FFCP PHASE1:Mm9::chr3:88755012..88755037,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=65111|HGNC=|MCL_coexpression_id=58|UniProt=G3UWJ4|association_with_transcript=0bp_to_ENSMUST00000172790,ENSMUST00000173021_5end|description=CAGE_peak_8_at_Dap3_5end|id=chr3:88755012..88755037,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,2.13e-09,25;CL:0000223,3.11e-08,20;CL:0002563,5.59e-07,9;CL:0002251,5.59e-07,9;CL:0000239,7.85e-07,6;CL:0000677,7.85e-07,6;CL:0000584,7.85e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003914!1.64e-09!47;UBERON:0002365!2.84e-09!25;UBERON:0002330!2.84e-09!25;UBERON:0002107!9.58e-09!22;UBERON:0007499!9.58e-09!22;UBERON:0006925!9.58e-09!22;UBERON:0009497!9.58e-09!22;UBERON:0000015!9.58e-09!22;UBERON:0002423!9.58e-09!22;UBERON:0006235!9.58e-09!22;UBERON:0008835!9.58e-09!22;UBERON:0003894!9.58e-09!22;UBERON:0004161!9.58e-09!22;UBERON:0008836!9.58e-09!22;UBERON:0009569!2.28e-08!66;UBERON:0005172!2.32e-08!49;UBERON:0005173!2.32e-08!49;UBERON:0002417!2.32e-08!49;UBERON:0000916!2.32e-08!49;UBERON:0009854!1.04e-07!23;UBERON:0009856!1.04e-07!23;UBERON:0000344!1.55e-07!15;UBERON:0005256!2.04e-07!47;UBERON:0001007!3.13e-07!128;UBERON:0001555!3.13e-07!128;UBERON:0007026!3.13e-07!128;UBERON:0000466!4.49e-07!79;UBERON:0004119!4.51e-07!130;UBERON:0000925!4.51e-07!130;UBERON:0006595!4.51e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0002365,5.78e-12,25;UBERON:0002330,5.78e-12,25;UBERON:0002107,7.24e-12,22;UBERON:0007499,7.24e-12,22;UBERON:0006925,7.24e-12,22;UBERON:0009497,7.24e-12,22;UBERON:0000015,7.24e-12,22;UBERON:0002423,7.24e-12,22;UBERON:0006235,7.24e-12,22;UBERON:0008835,7.24e-12,22;UBERON:0003894,7.24e-12,22;UBERON:0004161,7.24e-12,22;UBERON:0008836,7.24e-12,22;UBERON:0009854,4.84e-11,23;UBERON:0009856,4.84e-11,23;UBERON:0005256,1.99e-10,45;UBERON:0000344,9.68e-10,15;UBERON:0003929,5.38e-09,55;UBERON:0003914,5.50e-09,47;UBERON:0005911,4.82e-08,69;UBERON:0001242,6.00e-08,13;UBERON:0001262,6.00e-08,13;UBERON:0004786,6.00e-08,13;UBERON:0005172,7.29e-08,49;UBERON:0005173,7.29e-08,49;UBERON:0002417,7.29e-08,49;UBERON:0000916,7.29e-08,49;UBERON:0002530,1.40e-07,65;UBERON:0001007,3.23e-07,116;UBERON:0001555,3.23e-07,116;UBERON:0007026,3.23e-07,116;UBERON:0000490,5.10e-07,66;UBERON:0003350,5.59e-07,9;UBERON:0004808,5.59e-07,9;UBERON:0001277,5.59e-07,9;UBERON:0002368,5.99e-07,60;UBERON:0003104,6.11e-07,61;UBERON:0009142,6.11e-07,61;UBERON:0004119,7.64e-07,118;UBERON:0000925,7.64e-07,118;UBERON:0006595,7.64e-07,118|phase1_expression=0,14.3079917132138,11.3749809847384,2.11724947914781,2.50447864973174,6.21153306073992,4.90586545250604,0.774739940649458,2.25261955442667,2.10658073689794,0.171217968225505,0.478632953972018,0.342401459862411,0,0.333109761815663,0.607425802169478,0,0.157731082679119,0.274228867211478,0,1.27564935226605,0.198581902401771,0.261199789138935,5.43974237497583,5.96464130774642,5.7423196411502,9.47676391549965,9.69620547086501,2.09025761402011,1.51218077855958,3.54768817048488,1.27006134691926,0.61506478758457,0,3.75507105676657,0.831173226792462,1.63335485009895,0.418531630736908,0,0,0.588231488031014,0,0.485510353031154,0.503587271902309,0.405507724878058,0.550640256485045,0,0.65407546914134,1.09843091367236,0.58328969722285,0,0,0,0.725362142011344,0,1.28629718017973,0.85960031981627,2.06268836910977,0,0,0,0,0,0,0,0.7104801149461,0.898800331555214,0.384218305321555,0.207379224616955,0.135005938331691,0,0.285650984403804,0.441737081903227,0,0.287536413054709,0,0,0,0,0.131886287730194,0,0,0,0,0.30559649555362,0,0.284743361598206,0,0.37863096666592,0.68014404096107,2.89864488701678,0.860423876981386,1.3599426674155,0,5.19821133958135,3.13618820968135,0.421333260395256,0.340860645156116,0.779358013808606,0.35333957451034,0.14084341977668,2.56652954828636,0,7.11066703153331,0.432982082022428,1.01343946190039,0.505524445014783,1.1418387971906,2.33044095282455,1.33597925158342,0.867426633830679,2.13125834818499,2.30615497256059,1.95939432718409,1.99900802130698,1.50799909595611,0.247194967734374,0.86759614151947,0.884610551949874,0.970601099684455,1.32504911076236,1.93950101254089,0,0.292780797011547,0.628340120440365,2.55457055208591,0.838705871541442,1.19980546198682,0.762421362438388,0.299581278809645,0.457500602818626,0.628271760564322,0.173824320192276,0.255715457330331,0.20778804455956,0.162241263067758,0.611036183101898,1.7416975885413,1.26361379216837,0.210441855886474,0.260240885925407,0.229902104433473,1.26043490863744,0.90422890701429,0.748401490664606,0.512454881139399,0.562210347358373,1.29351685369508,0,0.567318240503458,0,0.657587197282725,0.278047249225598,0.348252166522167,1.4404749548556,0.796137067273973,0,1.02939162845886,0,0.621377317606506,0,0.900310307305074,1.42046841351126,0.983821158737019,0.925602677324269,1.39520366850245,0.536546802799238,1.28441876603886,0.987359099480883,0.820837320395476,1.37816976227955,1.31579988682799,2.85415149878366,1.61047702512446,0,0.411618449517138,0.330418782983798,1.58670339998127,0,1.16118335930219,0.77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| ||
|EntrezGene=65111 | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=G3UWJ4 | |||
|association_with_transcript=0bp_to_ENSMUST00000172790,ENSMUST00000173021_5end | |||
|description=CAGE_peak_8_at_Dap3_5end | |||
|id=chr3:88755012..88755037,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.13e-09,25;CL:0000223,3.11e-08,20;CL:0002563,5.59e-07,9;CL:0002251,5.59e-07,9;CL:0000239,7.85e-07,6;CL:0000677,7.85e-07,6;CL:0000584,7.85e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.64e-09!47;UBERON:0002365!2.84e-09!25;UBERON:0002330!2.84e-09!25;UBERON:0002107!9.58e-09!22;UBERON:0007499!9.58e-09!22;UBERON:0006925!9.58e-09!22;UBERON:0009497!9.58e-09!22;UBERON:0000015!9.58e-09!22;UBERON:0002423!9.58e-09!22;UBERON:0006235!9.58e-09!22;UBERON:0008835!9.58e-09!22;UBERON:0003894!9.58e-09!22;UBERON:0004161!9.58e-09!22;UBERON:0008836!9.58e-09!22;UBERON:0009569!2.28e-08!66;UBERON:0005172!2.32e-08!49;UBERON:0005173!2.32e-08!49;UBERON:0002417!2.32e-08!49;UBERON:0000916!2.32e-08!49;UBERON:0009854!1.04e-07!23;UBERON:0009856!1.04e-07!23;UBERON:0000344!1.55e-07!15;UBERON:0005256!2.04e-07!47;UBERON:0001007!3.13e-07!128;UBERON:0001555!3.13e-07!128;UBERON:0007026!3.13e-07!128;UBERON:0000466!4.49e-07!79;UBERON:0004119!4.51e-07!130;UBERON:0000925!4.51e-07!130;UBERON:0006595!4.51e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002365,5.78e-12,25;UBERON:0002330,5.78e-12,25;UBERON:0002107,7.24e-12,22;UBERON:0007499,7.24e-12,22;UBERON:0006925,7.24e-12,22;UBERON:0009497,7.24e-12,22;UBERON:0000015,7.24e-12,22;UBERON:0002423,7.24e-12,22;UBERON:0006235,7.24e-12,22;UBERON:0008835,7.24e-12,22;UBERON:0003894,7.24e-12,22;UBERON:0004161,7.24e-12,22;UBERON:0008836,7.24e-12,22;UBERON:0009854,4.84e-11,23;UBERON:0009856,4.84e-11,23;UBERON:0005256,1.99e-10,45;UBERON:0000344,9.68e-10,15;UBERON:0003929,5.38e-09,55;UBERON:0003914,5.50e-09,47;UBERON:0005911,4.82e-08,69;UBERON:0001242,6.00e-08,13;UBERON:0001262,6.00e-08,13;UBERON:0004786,6.00e-08,13;UBERON:0005172,7.29e-08,49;UBERON:0005173,7.29e-08,49;UBERON:0002417,7.29e-08,49;UBERON:0000916,7.29e-08,49;UBERON:0002530,1.40e-07,65;UBERON:0001007,3.23e-07,116;UBERON:0001555,3.23e-07,116;UBERON:0007026,3.23e-07,116;UBERON:0000490,5.10e-07,66;UBERON:0003350,5.59e-07,9;UBERON:0004808,5.59e-07,9;UBERON:0001277,5.59e-07,9;UBERON:0002368,5.99e-07,60;UBERON:0003104,6.11e-07,61;UBERON:0009142,6.11e-07,61;UBERON:0004119,7.64e-07,118;UBERON:0000925,7.64e-07,118;UBERON:0006595,7.64e-07,118 | |||
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| |||
|short_description=p8@Dap3 | |||
}} | |||
Revision as of 02:48, 14 September 2013
| Short description: | p8@Dap3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_8_at_Dap3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:58 |
| Association with transcript: | 0bp_to_ENSMUST00000172790, ENSMUST00000173021_5end |
| EntrezGene: | Dap3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 2.13e-09 | 25 |
| endodermal cell | 3.11e-08 | 20 |
| intestinal epithelial cell | 5.59e-07 | 9 |
| epithelial cell of alimentary canal | 5.59e-07 | 9 |
| brush border epithelial cell | 7.85e-07 | 6 |
| gut absorptive cell | 7.85e-07 | 6 |
| enterocyte | 7.85e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
