FFCP PHASE1:Mm9::chr4:4004657..4004687,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=242286|HGNC=|MCL_coexpression_id=65|UniProt=Q05A13|association_with_transcript=0bp_to_ENSMUST00000108383,NM_001080710,uc008rwy.1_5end|description=CAGE_peak_1_at_Sdr16c6_5end|id=chr4:4004657..4004687,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000014!3.43e-07!5;UBERON:0001003!3.43e-07!5;UBERON:0002097!3.43e-07!5;UBERON:0002199!3.43e-07!5;UBERON:0007029!3.43e-07!5;UBERON:0007376!3.43e-07!5;UBERON:0002416!3.43e-07!5;UBERON:0007383!3.43e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.41e-12,22;UBERON:0000014,2.32e-12,5;UBERON:0001003,2.32e-12,5;UBERON:0002097,2.32e-12,5;UBERON:0002199,2.32e-12,5;UBERON:0007029,2.32e-12,5;UBERON:0007376,2.32e-12,5;UBERON:0002416,2.32e-12,5;UBERON:0007383,2.32e-12,5;UBERON:0002102,1.67e-07,7;UBERON:0004710,1.67e-07,7;UBERON:0005419,1.67e-07,7;UBERON:0005417,1.67e-07,7;UBERON:0005729,1.67e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.65155492342555,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0,9.89076722666428,0,0,1.26043490863744,4.21973489940002,0.476255494059295,0,0.0937017245597288,7.50239775143145,0,0,1.05570674498369,5.47989331068937,31.9754336609438,52.9343293113693,61.5288587859751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0.128867461322093,0,0,0.380451252225118,0,0,0.502670417600539,0.198956472041151,0.38992817423824,0,0.216138049874694,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0.157635144106191,0,0,1.14704320301017,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,81.9484677119156,74.1121718534206,94.3294145876358,179.177888348708,115.226911621033,0,0,0,0,0,0,0,0,0,0,0,10.5013767981662,0,0,0.972048067396211,13.1725626489115,17.6873676634404,14.4304850631758,11.571483801547,11.5172614472973,0.648074866458964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0.205421914329655,0,0,0.79472541912506,0.240390899039938,0,0.100966449948148,0.0762068066549998,0.403304740547362,0.38983152295901,0.384847366561318,0.116876902181569,71.4200708387916,0,0,0,0.579568782096571,0.187682475451182,0.73260649706906,18.8644173589578,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,14.8295097411659,1.46729213839588,3.30918315210025,1.11123363900808,0.824140228955577,0.64183841918363,1.26348605881899,1.2673964994512,0.943131706930381,1.49826411951812,0.89635213366817,0.689225627467359,1.42888107384922,0.347652977834566,1.35036454324594,1.64834360321323,1.03039244094078,2.40008476669791,0.887379030796687,0.715308569841963,0.581385666529314,0.846984423737976,0.761531471025089,0.914639864363863,0.263069711437843,0.950628796921032,0,1.30498519936592,0.985044823755635,0.409231043169689,0.77468420592983,14.8538090455479,12.2407183189594,18.0127338502964,21.2722343507815,11.4772999241306,20.956184816354,1.85494268496337|short_description=p1@Sdr16c6}} | ||
|EntrezGene=242286 | |||
|HGNC= | |||
|MCL_coexpression_id=65 | |||
|UniProt=Q05A13 | |||
|association_with_transcript=0bp_to_ENSMUST00000108383,NM_001080710,uc008rwy.1_5end | |||
|description=CAGE_peak_1_at_Sdr16c6_5end | |||
|id=chr4:4004657..4004687,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000014!3.43e-07!5;UBERON:0001003!3.43e-07!5;UBERON:0002097!3.43e-07!5;UBERON:0002199!3.43e-07!5;UBERON:0007029!3.43e-07!5;UBERON:0007376!3.43e-07!5;UBERON:0002416!3.43e-07!5;UBERON:0007383!3.43e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.41e-12,22;UBERON:0000014,2.32e-12,5;UBERON:0001003,2.32e-12,5;UBERON:0002097,2.32e-12,5;UBERON:0002199,2.32e-12,5;UBERON:0007029,2.32e-12,5;UBERON:0007376,2.32e-12,5;UBERON:0002416,2.32e-12,5;UBERON:0007383,2.32e-12,5;UBERON:0002102,1.67e-07,7;UBERON:0004710,1.67e-07,7;UBERON:0005419,1.67e-07,7;UBERON:0005417,1.67e-07,7;UBERON:0005729,1.67e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.65155492342555,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0,9.89076722666428,0,0,1.26043490863744,4.21973489940002,0.476255494059295,0,0.0937017245597288,7.50239775143145,0,0,1.05570674498369,5.47989331068937,31.9754336609438,52.9343293113693,61.5288587859751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0.128867461322093,0,0,0.380451252225118,0,0,0.502670417600539,0.198956472041151,0.38992817423824,0,0.216138049874694,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0.157635144106191,0,0,1.14704320301017,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,81.9484677119156,74.1121718534206,94.3294145876358,179.177888348708,115.226911621033,0,0,0,0,0,0,0,0,0,0,0,10.5013767981662,0,0,0.972048067396211,13.1725626489115,17.6873676634404,14.4304850631758,11.571483801547,11.5172614472973,0.648074866458964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0.205421914329655,0,0,0.79472541912506,0.240390899039938,0,0.100966449948148,0.0762068066549998,0.403304740547362,0.38983152295901,0.384847366561318,0.116876902181569,71.4200708387916,0,0,0,0.579568782096571,0.187682475451182,0.73260649706906,18.8644173589578,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,14.8295097411659,1.46729213839588,3.30918315210025,1.11123363900808,0.824140228955577,0.64183841918363,1.26348605881899,1.2673964994512,0.943131706930381,1.49826411951812,0.89635213366817,0.689225627467359,1.42888107384922,0.347652977834566,1.35036454324594,1.64834360321323,1.03039244094078,2.40008476669791,0.887379030796687,0.715308569841963,0.581385666529314,0.846984423737976,0.761531471025089,0.914639864363863,0.263069711437843,0.950628796921032,0,1.30498519936592,0.985044823755635,0.409231043169689,0.77468420592983,14.8538090455479,12.2407183189594,18.0127338502964,21.2722343507815,11.4772999241306,20.956184816354,1.85494268496337 | |||
|short_description=p1@Sdr16c6 | |||
}} |
Revision as of 04:54, 14 September 2013
Short description: | p1@Sdr16c6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sdr16c6_5end |
Coexpression cluster: | MCL_coexpression_mm9:65 |
Association with transcript: | 0bp_to_ENSMUST00000108383, NM_001080710, uc008rwy.1_5end |
EntrezGene: | Sdr16c6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
surface structure | 1.41e-12 | 22 |
zone of skin | 2.32e-12 | 5 |
skin epidermis | 2.32e-12 | 5 |
skin of body | 2.32e-12 | 5 |
integument | 2.32e-12 | 5 |
surface | 2.32e-12 | 5 |
outer epithelium | 2.32e-12 | 5 |
integumental system | 2.32e-12 | 5 |
enveloping layer of ectoderm | 2.32e-12 | 5 |
forelimb | 1.67e-07 | 7 |
pectoral appendage | 1.67e-07 | 7 |
pectoral appendage bud | 1.67e-07 | 7 |
forelimb bud | 1.67e-07 | 7 |
forelimb/pectoral fin field | 1.67e-07 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.