627087149,0.333690211432188,0.589676985339609,0.449724224769707,1.01430060694251,1.4470629585145,1.2731292589071,2.01387296215567,1.13494658742525,2.74561413188081,0,2.23284568601102,2.80833905803104,0.505157755894224,1.25578189465339,3.37710464954357,0.369506380333209,0.947457058852424,0.488894929326078,0,0.234690248288502,0.335012514883631,0.714130922658041,0.195133647857799,0.315270288212382,0.221464689648775,0.318909537314974,0.163863314715738,0.345369963731791,0,1.50791283939272,4.89515115436839,0.491764273019036,0,1.28440471990234,1.17211686592203,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0.668396022247182,0.283076530788832,0.809621403349789,0.584511715822624,0.790575555893047,1.60660658210904,0.851640511249612,1.06839362200353,1.14020871547503,0.494910368917606,0,5.09839335925461,8.76738315197778,3.39489143560617,2.65771703592696,1.22974059177571,0.775284879504663,1.81766864738753,1.06949213515416,0.632073515871632,0,0,0.680879211507576,0,0,0,0,0.356737635204141,0.329098041204242,0,0.704015124191131,0.21183207086382,0,0.16488625294148,0,0.241251699712623,0,0.492422699235184,12.2421951384537,1.48340241608408,0.341741761595705,0.412773735926445,0.370389054739423,0.376736914009382,0.683471138605126,0.686334519619568,1.86976272993241,0.979660166265606,1.38199973804424,0.954670618015114,0.632671987162271,1.21991680276109,1.62008011232702,0.209088296014469,1.09181281873089,0.404593039154462,0.578574190077352,0,6.09190374471426,0.621339313086926,0.56369293868419,4.03694674318743,3.47462829959905,1.75006069509643,3.09983576346555,3.04121025883401,1.40828686374905,2.21347454234715,0.943734099831398,1.69108884578204,0.288030006257865,1.89606672376907,1.01362607645082,1.02710957164827,1.81889152168913,1.43221356533985,1.98681354781265,1.9231271923195,1.77227432609493,2.62512769865184,3.12447907285499,1.81487133246313,1.26695244961678,1.92423683280659,3.27255326108393,0.453460767230423,0,0.358855426437903,0.335769232728157,0.386379188064381,2.43987218086537,0.183151624267265,0.42873675815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| |||
|short_description=p2@Aldh1b1 | |||
}} | |||
Revision as of 05:05, 14 September 2013
| Short description: | p2@Aldh1b1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Aldh1b1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000044384, NM_028270, uc008ssx.1_5end |
| EntrezGene: | Aldh1b1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.45e-07 | 23 |
| neuroblast (sensu Vertebrata) | 1.45e-07 | 23 |
| intestinal epithelial cell | 2.13e-07 | 9 |
| epithelial cell of alimentary canal | 2.13e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 6.23e-18 | 31 |
| mucosa | 3.20e-11 | 15 |
| intestinal mucosa | 8.46e-10 | 13 |
| wall of intestine | 8.46e-10 | 13 |
| gastrointestinal system mucosa | 8.46e-10 | 13 |
| gastrointestinal system | 3.80e-09 | 47 |
| gray matter | 6.06e-08 | 34 |
| epithelium of mucosa | 2.13e-07 | 9 |
| gastrointestinal system epithelium | 2.13e-07 | 9 |
| intestinal epithelium | 2.13e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
