FFCP PHASE1:Hg19::chr6:149806105..149806172,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=340152|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21175|TSSclassifier=S|UniProt=B7WNU7,A2A288|association_with_transcript=0bp_to_ENST00000389942,ENST00000416573,ENST00000542614,NM_207360_5end|coexpression_cluster_id=C901|description=CAGE_peak_1_at_ZC3H12D_5end|id=chr6:149806105..149806172,-|ontology_enrichment_celltype=CL:0000738!5.60e-64!140;CL:0000037!4.74e-59!172;CL:0000566!4.74e-59!172;CL:0002087!2.97e-58!119;CL:0000988!5.30e-57!182;CL:0002032!4.35e-56!165;CL:0000837!4.35e-56!165;CL:0002031!2.07e-55!124;CL:0000542!1.03e-35!53;CL:0000051!1.03e-35!53;CL:0000838!2.84e-35!52;CL:0000557!2.19e-22!71;CL:0000766!4.54e-22!76;CL:0000763!4.83e-22!112;CL:0000049!4.83e-22!112;CL:0002009!6.53e-22!65;CL:0002194!2.44e-20!63;CL:0000576!2.44e-20!63;CL:0000040!2.44e-20!63;CL:0000559!2.44e-20!63;CL:0000839!3.49e-19!70;CL:0000945!1.57e-18!24;CL:0000826!1.57e-18!24;CL:0000791!6.23e-16!18;CL:0000789!6.23e-16!18;CL:0002420!6.23e-16!18;CL:0002419!6.23e-16!18;CL:0000790!6.23e-16!18;CL:0000084!2.18e-15!25;CL:0000827!2.18e-15!25;CL:0002057!3.59e-15!42;CL:0000134!1.54e-14!358;CL:0002320!1.15e-13!365;CL:0000860!2.97e-13!45;CL:0000236!3.44e-12!14;CL:0000219!3.28e-10!390;CL:0000625!3.52e-10!11;CL:0000451!1.20e-07!10;CL:0000624!4.83e-07!6;CL:0000990!5.55e-07!8|ontology_enrichment_celltype_v019=CL:0000542;8.29e-26;53!CL:0000945;1.66e-22;24!CL:0000791;1.14e-21;18!CL:0000789;1.14e-21;18!CL:0002419;1.14e-21;18!CL:0000084;6.44e-20;25!CL:0002087;6.17e-18;104!CL:0000236;3.19e-14;13!CL:0000738;6.37e-14;136!CL:0000625;1.19e-13;11!CL:0000473;4.64e-10;39!CL:0000234;4.64e-10;39!CL:0000988;7.05e-10;177!CL:0000624;2.83e-09;6!CL:0000990;4.05e-09;8!CL:0000860;8.68e-09;33!CL:0002057;8.68e-09;33!CL:0000576;1.17e-08;48!CL:0000451;1.21e-08;10!CL:0000766;1.25e-08;69!CL:0000840;4.76e-07;5!CL:0000763;6.16e-07;100!CL:0000219;8.83e-07;193|ontology_enrichment_celltype_v019_2=CL:0000738,7.64e-72,136;CL:0000037,6.33e-65,168;CL:0002087,8.81e-64,115;CL:0000988,1.46e-63,177;CL:0002032,5.54e-63,161;CL:0000837,5.54e-63,161;CL:0002031,2.35e-61,120;CL:0000542,1.05e-45,53;CL:0000051,1.05e-45,53;CL:0000838,4.47e-45,52;CL:0000945,1.80e-22,24;CL:0000826,1.80e-22,24;CL:0000791,9.39e-22,18;CL:0000789,9.39e-22,18;CL:0002420,9.39e-22,18;CL:0002419,9.39e-22,18;CL:0000790,9.39e-22,18;CL:0000763,1.57e-21,108;CL:0000049,1.57e-21,108;CL:0000766,9.61e-21,72;CL:0000557,1.53e-20,67;CL:0000084,4.97e-20,25;CL:0000827,4.97e-20,25;CL:0002009,2.52e-19,61;CL:0000134,1.86e-18,354;CL:0002320,2.01e-17,361;CL:0002194,2.01e-17,59;CL:0000576,2.01e-17,59;CL:0000040,2.01e-17,59;CL:0000559,2.01e-17,59;CL:0000839,4.09e-17,66;CL:0000236,6.00e-15,14;CL:0000473,6.39e-14,48;CL:0000234,6.39e-14,48;CL:0000219,7.55e-14,386;CL:0000625,1.15e-13,11;CL:0000860,5.57e-11,42;CL:0002057,5.57e-11,42;CL:0000048,1.13e-09,427;CL:0000624,2.87e-09,6;CL:0000990,3.49e-09,8;CL:0000723,4.03e-09,433;CL:0000034,7.39e-09,441;CL:0000451,1.13e-08,10;CL:0000840,4.68e-07,5;CL:0001029,4.68e-07,5|ontology_enrichment_development_v019=CL:0000051;8.29e-26;53!CL:0000790;1.14e-21;18!CL:0002057;3.75e-09;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.04e-33!102;UBERON:0003061!8.04e-33!102;UBERON:0002193!2.27e-29!112;UBERON:0002371!1.21e-20!80;UBERON:0002405!2.76e-19!115;UBERON:0001474!7.35e-19!86;UBERON:0004765!2.07e-13!101;UBERON:0001434!2.07e-13!101;UBERON:0002384!8.62e-13!375;UBERON:0000178!1.51e-09!15;UBERON:0000179!1.51e-09!15;UBERON:0000463!1.51e-09!15|ontology_enrichment_uberon_v019=UBERON:0000178;4.30e-13;15!UBERON:0000179;4.30e-13;15!UBERON:0000463;4.30e-13;15!UBERON:0002390;3.49e-10;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.12e-33,98;UBERON:0003061,6.12e-33,98;UBERON:0002193,1.68e-30,108;UBERON:0002405,1.97e-20,93;UBERON:0002371,1.54e-17,76;UBERON:0002384,1.46e-16,371;UBERON:0001474,2.98e-15,82;UBERON:0000178,4.73e-13,15;UBERON:0000179,4.73e-13,15;UBERON:0000463,4.73e-13,15;UBERON:0004765,1.01e-12,90;UBERON:0001434,3.40e-10,100;UBERON:0004177,1.99e-07,7;UBERON:0005057,1.99e-07,7;UBERON:0003081,4.30e-07,203|phase1_expression=0.181678379270557,0,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,17.8043235392726,13.546597259241,15.4273131374811,6.68719270643137,5.75744097145819,2.63187409637329,0,0,0,4.18322883133629,15.7807848061038,0.587200878669695,4.9859586767869,10.8294001633877,14.5397283379621,11.867520134716,11.0123846446453,11.3333249759042,9.16008904311258,1.51150377475524,0.485168122375632,7.67015821788759,2.05583944010913,0.929119112685311,2.8769239232215,1.2808035326455,2.60130452877444,7.23965929546899,1.29096936716765,2.70852973188684,4.1413314699373,0.545812300115692,1.34834090667051,2.14258724659632,1.28371610830437,0,5.93732340336089,0.598390972864896,0,2.03146467040009,1.70215567407342,0,3.51748131359441,1.5644487552606,1.3031330682307,3.63239701580021,4.78760926783834,0.949387162322653,2.74631872205524,0.4252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0,0,0.31020638566432,0,0,0,0.121917924982269,0,0.205325613712494,0,1.94284397223656,0,0,0,0,0,0,4.93914611890846,1.96703604453562,0,0.245148321753905,0,0.196308467114945,0.594092800654172,0,0.169927114687817,5.35708332485165,7.54157289290853,13.6919383617153,0,0,0,0.730336388246517,2.75237570042724,0.430018749454354,0,0,0,2.1161073620616,0,0.924351257262837,0,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0.20686599172379,1.91910583710883,0.23806443146374,3.48780113114433,2.66921271472189,0.112131862580613,0.0636471582781649,0.606351566874658,1.08858373948481,0,28.7593266372289,1.2192774916755,0.332660356546013,0.244209805832924,0,0,0.538951212639521,0,0.611207220914332,0.813792356631477,0,12.2777014090526,16.9901300920713|short_description=p1@ZC3H12D}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=340152 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21175 | |||
|TSSclassifier=S | |||
|UniProt=B7WNU7,A2A288 | |||
|association_with_transcript=0bp_to_ENST00000389942,ENST00000416573,ENST00000542614,NM_207360_5end | |||
|coexpression_cluster_id=C901 | |||
|description=CAGE_peak_1_at_ZC3H12D_5end | |||
|id=chr6:149806105..149806172,- | |||
|ontology_enrichment_celltype=CL:0000738!5.60e-64!140;CL:0000037!4.74e-59!172;CL:0000566!4.74e-59!172;CL:0002087!2.97e-58!119;CL:0000988!5.30e-57!182;CL:0002032!4.35e-56!165;CL:0000837!4.35e-56!165;CL:0002031!2.07e-55!124;CL:0000542!1.03e-35!53;CL:0000051!1.03e-35!53;CL:0000838!2.84e-35!52;CL:0000557!2.19e-22!71;CL:0000766!4.54e-22!76;CL:0000763!4.83e-22!112;CL:0000049!4.83e-22!112;CL:0002009!6.53e-22!65;CL:0002194!2.44e-20!63;CL:0000576!2.44e-20!63;CL:0000040!2.44e-20!63;CL:0000559!2.44e-20!63;CL:0000839!3.49e-19!70;CL:0000945!1.57e-18!24;CL:0000826!1.57e-18!24;CL:0000791!6.23e-16!18;CL:0000789!6.23e-16!18;CL:0002420!6.23e-16!18;CL:0002419!6.23e-16!18;CL:0000790!6.23e-16!18;CL:0000084!2.18e-15!25;CL:0000827!2.18e-15!25;CL:0002057!3.59e-15!42;CL:0000134!1.54e-14!358;CL:0002320!1.15e-13!365;CL:0000860!2.97e-13!45;CL:0000236!3.44e-12!14;CL:0000219!3.28e-10!390;CL:0000625!3.52e-10!11;CL:0000451!1.20e-07!10;CL:0000624!4.83e-07!6;CL:0000990!5.55e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000542;8.29e-26;53!CL:0000945;1.66e-22;24!CL:0000791;1.14e-21;18!CL:0000789;1.14e-21;18!CL:0002419;1.14e-21;18!CL:0000084;6.44e-20;25!CL:0002087;6.17e-18;104!CL:0000236;3.19e-14;13!CL:0000738;6.37e-14;136!CL:0000625;1.19e-13;11!CL:0000473;4.64e-10;39!CL:0000234;4.64e-10;39!CL:0000988;7.05e-10;177!CL:0000624;2.83e-09;6!CL:0000990;4.05e-09;8!CL:0000860;8.68e-09;33!CL:0002057;8.68e-09;33!CL:0000576;1.17e-08;48!CL:0000451;1.21e-08;10!CL:0000766;1.25e-08;69!CL:0000840;4.76e-07;5!CL:0000763;6.16e-07;100!CL:0000219;8.83e-07;193 | |||
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|ontology_enrichment_development_v019=CL:0000051;8.29e-26;53!CL:0000790;1.14e-21;18!CL:0002057;3.75e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.04e-33!102;UBERON:0003061!8.04e-33!102;UBERON:0002193!2.27e-29!112;UBERON:0002371!1.21e-20!80;UBERON:0002405!2.76e-19!115;UBERON:0001474!7.35e-19!86;UBERON:0004765!2.07e-13!101;UBERON:0001434!2.07e-13!101;UBERON:0002384!8.62e-13!375;UBERON:0000178!1.51e-09!15;UBERON:0000179!1.51e-09!15;UBERON:0000463!1.51e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.30e-13;15!UBERON:0000179;4.30e-13;15!UBERON:0000463;4.30e-13;15!UBERON:0002390;3.49e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.12e-33,98;UBERON:0003061,6.12e-33,98;UBERON:0002193,1.68e-30,108;UBERON:0002405,1.97e-20,93;UBERON:0002371,1.54e-17,76;UBERON:0002384,1.46e-16,371;UBERON:0001474,2.98e-15,82;UBERON:0000178,4.73e-13,15;UBERON:0000179,4.73e-13,15;UBERON:0000463,4.73e-13,15;UBERON:0004765,1.01e-12,90;UBERON:0001434,3.40e-10,100;UBERON:0004177,1.99e-07,7;UBERON:0005057,1.99e-07,7;UBERON:0003081,4.30e-07,203 | |||
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| |||
|short_description=p1@ZC3H12D | |||
}} |
Revision as of 18:41, 13 September 2013
Short description: | p1@ZC3H12D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ZC3H12D_5end |
Coexpression cluster: | C901_immature_CD4_Natural_CD19_CD8_lymphoma_tonsil |
Association with transcript: | 0bp_to_ENST00000389942, ENST00000416573, ENST00000542614, NM_207360_5end |
EntrezGene: | ZC3H12D |
HGNC: | 21175 |
UniProt: | B7WNU7A2A288 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.12e-33 | 98 |
blood island | 6.12e-33 | 98 |
hemolymphoid system | 1.68e-30 | 108 |
immune system | 1.97e-20 | 93 |
bone marrow | 1.54e-17 | 76 |
connective tissue | 1.46e-16 | 371 |
bone element | 2.98e-15 | 82 |
blood | 4.73e-13 | 15 |
haemolymphatic fluid | 4.73e-13 | 15 |
organism substance | 4.73e-13 | 15 |
skeletal element | 1.01e-12 | 90 |
skeletal system | 3.40e-10 | 100 |
hemopoietic organ | 1.99e-07 | 7 |
immune organ | 1.99e-07 | 7 |
lateral plate mesoderm | 4.30e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.