FFCP PHASE1:Hg19::chr5:82767299..82767310,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1462|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2464|TSSclassifier=S|UniProt=P13611|association_with_transcript=15bp_to_ENST00000265077_5end|coexpression_cluster_id=C4523|description=CAGE_peak_10_at_VCAN_5end|id=chr5:82767299..82767310,+|ontology_enrichment_celltype=CL:0002057!9.82e-20!42;CL:0000860!3.71e-17!45;CL:0002194!7.05e-10!63;CL:0000576!7.05e-10!63;CL:0000040!7.05e-10!63;CL:0000559!7.05e-10!63;CL:0000055!2.80e-09!180;CL:0002009!4.34e-09!65;CL:0000766!1.10e-07!76;CL:0000839!2.25e-07!70;CL:0000557!4.53e-07!71|ontology_enrichment_celltype_v019=CL:0000860;1.28e-26;33!CL:0002057;1.28e-26;33!CL:0000473;4.67e-19;39!CL:0000234;4.67e-19;39!CL:0000576;5.95e-16;48!CL:0000766;6.35e-10;69!CL:0002322;2.86e-08;5!CL:0002334;1.36e-07;12|ontology_enrichment_celltype_v019_2=CL:0000860,8.74e-30,42;CL:0002057,8.74e-30,42;CL:0000473,1.11e-24,48;CL:0000234,1.11e-24,48;CL:0002194,1.27e-17,59;CL:0000576,1.27e-17,59;CL:0000040,1.27e-17,59;CL:0000559,1.27e-17,59;CL:0002009,1.00e-16,61;CL:0000766,3.27e-16,72;CL:0000839,1.00e-14,66;CL:0000557,2.30e-14,67;CL:0002322,1.83e-08,5;CL:0000763,2.85e-08,108;CL:0000049,2.85e-08,108;CL:0002334,2.98e-07,12;CL:0002087,4.92e-07,115;CL:0000034,5.43e-07,441|ontology_enrichment_development_v019=CL:0002057;3.04e-21;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.19e-10!659;UBERON:0000922!1.90e-09!612;UBERON:0000467!2.13e-08!625;UBERON:0000480!2.91e-08!626;UBERON:0000923!6.85e-08!604;UBERON:0005291!6.85e-08!604;UBERON:0006598!6.85e-08!604;UBERON:0002532!6.85e-08!604;UBERON:0002050!9.26e-08!605;UBERON:0005423!9.26e-08!605;UBERON:0001017!3.94e-07!82;UBERON:0002204!9.89e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.46e-11,76;UBERON:0002390,1.53e-10,98;UBERON:0003061,1.53e-10,98;UBERON:0001474,4.61e-10,82;UBERON:0002193,1.17e-08,108;UBERON:0004765,2.09e-08,90;UBERON:0002405,7.21e-08,93;UBERON:0001434,2.65e-07,100;UBERON:0003081,4.25e-07,203;UBERON:0004797,8.10e-07,7|phase1_expression=1.09007027562334,0.642301571672949,1.55049844505568,2.00146596706261,0,0,0,0,0,0.491467873003018,0,0,0,0,0,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,0.369363174230364,0.816002764977012,1.56727360739044,1.71741592278634,0.958120975510189,1.12988375635323,0,0.0821005894499457,0,2.36018566109342,5.37361157336098,2.16742572642506,0,0,0,0,0,0,3.32397245119126,4.41197784434312,3.03815219002193,0,0,0,4.50734540216651,1.88937971844405,2.66842467306598,3.25400651667958,2.05583944010913,2.78735733805593,5.17846306179871,1.7931249457037,1.89185783910868,6.89491361473237,1.93645405075148,6.77132432971709,5.64727018627814,0.545812300115692,1.12361742222542,3.06083892370903,2.56743221660875,0.639337125799041,4.94776950280074,1.99463657621632,2.13112375266347,1.7412554317715,0.56738522469114,2.4912889959823,3.76872997885115,2.60741459210101,1.52032191293582,0,0.736555271975129,1.58231193720442,1.05627643155971,0.637812899895131,0.838634582033504,4.15615935242032,4.8056605709282,4.98249318760948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0.486634870302636,0.756278537312543,4.65631734671384,3.42555664203192,0.392937226493138,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.64619665163954,1.45650098894541,4.58938593198102,1.77334191099179,0,1.06748995729705,0.98667019366864,2.17847724779836,0.808264032418128,0.980771418680752,0,0.576175924479999,0,0,0,0,0.23486899728753,0.485618833104395,0.421352420106746,0.204154171254893,0.245668634623536,0.103325781175765,0,0.494533858557114,0,0,0.841680569770331,1.12606667884768,0,0.877955241761676,0.30648779579902,0.751190294532984,0.340296549480063,1.79389635688862,0.427114777637135,0,1.80054657650641,0.103052529238439,0,0,2.70042131586026,0.584622030967192,0.504867548488229,0.368199594569197,0,1.06502877754984,0.403008392910561,0,0,0.272746120590835,0,3.65921118388786,1.85541675650079,3.02104251460748,5.90868013587612,4.28945446488568,3.6497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.368965315629341,0.686271241194102,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,5.28339124061197,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,1.80980402060889,0,0,0.797814349754612,0,0,0,0,0,0,0,0,0.710783897485092,0.791951872933429,0,0,0.099972991182057,0,0,0,0.479249710983165,0,1.42636905040718,0.144781306667579,0,1.07436577943937,0,0,0,0.256686072559497,0,1.30139853857622,0.773288812777695,1.67516265334349,0.637938751653163,0,0,0,0.24538298343828,0,0,0.831883446123229,0.178428988797162,0,0.468565659970853,0.300946099727719,0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_description=p10@VCAN}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |||
|TSSclassifier=S | |||
|UniProt=P13611 | |||
|association_with_transcript=15bp_to_ENST00000265077_5end | |||
|coexpression_cluster_id=C4523 | |||
|description=CAGE_peak_10_at_VCAN_5end | |||
|id=chr5:82767299..82767310,+ | |||
|ontology_enrichment_celltype=CL:0002057!9.82e-20!42;CL:0000860!3.71e-17!45;CL:0002194!7.05e-10!63;CL:0000576!7.05e-10!63;CL:0000040!7.05e-10!63;CL:0000559!7.05e-10!63;CL:0000055!2.80e-09!180;CL:0002009!4.34e-09!65;CL:0000766!1.10e-07!76;CL:0000839!2.25e-07!70;CL:0000557!4.53e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.28e-26;33!CL:0002057;1.28e-26;33!CL:0000473;4.67e-19;39!CL:0000234;4.67e-19;39!CL:0000576;5.95e-16;48!CL:0000766;6.35e-10;69!CL:0002322;2.86e-08;5!CL:0002334;1.36e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.74e-30,42;CL:0002057,8.74e-30,42;CL:0000473,1.11e-24,48;CL:0000234,1.11e-24,48;CL:0002194,1.27e-17,59;CL:0000576,1.27e-17,59;CL:0000040,1.27e-17,59;CL:0000559,1.27e-17,59;CL:0002009,1.00e-16,61;CL:0000766,3.27e-16,72;CL:0000839,1.00e-14,66;CL:0000557,2.30e-14,67;CL:0002322,1.83e-08,5;CL:0000763,2.85e-08,108;CL:0000049,2.85e-08,108;CL:0002334,2.98e-07,12;CL:0002087,4.92e-07,115;CL:0000034,5.43e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.04e-21;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.19e-10!659;UBERON:0000922!1.90e-09!612;UBERON:0000467!2.13e-08!625;UBERON:0000480!2.91e-08!626;UBERON:0000923!6.85e-08!604;UBERON:0005291!6.85e-08!604;UBERON:0006598!6.85e-08!604;UBERON:0002532!6.85e-08!604;UBERON:0002050!9.26e-08!605;UBERON:0005423!9.26e-08!605;UBERON:0001017!3.94e-07!82;UBERON:0002204!9.89e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.46e-11,76;UBERON:0002390,1.53e-10,98;UBERON:0003061,1.53e-10,98;UBERON:0001474,4.61e-10,82;UBERON:0002193,1.17e-08,108;UBERON:0004765,2.09e-08,90;UBERON:0002405,7.21e-08,93;UBERON:0001434,2.65e-07,100;UBERON:0003081,4.25e-07,203;UBERON:0004797,8.10e-07,7 | |||
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| |||
|short_description=p10@VCAN | |||
}} |
Revision as of 16:42, 13 September 2013
Short description: | p10@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_VCAN_5end |
Coexpression cluster: | C4523_Fibroblast_iPS_H9_serous_Smooth_HES3GFP_hepatoblastoma |
Association with transcript: | 15bp_to_ENST00000265077_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.74e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.74e-30 | 42 |
defensive cell | 1.11e-24 | 48 |
phagocyte | 1.11e-24 | 48 |
monopoietic cell | 1.27e-17 | 59 |
monocyte | 1.27e-17 | 59 |
monoblast | 1.27e-17 | 59 |
promonocyte | 1.27e-17 | 59 |
macrophage dendritic cell progenitor | 1.00e-16 | 61 |
myeloid leukocyte | 3.27e-16 | 72 |
myeloid lineage restricted progenitor cell | 1.00e-14 | 66 |
granulocyte monocyte progenitor cell | 2.30e-14 | 67 |
embryonic stem cell | 1.83e-08 | 5 |
myeloid cell | 2.85e-08 | 108 |
common myeloid progenitor | 2.85e-08 | 108 |
preadipocyte | 2.98e-07 | 12 |
nongranular leukocyte | 4.92e-07 | 115 |
stem cell | 5.43e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.46e-11 | 76 |
hematopoietic system | 1.53e-10 | 98 |
blood island | 1.53e-10 | 98 |
bone element | 4.61e-10 | 82 |
hemolymphoid system | 1.17e-08 | 108 |
skeletal element | 2.09e-08 | 90 |
immune system | 7.21e-08 | 93 |
skeletal system | 2.65e-07 | 100 |
lateral plate mesoderm | 4.25e-07 | 203 |
blood vessel layer | 8.10e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.