FFCP PHASE1:Hg19::chr6:131571466..131571487,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9465|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=377|TSSclassifier=S|UniProt=O43687,Q2TAJ5|association_with_transcript=-16bp_to_uc003qcm.1,uc003qcn.1_5end|coexpression_cluster_id=C1969|description=CAGE_peak_9_at_AKAP7_5end|id=chr6:131571466..131571487,+|ontology_enrichment_celltype=CL:0000047!1.00e-11!8;CL:0000540!2.70e-08!6;CL:0000031!2.70e-08!6;CL:0000404!2.70e-08!6|ontology_enrichment_celltype_v019=CL:0000540;2.59e-17;6!CL:0000404;2.59e-17;6!CL:0000047;4.32e-14;2!CL:0002319;4.28e-08;25|ontology_enrichment_celltype_v019_2=CL:0000047,1.30e-28,8;CL:0000540,2.43e-17,6;CL:0000031,2.43e-17,6;CL:0000404,2.43e-17,6;CL:0002319,4.00e-08,25|ontology_enrichment_development_v019=CL:0000031;2.59e-17;6!UBERON:0006215;2.73e-09;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;5.19e-11;10!DOID:3095;2.37e-10;22!DOID:2994;2.37e-10;22|ontology_enrichment_disease_v019_2=DOID:171,5.26e-11,10;DOID:3095,2.47e-10,22;DOID:2994,2.47e-10,22|ontology_enrichment_uberon=UBERON:0001017!4.87e-23!82;UBERON:0001893!8.67e-22!34;UBERON:0001869!1.14e-21!32;UBERON:0005743!1.98e-21!86;UBERON:0001049!7.43e-21!57;UBERON:0005068!7.43e-21!57;UBERON:0006241!7.43e-21!57;UBERON:0007135!7.43e-21!57;UBERON:0002791!1.34e-20!33;UBERON:0002619!1.98e-20!22;UBERON:0002780!2.39e-20!41;UBERON:0001890!2.39e-20!41;UBERON:0006240!2.39e-20!41;UBERON:0003080!1.08e-19!42;UBERON:0000073!1.11e-19!94;UBERON:0001016!1.11e-19!94;UBERON:0002616!2.51e-18!59;UBERON:0002020!3.83e-18!34;UBERON:0003528!3.83e-18!34;UBERON:0001950!9.05e-18!20;UBERON:0000956!1.89e-17!25;UBERON:0000203!1.89e-17!25;UBERON:0007023!3.15e-15!115;UBERON:0002346!3.35e-15!90;UBERON:0000955!3.67e-15!69;UBERON:0006238!3.67e-15!69;UBERON:0003075!1.00e-12!86;UBERON:0007284!1.00e-12!86;UBERON:0003056!2.27e-12!61;UBERON:0000924!2.31e-11!173;UBERON:0006601!2.31e-11!173;UBERON:0004121!1.31e-09!169;UBERON:0000033!1.31e-08!123;UBERON:0000153!8.43e-08!129;UBERON:0007811!8.43e-08!129;UBERON:0001871!1.57e-07!7|ontology_enrichment_uberon_v019=UBERON:0002346;1.04e-15;4!UBERON:0000923;1.04e-15;4!UBERON:0010316;1.04e-15;4!UBERON:0005291;1.04e-15;4!UBERON:0000922;7.07e-13;49!UBERON:0002050;1.13e-12;5!UBERON:0005423;1.13e-12;5!UBERON:0000160;1.45e-12;17!UBERON:0002108;3.90e-12;4!UBERON:0005409;1.02e-09;22!UBERON:0002619;7.21e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.32e-12,17;UBERON:0002108,3.98e-12,4;UBERON:0001016,5.79e-11,89;UBERON:0001017,1.52e-10,81;UBERON:0011216,1.92e-09,223;UBERON:0005409,1.47e-08,25;UBERON:0004121,2.40e-07,171;UBERON:0000924,2.40e-07,171;UBERON:0006601,2.40e-07,171;UBERON:0002619,7.03e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.348581828608555,0.310983165046111,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77866236955724,11.712586847186,0,4.35542289869307,0.637938751653163,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0.164254312027618,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0.915694648183434,1.32015199872941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62339619348362,0,0,0.307240764308458,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984685914873589,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,3.79085997398231,0,0,0,1.52581736317083,0.110579259931225,1.18219047581419,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,1.99052386215701,0.796118080530053,23.8301756524114,0,0,0,0.067401132980677,0,0.702793337176017,0,0,0,0,4.83962864194656,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.696418755514666,0,0,0,0,0.576361668616424,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,3.05125192695721,0.169346664131569,1.59045937961861,0.136203406111576,1.76828463311521,1.37539436597234,2.9080823662043,0,0,0.607495566580247,0,0.157611414598396,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9465 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=377 | |||
|TSSclassifier=S | |||
|UniProt=O43687,Q2TAJ5 | |||
|association_with_transcript=-16bp_to_uc003qcm.1,uc003qcn.1_5end | |||
|coexpression_cluster_id=C1969 | |||
|description=CAGE_peak_9_at_AKAP7_5end | |||
|id=chr6:131571466..131571487,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.00e-11!8;CL:0000540!2.70e-08!6;CL:0000031!2.70e-08!6;CL:0000404!2.70e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.59e-17;6!CL:0000404;2.59e-17;6!CL:0000047;4.32e-14;2!CL:0002319;4.28e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.30e-28,8;CL:0000540,2.43e-17,6;CL:0000031,2.43e-17,6;CL:0000404,2.43e-17,6;CL:0002319,4.00e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000031;2.59e-17;6!UBERON:0006215;2.73e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.19e-11;10!DOID:3095;2.37e-10;22!DOID:2994;2.37e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.26e-11,10;DOID:3095,2.47e-10,22;DOID:2994,2.47e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!4.87e-23!82;UBERON:0001893!8.67e-22!34;UBERON:0001869!1.14e-21!32;UBERON:0005743!1.98e-21!86;UBERON:0001049!7.43e-21!57;UBERON:0005068!7.43e-21!57;UBERON:0006241!7.43e-21!57;UBERON:0007135!7.43e-21!57;UBERON:0002791!1.34e-20!33;UBERON:0002619!1.98e-20!22;UBERON:0002780!2.39e-20!41;UBERON:0001890!2.39e-20!41;UBERON:0006240!2.39e-20!41;UBERON:0003080!1.08e-19!42;UBERON:0000073!1.11e-19!94;UBERON:0001016!1.11e-19!94;UBERON:0002616!2.51e-18!59;UBERON:0002020!3.83e-18!34;UBERON:0003528!3.83e-18!34;UBERON:0001950!9.05e-18!20;UBERON:0000956!1.89e-17!25;UBERON:0000203!1.89e-17!25;UBERON:0007023!3.15e-15!115;UBERON:0002346!3.35e-15!90;UBERON:0000955!3.67e-15!69;UBERON:0006238!3.67e-15!69;UBERON:0003075!1.00e-12!86;UBERON:0007284!1.00e-12!86;UBERON:0003056!2.27e-12!61;UBERON:0000924!2.31e-11!173;UBERON:0006601!2.31e-11!173;UBERON:0004121!1.31e-09!169;UBERON:0000033!1.31e-08!123;UBERON:0000153!8.43e-08!129;UBERON:0007811!8.43e-08!129;UBERON:0001871!1.57e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;1.04e-15;4!UBERON:0000923;1.04e-15;4!UBERON:0010316;1.04e-15;4!UBERON:0005291;1.04e-15;4!UBERON:0000922;7.07e-13;49!UBERON:0002050;1.13e-12;5!UBERON:0005423;1.13e-12;5!UBERON:0000160;1.45e-12;17!UBERON:0002108;3.90e-12;4!UBERON:0005409;1.02e-09;22!UBERON:0002619;7.21e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.32e-12,17;UBERON:0002108,3.98e-12,4;UBERON:0001016,5.79e-11,89;UBERON:0001017,1.52e-10,81;UBERON:0011216,1.92e-09,223;UBERON:0005409,1.47e-08,25;UBERON:0004121,2.40e-07,171;UBERON:0000924,2.40e-07,171;UBERON:0006601,2.40e-07,171;UBERON:0002619,7.03e-07,22 | |||
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|short_description=p9@AKAP7 | |||
}} |
Revision as of 17:58, 13 September 2013
Short description: | p9@AKAP7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_AKAP7_5end |
Coexpression cluster: | C1969_neuroectodermal_neuroblastoma_occipital_Neural_colon_carcinoid_parietal |
Association with transcript: | -16bp_to_uc003qcm.1, uc003qcn.1_5end |
EntrezGene: | AKAP7 |
HGNC: | 377 |
UniProt: | O43687Q2TAJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.30e-28 | 8 |
neuron | 2.43e-17 | 6 |
neuroblast | 2.43e-17 | 6 |
electrically signaling cell | 2.43e-17 | 6 |
neural cell | 4.00e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.32e-12 | 17 |
small intestine | 3.98e-12 | 4 |
nervous system | 5.79e-11 | 89 |
central nervous system | 1.52e-10 | 81 |
organ system subdivision | 1.92e-09 | 223 |
gastrointestinal system | 1.47e-08 | 25 |
ectoderm-derived structure | 2.40e-07 | 171 |
ectoderm | 2.40e-07 | 171 |
presumptive ectoderm | 2.40e-07 | 171 |
regional part of cerebral cortex | 7.03e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.26e-11 | 10 |
germ cell and embryonal cancer | 2.47e-10 | 22 |
germ cell cancer | 2.47e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.