FFCP PHASE1:Hg19::chr6:112575733..112575755,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=S | |||
|UniProt=E5RFD7,E9PBW6,E9PBR9 | |||
|association_with_transcript=0bp_to_ENST00000243219,ENST00000368639,ENST00000424408,ENST00000454881_5end | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_2_at_LAMA4_5end | |||
|id=chr6:112575733..112575755,- | |||
|ontology_enrichment_celltype=CL:0000055!6.79e-31!180;CL:0000222!5.52e-26!119;CL:0000057!9.30e-18!75;CL:0000187!3.59e-16!54;CL:0000680!9.63e-16!57;CL:0000056!9.63e-16!57;CL:0000355!9.63e-16!57;CL:0000183!2.53e-15!59;CL:0000393!3.11e-14!60;CL:0000211!3.11e-14!60;CL:0002139!6.02e-14!24;CL:0000192!5.98e-13!42;CL:0000514!5.98e-13!42;CL:0000213!2.05e-11!57;CL:0000215!2.05e-11!57;CL:0000115!5.16e-11!35;CL:0000071!8.19e-11!18;CL:0002546!8.19e-11!18;CL:0000359!1.08e-10!32;CL:0002078!6.87e-10!44;CL:0002620!1.12e-09!23;CL:0000220!6.88e-09!246;CL:0002321!1.06e-08!248;CL:0000136!1.39e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.36e-14;24!CL:0000071;3.99e-11;18!CL:0000359;2.32e-10;32!CL:0002620;5.53e-10;23!CL:0000192;5.91e-10;43!CL:0000115;7.42e-10;36!CL:0000187;1.95e-09;55!CL:0000057;6.03e-08;73!CL:0000393;6.46e-08;61!CL:0000211;6.46e-08;61!CL:0000213;2.67e-07;58!CL:0000215;2.67e-07;58!CL:0002078;4.20e-07;45!CL:0000136;4.25e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.09e-26,121;CL:0000057,4.61e-19,76;CL:0000187,1.17e-16,55;CL:0000680,3.16e-16,58;CL:0000056,3.16e-16,58;CL:0000355,3.16e-16,58;CL:0002139,2.33e-14,24;CL:0000393,7.17e-14,61;CL:0000211,7.17e-14,61;CL:0000192,2.53e-13,43;CL:0000514,2.53e-13,43;CL:0000115,9.52e-12,36;CL:0000213,1.99e-11,58;CL:0000215,1.99e-11,58;CL:0000071,4.03e-11,18;CL:0002546,4.03e-11,18;CL:0000359,1.14e-10,32;CL:0002620,5.99e-10,23;CL:0002078,8.98e-10,45;CL:0000136,8.74e-08,15;CL:0002321,3.66e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;3.99e-11;18!CL:0000514;5.91e-10;43!CL:0000355;1.06e-08;58!CL:0000222;1.59e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p2@LAMA4 | |||
}} |
Revision as of 17:27, 13 September 2013
Short description: | p2@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 0bp_to_ENST00000243219, ENST00000368639, ENST00000424408, ENST00000454881_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFD7E9PBW6E9PBR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.09e-26 | 121 |
fibroblast | 4.61e-19 | 76 |
muscle cell | 1.17e-16 | 55 |
muscle precursor cell | 3.16e-16 | 58 |
myoblast | 3.16e-16 | 58 |
multi-potent skeletal muscle stem cell | 3.16e-16 | 58 |
endothelial cell of vascular tree | 2.33e-14 | 24 |
electrically responsive cell | 7.17e-14 | 61 |
electrically active cell | 7.17e-14 | 61 |
smooth muscle cell | 2.53e-13 | 43 |
smooth muscle myoblast | 2.53e-13 | 43 |
endothelial cell | 9.52e-12 | 36 |
lining cell | 1.99e-11 | 58 |
barrier cell | 1.99e-11 | 58 |
blood vessel endothelial cell | 4.03e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.03e-11 | 18 |
vascular associated smooth muscle cell | 1.14e-10 | 32 |
skin fibroblast | 5.99e-10 | 23 |
meso-epithelial cell | 8.98e-10 | 45 |
fat cell | 8.74e-08 | 15 |
embryonic cell | 3.66e-07 | 250 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.