FFCP PHASE1:Mm9::chr2:121184327..121184449,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12716|HGNC=|MCL_coexpression_id=1|UniProt=P30275,D6RET9,B0R0F0,Q545N7,B0R0E9|association_with_transcript=0bp_to_ENSMUST00000000317,ENSMUST00000126130,ENSMUST00000129130,ENSMUST00000145380,NM_009897,uc008lyu.1,uc008lyv.1_5end|description=CAGE_peak_1_at_Ckmt1_5end|id=chr2:121184327..121184449,+|ontology_enrichment_celltype=CL:0000117!3.04e-09!23;CL:0000337!3.04e-09!23;CL:0000540!1.74e-08!33;CL:0000047!1.74e-08!33;CL:0000031!1.74e-08!33;CL:0000404!1.74e-08!33;CL:0000221!5.53e-07!44;CL:0000133!5.53e-07!44;CL:0002319!8.35e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.71e-09,23;CL:0000337,1.71e-09,23;CL:0000540,1.03e-08,33;CL:0000047,1.03e-08,33;CL:0000031,1.03e-08,33;CL:0000404,1.03e-08,33;CL:0000221,3.67e-07,44;CL:0000133,3.67e-07,44;CL:0002319,5.62e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.87e-22!73;UBERON:0005743!5.87e-22!73;UBERON:0000073!2.05e-21!75;UBERON:0001016!2.05e-21!75;UBERON:0004121!1.38e-20!102;UBERON:0000924!1.38e-20!102;UBERON:0006601!1.38e-20!102;UBERON:0001049!4.14e-20!52;UBERON:0005068!4.14e-20!52;UBERON:0006241!4.14e-20!52;UBERON:0007135!4.14e-20!52;UBERON:0000955!4.29e-19!50;UBERON:0006238!4.29e-19!50;UBERON:0002616!1.22e-18!49;UBERON:0000033!1.49e-18!63;UBERON:0002346!3.03e-17!71;UBERON:0003075!3.03e-17!71;UBERON:0007284!3.03e-17!71;UBERON:0003080!1.25e-14!40;UBERON:0002780!5.36e-14!39;UBERON:0001890!5.36e-14!39;UBERON:0006240!5.36e-14!39;UBERON:0002020!1.08e-13!34;UBERON:0003056!2.88e-13!49;UBERON:0002791!5.26e-11!29;UBERON:0003528!5.26e-11!29;UBERON:0001893!5.26e-11!29;UBERON:0000160!1.47e-09!43;UBERON:0007811!4.85e-09!86;UBERON:0002021!1.53e-07!10;UBERON:0000411!1.53e-07!10;UBERON:0001950!1.53e-07!10;UBERON:0000956!1.54e-07!21;UBERON:0001869!1.54e-07!21;UBERON:0000203!1.54e-07!21;UBERON:0000153!3.12e-07!94;UBERON:0005409!3.29e-07!59;UBERON:0002619!3.73e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-22,73;UBERON:0000073,3.10e-22,54;UBERON:0001016,4.61e-22,75;UBERON:0004121,6.96e-22,95;UBERON:0000924,6.96e-22,95;UBERON:0006601,6.96e-22,95;UBERON:0001049,1.03e-20,52;UBERON:0005068,1.03e-20,52;UBERON:0006241,1.03e-20,52;UBERON:0007135,1.03e-20,52;UBERON:0010371,6.40e-20,73;UBERON:0002346,4.03e-19,64;UBERON:0003075,4.03e-19,64;UBERON:0007284,4.03e-19,64;UBERON:0000955,1.72e-17,47;UBERON:0006238,1.72e-17,47;UBERON:0002616,4.92e-17,46;UBERON:0003080,4.70e-15,40;UBERON:0002780,2.11e-14,39;UBERON:0001890,2.11e-14,39;UBERON:0006240,2.11e-14,39;UBERON:0002020,4.35e-14,34;UBERON:0003056,1.20e-13,49;UBERON:0003528,2.59e-11,29;UBERON:0002791,2.59e-11,29;UBERON:0001893,2.59e-11,29;UBERON:0000160,2.23e-10,31;UBERON:0011216,8.71e-09,194;UBERON:0010314,2.13e-08,92;UBERON:0002021,9.78e-08,10;UBERON:0000411,9.78e-08,10;UBERON:0001950,9.78e-08,10;UBERON:0000956,9.82e-08,21;UBERON:0001869,9.82e-08,21;UBERON:0000203,9.82e-08,21;UBERON:0005409,2.09e-07,47;UBERON:0002619,2.45e-07,17|phase1_expression=27.225304007815,228.229916596142,210.209648597966,225.335837423588,261.96846676194,67.8232258524035,108.629877876919,0.258246646883153,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,69.480368053424,0,0,92.7956052201759,102.316539355958,249.216672425919,233.042239922059,202.973901190107,56.6269789979994,65.7798638673419,181.375557716039,1.27006134691926,0.61506478758457,0,13.8648777480612,23.6053196409059,10.4126371693808,0,0,0,0,0,0,0.503587271902309,0.304130793658544,0.367093504323363,3.12956537739216,13.2995345392072,5.93152693383074,4.6663175777828,2.2397827460058,5.75010257459886,0,0,0,0.257259436035947,0,0,61.5042041013177,92.0444303933337,89.3702278943713,2.37191172448392,1.77858959222228,0,0.988866362566974,0,2.09720077362883,4.2264013585371,10.9910989046986,19.5758610580951,14.5124223332454,438.188610075435,377.022599404404,15.6788222995141,10.7346927540425,31.2534387447407,911.759494674938,584.80800843016,553.751552388758,51.9631973656964,48.6714263964819,39.5894161623138,732.855372378625,450.772850635376,407.207330325199,302.288928695983,283.177273109416,122.837234798873,3.93776205332557,3.17400552448499,1.44932244350839,0,0.679971333707751,1.07940638327563,0.649776417447669,0,35.3919938732015,0.340860645156116,0,0,25.4926589795792,0,0,0,16.0203370348298,11.6545538118545,13.1436355703844,68.9670633503122,0,7.86743337043571,4.16364784238726,8.22056791442781,5.5347719341454,6.33035090321015,4.23319345688537,2.13633205260448,0.741584903203122,0.433798070759735,0,0,0,0,152.84124419886,219.000036164637,233.951971510629,229.911349687732,0,0,0,430.348507010056,309.72790810821,42.7224797183739,387.628234028776,306.091402424406,393.966132484926,339.084239811613,0,0,0.758168275301024,34.9333480771547,1.04096354370163,1.37941262660084,1.98068342785884,4.21973489940002,5.57899293040888,11.1458936647819,15.3670828277955,99.600797734521,0.862271971731369,0.567318240503458,0.527853372491847,0.657587197282725,0.556094498451196,2.43776516565517,6.58502836505419,0.199034266818493,0,0,0,0,0.234526059981096,0.18006206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| ||
|EntrezGene=12716 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P30275,D6RET9,B0R0F0,Q545N7,B0R0E9 | |||
|association_with_transcript=0bp_to_ENSMUST00000000317,ENSMUST00000126130,ENSMUST00000129130,ENSMUST00000145380,NM_009897,uc008lyu.1,uc008lyv.1_5end | |||
|description=CAGE_peak_1_at_Ckmt1_5end | |||
|id=chr2:121184327..121184449,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.04e-09!23;CL:0000337!3.04e-09!23;CL:0000540!1.74e-08!33;CL:0000047!1.74e-08!33;CL:0000031!1.74e-08!33;CL:0000404!1.74e-08!33;CL:0000221!5.53e-07!44;CL:0000133!5.53e-07!44;CL:0002319!8.35e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.71e-09,23;CL:0000337,1.71e-09,23;CL:0000540,1.03e-08,33;CL:0000047,1.03e-08,33;CL:0000031,1.03e-08,33;CL:0000404,1.03e-08,33;CL:0000221,3.67e-07,44;CL:0000133,3.67e-07,44;CL:0002319,5.62e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.87e-22!73;UBERON:0005743!5.87e-22!73;UBERON:0000073!2.05e-21!75;UBERON:0001016!2.05e-21!75;UBERON:0004121!1.38e-20!102;UBERON:0000924!1.38e-20!102;UBERON:0006601!1.38e-20!102;UBERON:0001049!4.14e-20!52;UBERON:0005068!4.14e-20!52;UBERON:0006241!4.14e-20!52;UBERON:0007135!4.14e-20!52;UBERON:0000955!4.29e-19!50;UBERON:0006238!4.29e-19!50;UBERON:0002616!1.22e-18!49;UBERON:0000033!1.49e-18!63;UBERON:0002346!3.03e-17!71;UBERON:0003075!3.03e-17!71;UBERON:0007284!3.03e-17!71;UBERON:0003080!1.25e-14!40;UBERON:0002780!5.36e-14!39;UBERON:0001890!5.36e-14!39;UBERON:0006240!5.36e-14!39;UBERON:0002020!1.08e-13!34;UBERON:0003056!2.88e-13!49;UBERON:0002791!5.26e-11!29;UBERON:0003528!5.26e-11!29;UBERON:0001893!5.26e-11!29;UBERON:0000160!1.47e-09!43;UBERON:0007811!4.85e-09!86;UBERON:0002021!1.53e-07!10;UBERON:0000411!1.53e-07!10;UBERON:0001950!1.53e-07!10;UBERON:0000956!1.54e-07!21;UBERON:0001869!1.54e-07!21;UBERON:0000203!1.54e-07!21;UBERON:0000153!3.12e-07!94;UBERON:0005409!3.29e-07!59;UBERON:0002619!3.73e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-22,73;UBERON:0000073,3.10e-22,54;UBERON:0001016,4.61e-22,75;UBERON:0004121,6.96e-22,95;UBERON:0000924,6.96e-22,95;UBERON:0006601,6.96e-22,95;UBERON:0001049,1.03e-20,52;UBERON:0005068,1.03e-20,52;UBERON:0006241,1.03e-20,52;UBERON:0007135,1.03e-20,52;UBERON:0010371,6.40e-20,73;UBERON:0002346,4.03e-19,64;UBERON:0003075,4.03e-19,64;UBERON:0007284,4.03e-19,64;UBERON:0000955,1.72e-17,47;UBERON:0006238,1.72e-17,47;UBERON:0002616,4.92e-17,46;UBERON:0003080,4.70e-15,40;UBERON:0002780,2.11e-14,39;UBERON:0001890,2.11e-14,39;UBERON:0006240,2.11e-14,39;UBERON:0002020,4.35e-14,34;UBERON:0003056,1.20e-13,49;UBERON:0003528,2.59e-11,29;UBERON:0002791,2.59e-11,29;UBERON:0001893,2.59e-11,29;UBERON:0000160,2.23e-10,31;UBERON:0011216,8.71e-09,194;UBERON:0010314,2.13e-08,92;UBERON:0002021,9.78e-08,10;UBERON:0000411,9.78e-08,10;UBERON:0001950,9.78e-08,10;UBERON:0000956,9.82e-08,21;UBERON:0001869,9.82e-08,21;UBERON:0000203,9.82e-08,21;UBERON:0005409,2.09e-07,47;UBERON:0002619,2.45e-07,17 | |||
|phase1_expression=27.225304007815,228.229916596142,210.209648597966,225.335837423588,261.96846676194,67.8232258524035,108.629877876919,0.258246646883153,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,69.480368053424,0,0,92.7956052201759,102.316539355958,249.216672425919,233.042239922059,202.973901190107,56.6269789979994,65.7798638673419,181.375557716039,1.27006134691926,0.61506478758457,0,13.8648777480612,23.6053196409059,10.4126371693808,0,0,0,0,0,0,0.503587271902309,0.304130793658544,0.367093504323363,3.12956537739216,13.2995345392072,5.93152693383074,4.6663175777828,2.2397827460058,5.75010257459886,0,0,0,0.257259436035947,0,0,61.5042041013177,92.0444303933337,89.3702278943713,2.37191172448392,1.77858959222228,0,0.988866362566974,0,2.09720077362883,4.2264013585371,10.9910989046986,19.5758610580951,14.5124223332454,438.188610075435,377.022599404404,15.6788222995141,10.7346927540425,31.2534387447407,911.759494674938,584.80800843016,553.751552388758,51.9631973656964,48.6714263964819,39.5894161623138,732.855372378625,450.772850635376,407.207330325199,302.288928695983,283.177273109416,122.837234798873,3.93776205332557,3.17400552448499,1.44932244350839,0,0.679971333707751,1.07940638327563,0.649776417447669,0,35.3919938732015,0.340860645156116,0,0,25.4926589795792,0,0,0,16.0203370348298,11.6545538118545,13.1436355703844,68.9670633503122,0,7.86743337043571,4.16364784238726,8.22056791442781,5.5347719341454,6.33035090321015,4.23319345688537,2.13633205260448,0.741584903203122,0.433798070759735,0,0,0,0,152.84124419886,219.000036164637,233.951971510629,229.911349687732,0,0,0,430.348507010056,309.72790810821,42.7224797183739,387.628234028776,306.091402424406,393.966132484926,339.084239811613,0,0,0.758168275301024,34.9333480771547,1.04096354370163,1.37941262660084,1.98068342785884,4.21973489940002,5.57899293040888,11.1458936647819,15.3670828277955,99.600797734521,0.862271971731369,0.567318240503458,0.527853372491847,0.657587197282725,0.556094498451196,2.43776516565517,6.58502836505419,0.199034266818493,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0.536546802799238,0.116765342367169,0.16455984991348,0,0,0,0,0,307.023324903626,27.3726268928897,228.649797824788,235.096553763891,1.49301775374664,1.62565670302307,6.31450560478257,53.6478175498091,120.306521720075,198.215102409287,179.371985263825,176.721978418864,97.015390596904,77.3940676240077,54.7849084804728,206.728463990471,251.800828104019,211.089749649629,2.46568271239006,3.19895835307241,0,3.86937522906097,4.65485969202302,2.87556861550306,3.66771915320692,6.05201606716369,8.63493003127561,7.52722699922983,0.296452627087149,0.166845105716094,0,0,0,0,0.763877555344259,0,0,0,1.43768206527355,0.372140947668503,0,0,0.179397413521912,0.482443521363367,1.47802552133284,1.70542270593436,0.488894929326078,0.509235257325564,0.704070744865506,1.50755631697634,0.476087281772027,0.975668239288994,0.630540576424764,0.8858587585951,0.318909537314974,0.983179888294428,1.72684981865896,1.44649058581512,0,0,25.5717421969899,9.93372286697037,665.482195499398,467.909052876075,0.327869890753351,0,9.78075480190396,13.2749173060857,18.0955654095551,4.77937595905104,7.35235624471901,6.79383673893198,10.1202675418724,18.704374906324,12.2539211163422,149.735733452562,2.55492153374884,0.35613120733451,0,11.2179683621324,29.2039304347918,2.91336763385978,2.41858845571801,6.97838795096823,8.26845300066164,6.14870295887855,35.9215327503827,6.18007340111759,6.41695281092498,17.0659849285341,21.0837217149998,27.8465966770104,69.7901191795265,12.784337676223,30.6580080565128,39.0093403757498,36.1774076630238,31.3929118979644,37.6817257178857,57.8483403317739,0.23467170806371,0.42366414172764,3.74898276693435,11.2122652000206,13.2400829890643,12.1228979105593,21.845138952574,19.0403443704271,173.139616958131,553.679951803382,0,1.23832120777933,0.185194527369712,0,0,0,0,0,0,76.3736494412091,2.37251995185852,3.86306987541013,10.8005340821801,15.0543573130417,30.1340337969725,16.5883146053329,14.0510874733071,55.7540156425983,64.9371016191882,229.274206529076,0,0.448549638131936,0.165458490457098,1.55560950675238,2.0665571756437,0.844780627453891,0.352071715937262,0.2604087696879,0.419437377702843,0,0,2.52808896502543,1.01362607645082,2.46506297195585,0.909445760844565,3.40150721768215,3.9736270956253,1.32214994471966,1.32920574457119,2.42319479875554,1.143102099825,2.62148081355785,3.41102582589133,2.40529604100824,3.15567635890236,12.0167103316062,34.6298087263541,11.3936597894034,29.883461712806,2.89784391048286,2.064507229963,35.3482634835822,44.3742544693666,0,377.2542308682,424.419868059617,422.223993404835,593.065332268066,433.657235014817,400.358765616541,407.038567639779,407.090367714695,366.139066459237,346.899408873719,4.98179268404048,3.99024873401031,6.31714341290296,8.75184181445858,18.0267319860065,28.4957438097522,27.7808409752019,18.5431551515005,28.5618096536716,24.7643267528522,22.3061783903411,18.2967551144494,21.8184712404826,20.9362248363923,20.5044624171539,21.43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| |||
|short_description=p1@Ckmt1 | |||
}} |
Revision as of 21:51, 13 September 2013
Short description: | p1@Ckmt1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ckmt1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000000317, ENSMUST00000126130, ENSMUST00000129130, ENSMUST00000145380, NM_009897, uc008lyu.1, uc008lyv.1_5end |
EntrezGene: | Ckmt1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.71e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.71e-09 | 23 |
neuron | 1.03e-08 | 33 |
neuronal stem cell | 1.03e-08 | 33 |
neuroblast | 1.03e-08 | 33 |
electrically signaling cell | 1.03e-08 | 33 |
ectodermal cell | 3.67e-07 | 44 |
neurectodermal cell | 3.67e-07 | 44 |
neural cell | 5.62e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.