FFCP PHASE1:Mm9::chr2:174162242..174162265,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=989|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:174162242..174162265,+|id=chr2:174162242..174162265,+|ontology_enrichment_celltype=CL:0000055!1.89e-10!50;CL:0000117!2.46e-10!23;CL:0000337!2.46e-10!23;CL:0002319!3.00e-10!43;CL:0000221!8.34e-10!44;CL:0000133!8.34e-10!44;CL:0000393!2.30e-08!39;CL:0000211!2.30e-08!39;CL:0000540!4.04e-08!33;CL:0000047!4.04e-08!33;CL:0000031!4.04e-08!33;CL:0000404!4.04e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.66e-12,23;CL:0000337,3.66e-12,23;CL:0002319,5.87e-10,43;CL:0000221,1.82e-09,44;CL:0000133,1.82e-09,44;CL:0000540,4.36e-07,33;CL:0000047,4.36e-07,33;CL:0000031,4.36e-07,33;CL:0000404,4.36e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.82e-21!73;UBERON:0005743!1.82e-21!73;UBERON:0000073!4.40e-20!75;UBERON:0001016!4.40e-20!75;UBERON:0002346!1.41e-19!71;UBERON:0003075!1.41e-19!71;UBERON:0007284!1.41e-19!71;UBERON:0001049!1.93e-18!52;UBERON:0005068!1.93e-18!52;UBERON:0006241!1.93e-18!52;UBERON:0007135!1.93e-18!52;UBERON:0004121!6.18e-18!102;UBERON:0000924!6.18e-18!102;UBERON:0006601!6.18e-18!102;UBERON:0002616!1.19e-16!49;UBERON:0000955!2.71e-16!50;UBERON:0006238!2.71e-16!50;UBERON:0003080!2.76e-14!40;UBERON:0002780!4.92e-14!39;UBERON:0001890!4.92e-14!39;UBERON:0006240!4.92e-14!39;UBERON:0003056!2.28e-13!49;UBERON:0000033!2.33e-13!63;UBERON:0002020!2.38e-12!34;UBERON:0002791!9.11e-10!29;UBERON:0003528!9.11e-10!29;UBERON:0001893!9.11e-10!29;UBERON:0000025!1.39e-09!114;UBERON:0000956!1.75e-07!21;UBERON:0001869!1.75e-07!21;UBERON:0000203!1.75e-07!21;UBERON:0004111!3.45e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.37e-21,54;UBERON:0001017,8.47e-21,73;UBERON:0001049,4.50e-20,52;UBERON:0005068,4.50e-20,52;UBERON:0006241,4.50e-20,52;UBERON:0007135,4.50e-20,52;UBERON:0001016,1.27e-19,75;UBERON:0002346,1.34e-16,64;UBERON:0003075,1.34e-16,64;UBERON:0007284,1.34e-16,64;UBERON:0003080,4.58e-16,40;UBERON:0002616,7.08e-16,46;UBERON:0002780,9.66e-16,39;UBERON:0001890,9.66e-16,39;UBERON:0006240,9.66e-16,39;UBERON:0010314,2.38e-15,92;UBERON:0000955,3.33e-15,47;UBERON:0006238,3.33e-15,47;UBERON:0004121,1.60e-14,95;UBERON:0000924,1.60e-14,95;UBERON:0006601,1.60e-14,95;UBERON:0002020,6.16e-14,34;UBERON:0003056,1.37e-13,49;UBERON:0010371,6.45e-13,73;UBERON:0003528,1.01e-10,29;UBERON:0002791,1.01e-10,29;UBERON:0001893,1.01e-10,29;UBERON:0000025,5.28e-09,114;UBERON:0000956,1.72e-08,21;UBERON:0001869,1.72e-08,21;UBERON:0000203,1.72e-08,21;UBERON:0004111,3.88e-07,122;UBERON:0002619,5.70e-07,17;UBERON:0000007,8.91e-07,8;UBERON:0003296,8.91e-07,8;UBERON:0010133,8.91e-07,8|phase1_expression=0.480446541314382,1.04692622291808,0,0.60492842261366,0,0.16787927191189,0.233612640595526,0.129123323441576,0.140788722151667,0.234064526321993,0,0.478632953972018,0,0,0,0.607425802169478,0,0.157731082679119,0.274228867211478,0.42438965179803,0.595303031057488,0.0992909512008853,0.261199789138935,0.639969691173627,0.22940928106717,0.57423196411502,0,0.430942465371778,0.380046838912748,0.252030129759931,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0.683045484958446,0,1.51076181570693,0.811015449756117,0.917733760808408,2.34717403304412,1.52617609466313,2.85592037554813,8.1660557611199,3.07970127575798,1.43752564364972,0,1.45072428402269,0,2.57259436035947,1.43266719969378,0.515672092277442,2.02316460859598,4.7609188134483,3.80298842103708,2.03306719241479,3.55717918444456,0.899899717281399,3.9554654502679,0.7104801149461,3.59520132622086,5.37905627450176,1.24427534770173,3.64516033495565,1.89292465216244,4.85606673486466,3.09215957332259,0.734944795289724,2.20444583341944,1.83843757322004,2.20231761998777,3.95830748064082,4.91540906419979,1.71452174049252,4.94033275453012,0.52091337055676,7.53794097303729,7.31591393041184,5.04234217663473,2.94628585473668,4.55589378557129,2.23679334990361,0.227178579999552,0.302286240427142,0.579728977403356,0.860423876981386,0.679971333707751,0.539703191637817,0.649776417447669,0,0.561777680527007,4.26075806445144,2.85764605063156,4.24007489412408,0.422530259330042,2.56652954828636,0,0,1.5154372870785,0.760079596425296,1.51657333504435,0.5709193985953,0.776813650941515,1.33597925158342,1.90833859442749,2.74018930480927,2.7673859670727,2.56228488939458,1.52865319276416,0.628332956648377,1.23597483867187,1.01219549843938,0,1.45590164952668,0.220841518460394,0.484875253135222,0,0.878342391034642,1.04723353406728,1.02182822083437,0.359445373517761,0,0.127070227073065,1.64769703345305,1.83000241127451,0.879580464790051,1.73824320192276,1.27857728665165,2.49345653471472,0.648965052271031,1.83310854930569,0.373220911830279,0.758168275301024,0.210441855886474,0.910843100738926,1.83921683546778,0.900310649026746,1.65775299619287,1.15662048557257,0.640568601424249,0.749613796477831,1.03481348295606,1.72454394346274,1.89106080167819,1.75951124163949,1.09597866213787,1.11218899690239,1.74126083261083,1.23469281844766,0.398068533636986,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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=989 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:174162242..174162265,+ | |||
|id=chr2:174162242..174162265,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.89e-10!50;CL:0000117!2.46e-10!23;CL:0000337!2.46e-10!23;CL:0002319!3.00e-10!43;CL:0000221!8.34e-10!44;CL:0000133!8.34e-10!44;CL:0000393!2.30e-08!39;CL:0000211!2.30e-08!39;CL:0000540!4.04e-08!33;CL:0000047!4.04e-08!33;CL:0000031!4.04e-08!33;CL:0000404!4.04e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.66e-12,23;CL:0000337,3.66e-12,23;CL:0002319,5.87e-10,43;CL:0000221,1.82e-09,44;CL:0000133,1.82e-09,44;CL:0000540,4.36e-07,33;CL:0000047,4.36e-07,33;CL:0000031,4.36e-07,33;CL:0000404,4.36e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.37e-21,54;UBERON:0001017,8.47e-21,73;UBERON:0001049,4.50e-20,52;UBERON:0005068,4.50e-20,52;UBERON:0006241,4.50e-20,52;UBERON:0007135,4.50e-20,52;UBERON:0001016,1.27e-19,75;UBERON:0002346,1.34e-16,64;UBERON:0003075,1.34e-16,64;UBERON:0007284,1.34e-16,64;UBERON:0003080,4.58e-16,40;UBERON:0002616,7.08e-16,46;UBERON:0002780,9.66e-16,39;UBERON:0001890,9.66e-16,39;UBERON:0006240,9.66e-16,39;UBERON:0010314,2.38e-15,92;UBERON:0000955,3.33e-15,47;UBERON:0006238,3.33e-15,47;UBERON:0004121,1.60e-14,95;UBERON:0000924,1.60e-14,95;UBERON:0006601,1.60e-14,95;UBERON:0002020,6.16e-14,34;UBERON:0003056,1.37e-13,49;UBERON:0010371,6.45e-13,73;UBERON:0003528,1.01e-10,29;UBERON:0002791,1.01e-10,29;UBERON:0001893,1.01e-10,29;UBERON:0000025,5.28e-09,114;UBERON:0000956,1.72e-08,21;UBERON:0001869,1.72e-08,21;UBERON:0000203,1.72e-08,21;UBERON:0004111,3.88e-07,122;UBERON:0002619,5.70e-07,17;UBERON:0000007,8.91e-07,8;UBERON:0003296,8.91e-07,8;UBERON:0010133,8.91e-07,8 | |||
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| |||
|short_description=p@chr2:174162242..174162265,+ | |||
}} |
Revision as of 23:07, 13 September 2013
Short description: | p@chr2:174162242..174162265, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:174162242..174162265, + |
Coexpression cluster: | MCL_coexpression_mm9:989 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.66e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.66e-12 | 23 |
neural cell | 5.87e-10 | 43 |
ectodermal cell | 1.82e-09 | 44 |
neurectodermal cell | 1.82e-09 | 44 |
neuron | 4.36e-07 | 33 |
neuronal stem cell | 4.36e-07 | 33 |
neuroblast | 4.36e-07 | 33 |
electrically signaling cell | 4.36e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.