FFCP PHASE1:Mm9::chr3:95350717..95350726,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=67|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:95350717..95350726,+|id=chr3:95350717..95350726,+|ontology_enrichment_celltype=CL:0002092!2.26e-11!3;CL:0002540!2.26e-11!3;CL:0002031!2.55e-11!25;CL:0002320!2.83e-11!46;CL:0000134!2.83e-11!46;CL:0000988!3.50e-10!32;CL:0002032!3.50e-10!32;CL:0000037!3.50e-10!32;CL:0000566!3.50e-10!32;CL:0000837!3.50e-10!32;CL:0000063!1.62e-09!66;CL:0000219!3.44e-09!54;CL:0000738!7.84e-09!17;CL:0002087!7.84e-09!17;CL:0000624!9.95e-07!8|ontology_enrichment_celltype_v019_2=CL:0002476,1.66e-44,2;CL:0002092,1.54e-29,3;CL:0002540,1.54e-29,3;CL:0002194,6.55e-23,4;CL:0000766,6.55e-23,4;CL:0000234,6.55e-23,4;CL:0000576,6.55e-23,4;CL:0000235,6.55e-23,4;CL:0000864,6.55e-23,4;CL:0002009,6.55e-23,4;CL:0000040,6.55e-23,4;CL:0000559,6.55e-23,4;CL:0000473,1.34e-13,7;CL:0000557,1.34e-13,7;CL:0002320,2.15e-08,46;CL:0000134,2.15e-08,46;CL:0000839,8.31e-08,13;CL:0000219,2.91e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.96e-12!16;UBERON:0002384!2.83e-11!46;UBERON:0000331!1.39e-10!3;UBERON:0002116!1.39e-10!3;UBERON:0001204!1.39e-10!3;UBERON:0001168!1.39e-10!3;UBERON:0002193!4.76e-09!48;UBERON:0001474!1.07e-08!22;UBERON:0004765!1.07e-08!22;UBERON:0001434!1.07e-08!22;UBERON:0002390!2.59e-08!45;UBERON:0003061!2.59e-08!45;UBERON:0004923!2.06e-07!24;UBERON:0000344!3.20e-07!15|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.70e-22,16;UBERON:0001474,1.26e-16,22;UBERON:0004765,1.26e-16,22;UBERON:0001434,1.26e-16,22;UBERON:0002204,1.03e-11,32;UBERON:0002390,1.45e-08,45;UBERON:0003061,1.45e-08,45;UBERON:0002384,2.15e-08,46;UBERON:0002193,4.46e-08,48;UBERON:0002405,4.46e-08,48|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.258246646883153,0.140788722151667,0,0,0,0,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0,0,0.159992422793407,0,0,0,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,0,0,0,0,0,0,0,0,0,0.899899717281399,2.96659908770092,1.4209602298922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,28.6503439484617,4.35124547054968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136694227721025,0.457556346413045,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:95350717..95350726,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=67 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:95350717..95350726,+ | |||
|id=chr3:95350717..95350726,+ | |||
|ontology_enrichment_celltype=CL:0002092!2.26e-11!3;CL:0002540!2.26e-11!3;CL:0002031!2.55e-11!25;CL:0002320!2.83e-11!46;CL:0000134!2.83e-11!46;CL:0000988!3.50e-10!32;CL:0002032!3.50e-10!32;CL:0000037!3.50e-10!32;CL:0000566!3.50e-10!32;CL:0000837!3.50e-10!32;CL:0000063!1.62e-09!66;CL:0000219!3.44e-09!54;CL:0000738!7.84e-09!17;CL:0002087!7.84e-09!17;CL:0000624!9.95e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002476,1.66e-44,2;CL:0002092,1.54e-29,3;CL:0002540,1.54e-29,3;CL:0002194,6.55e-23,4;CL:0000766,6.55e-23,4;CL:0000234,6.55e-23,4;CL:0000576,6.55e-23,4;CL:0000235,6.55e-23,4;CL:0000864,6.55e-23,4;CL:0002009,6.55e-23,4;CL:0000040,6.55e-23,4;CL:0000559,6.55e-23,4;CL:0000473,1.34e-13,7;CL:0000557,1.34e-13,7;CL:0002320,2.15e-08,46;CL:0000134,2.15e-08,46;CL:0000839,8.31e-08,13;CL:0000219,2.91e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.96e-12!16;UBERON:0002384!2.83e-11!46;UBERON:0000331!1.39e-10!3;UBERON:0002116!1.39e-10!3;UBERON:0001204!1.39e-10!3;UBERON:0001168!1.39e-10!3;UBERON:0002193!4.76e-09!48;UBERON:0001474!1.07e-08!22;UBERON:0004765!1.07e-08!22;UBERON:0001434!1.07e-08!22;UBERON:0002390!2.59e-08!45;UBERON:0003061!2.59e-08!45;UBERON:0004923!2.06e-07!24;UBERON:0000344!3.20e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.70e-22,16;UBERON:0001474,1.26e-16,22;UBERON:0004765,1.26e-16,22;UBERON:0001434,1.26e-16,22;UBERON:0002204,1.03e-11,32;UBERON:0002390,1.45e-08,45;UBERON:0003061,1.45e-08,45;UBERON:0002384,2.15e-08,46;UBERON:0002193,4.46e-08,48;UBERON:0002405,4.46e-08,48 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.258246646883153,0.140788722151667,0,0,0,0,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0,0,0.159992422793407,0,0,0,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,0,0,0,0,0,0,0,0,0,0.899899717281399,2.96659908770092,1.4209602298922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,28.6503439484617,4.35124547054968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136694227721025,0.457556346413045,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:95350717..95350726,+ | |||
}} |
Revision as of 03:05, 14 September 2013
Short description: | p@chr3:95350717..95350726, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:95350717..95350726, + |
Coexpression cluster: | MCL_coexpression_mm9:67 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow macrophage | 1.66e-44 | 2 |
bone marrow cell | 1.54e-29 | 3 |
mesenchymal stem cell of the bone marrow | 1.54e-29 | 3 |
monopoietic cell | 6.55e-23 | 4 |
myeloid leukocyte | 6.55e-23 | 4 |
phagocyte | 6.55e-23 | 4 |
monocyte | 6.55e-23 | 4 |
macrophage | 6.55e-23 | 4 |
tissue-resident macrophage | 6.55e-23 | 4 |
macrophage dendritic cell progenitor | 6.55e-23 | 4 |
monoblast | 6.55e-23 | 4 |
promonocyte | 6.55e-23 | 4 |
defensive cell | 1.34e-13 | 7 |
granulocyte monocyte progenitor cell | 1.34e-13 | 7 |
connective tissue cell | 2.15e-08 | 46 |
mesenchymal cell | 2.15e-08 | 46 |
myeloid lineage restricted progenitor cell | 8.31e-08 | 13 |
motile cell | 2.91e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.70e-22 | 16 |
bone element | 1.26e-16 | 22 |
skeletal element | 1.26e-16 | 22 |
skeletal system | 1.26e-16 | 22 |
musculoskeletal system | 1.03e-11 | 32 |
hematopoietic system | 1.45e-08 | 45 |
blood island | 1.45e-08 | 45 |
connective tissue | 2.15e-08 | 46 |
hemolymphoid system | 4.46e-08 | 48 |
immune system | 4.46e-08 | 48 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.