FFCP PHASE1:Hg19::chr5:121413171..121413182,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4015|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6664|TSSclassifier=S|UniProt=|association_with_transcript=-4bp_to_ENST00000508067_5end|coexpression_cluster_id=C421|description=CAGE_peak_5_at_LOX_5end|id=chr5:121413171..121413182,-|ontology_enrichment_celltype=CL:0000055!5.67e-41!180;CL:0000057!2.56e-24!75;CL:0000222!4.63e-18!119;CL:0000680!1.26e-17!57;CL:0000056!1.26e-17!57;CL:0000355!1.26e-17!57;CL:0000187!1.96e-16!54;CL:0000192!1.47e-15!42;CL:0000514!1.47e-15!42;CL:0000393!1.88e-15!60;CL:0000211!1.88e-15!60;CL:0000183!3.92e-15!59;CL:0000359!5.70e-13!32;CL:0000144!8.37e-12!625;CL:0002371!1.44e-10!591;CL:0002620!1.63e-10!23;CL:0000048!1.69e-10!430;CL:0000220!4.06e-10!246;CL:0002321!6.53e-10!248;CL:0000723!1.15e-09!436;CL:0000034!2.15e-09!444;CL:0002334!7.56e-09!12;CL:0000548!2.41e-08!679;CL:0000004!2.41e-08!679;CL:0000255!2.41e-08!679;CL:0000012!4.12e-08!682|ontology_enrichment_celltype_v019=CL:0000359;9.53e-14;32!CL:0002620;1.80e-13;23!CL:0000192;1.71e-11;43!CL:0002334;7.53e-11;12!CL:0000057;1.03e-10;73!CL:0002320;3.60e-09;188!CL:0000187;4.02e-09;55!CL:0000134;1.78e-08;55!CL:0000048;1.58e-07;58!CL:0000499;1.70e-07;28!CL:0000723;2.66e-07;61!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002494;5.70e-07;16|ontology_enrichment_celltype_v019_2=CL:0000057,6.55e-29,76;CL:0000048,2.07e-20,427;CL:0000723,2.46e-19,433;CL:0000680,3.10e-18,58;CL:0000056,3.10e-18,58;CL:0000355,3.10e-18,58;CL:0000034,5.82e-18,441;CL:0000187,8.94e-17,55;CL:0000192,2.87e-16,43;CL:0000514,2.87e-16,43;CL:0000222,1.40e-15,121;CL:0000393,3.30e-15,61;CL:0000211,3.30e-15,61;CL:0000359,1.69e-14,32;CL:0002620,1.65e-13,23;CL:0002334,7.10e-11,12;CL:0000499,1.35e-07,28;CL:0002320,1.40e-07,361;CL:0000134,4.61e-07,354;CL:0002494,5.46e-07,16|ontology_enrichment_development_v019=CL:0000514;1.71e-11;43!CL:0000355;2.32e-09;58|ontology_enrichment_disease=DOID:2394!1.60e-08!14|ontology_enrichment_disease_v019=DOID:2394;6.65e-10;14|ontology_enrichment_disease_v019_2=DOID:2394,6.78e-10,14|ontology_enrichment_uberon=UBERON:0004290!1.88e-19!70;UBERON:0000914!4.77e-19!83;UBERON:0002329!4.77e-19!83;UBERON:0003077!4.77e-19!83;UBERON:0003059!4.77e-19!83;UBERON:0007282!4.77e-19!83;UBERON:0009618!4.77e-19!83;UBERON:0007285!4.77e-19!83;UBERON:0001134!2.35e-17!61;UBERON:0002036!2.35e-17!61;UBERON:0003082!2.35e-17!61;UBERON:0002049!3.02e-17!79;UBERON:0007798!3.02e-17!79;UBERON:0002385!4.94e-17!63;UBERON:0001015!4.94e-17!63;UBERON:0000383!4.94e-17!63;UBERON:0004872!9.83e-16!84;UBERON:0000486!1.06e-15!82;UBERON:0000055!4.94e-15!69;UBERON:0001981!2.56e-14!60;UBERON:0007500!2.56e-14!60;UBERON:0004537!2.56e-14!60;UBERON:0006965!2.56e-14!60;UBERON:0005256!6.11e-14!143;UBERON:0001637!3.34e-13!42;UBERON:0003509!3.34e-13!42;UBERON:0004572!3.34e-13!42;UBERON:0004535!3.63e-13!110;UBERON:0000490!4.57e-13!138;UBERON:0001009!1.91e-12!113;UBERON:0003914!2.08e-11!118;UBERON:0004573!4.81e-11!33;UBERON:0004571!4.81e-11!33;UBERON:0002100!4.32e-09!216;UBERON:0003102!4.27e-07!95;UBERON:0000475!4.33e-07!365;UBERON:0002199!7.93e-07!45;UBERON:0002416!7.93e-07!45|ontology_enrichment_uberon_v019=UBERON:0004573;1.57e-11;33!UBERON:0004571;1.57e-11;33!UBERON:0001637;3.64e-10;42!UBERON:0003509;3.64e-10;42!UBERON:0004572;3.64e-10;42!UBERON:0002384;9.18e-09;198!UBERON:0002385;1.86e-07;31!UBERON:0001015;1.86e-07;31!UBERON:0000383;1.86e-07;31!UBERON:0002097;4.54e-07;41!UBERON:0004457;4.78e-07;9!UBERON:0000042;4.78e-07;9!UBERON:0000947;5.83e-07;21!UBERON:0010191;5.83e-07;21!UBERON:0002199;7.00e-07;46!UBERON:0002416;7.00e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.85e-20,71;UBERON:0003059,1.85e-20,71;UBERON:0007282,1.85e-20,71;UBERON:0004290,1.85e-20,71;UBERON:0009618,1.85e-20,71;UBERON:0007524,1.89e-20,73;UBERON:0003077,6.72e-20,72;UBERON:0007285,6.72e-20,72;UBERON:0007503,2.26e-19,78;UBERON:0001134,1.32e-17,62;UBERON:0002036,1.32e-17,62;UBERON:0003082,1.32e-17,62;UBERON:0000486,7.63e-17,83;UBERON:0002385,1.58e-16,64;UBERON:0001015,1.58e-16,64;UBERON:0000383,1.58e-16,64;UBERON:0001637,3.77e-14,42;UBERON:0003509,3.77e-14,42;UBERON:0004572,3.77e-14,42;UBERON:0004872,9.19e-14,83;UBERON:0005256,1.56e-13,122;UBERON:0002049,4.30e-13,78;UBERON:0007798,4.30e-13,78;UBERON:0004573,7.56e-13,33;UBERON:0004571,7.56e-13,33;UBERON:0000490,3.36e-12,148;UBERON:0004535,1.17e-11,109;UBERON:0000055,1.67e-11,68;UBERON:0003104,3.48e-11,160;UBERON:0009142,3.48e-11,160;UBERON:0007500,3.51e-11,59;UBERON:0001981,3.51e-11,59;UBERON:0004537,3.51e-11,59;UBERON:0006965,3.51e-11,59;UBERON:0001009,7.55e-11,112;UBERON:0002199,8.35e-10,46;UBERON:0002416,8.35e-10,46;UBERON:0003914,1.57e-09,117;UBERON:0002097,2.77e-09,41;UBERON:0002100,2.92e-08,199;UBERON:0000926,3.04e-08,315;UBERON:0004120,3.04e-08,315;UBERON:0006603,3.04e-08,315;UBERON:0002384,1.13e-07,371;UBERON:0000947,7.60e-07,21;UBERON:0010191,7.60e-07,21|phase1_expression=12.1724514111273,74.0787812662802,14.2363948136931,79.057905698973,36.2038486486103,97.7019146992413,0,1.26343974685366,0.26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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-4bp_to_ENST00000508067_5end | |||
|coexpression_cluster_id=C421 | |||
|description=CAGE_peak_5_at_LOX_5end | |||
|id=chr5:121413171..121413182,- | |||
|ontology_enrichment_celltype=CL:0000055!5.67e-41!180;CL:0000057!2.56e-24!75;CL:0000222!4.63e-18!119;CL:0000680!1.26e-17!57;CL:0000056!1.26e-17!57;CL:0000355!1.26e-17!57;CL:0000187!1.96e-16!54;CL:0000192!1.47e-15!42;CL:0000514!1.47e-15!42;CL:0000393!1.88e-15!60;CL:0000211!1.88e-15!60;CL:0000183!3.92e-15!59;CL:0000359!5.70e-13!32;CL:0000144!8.37e-12!625;CL:0002371!1.44e-10!591;CL:0002620!1.63e-10!23;CL:0000048!1.69e-10!430;CL:0000220!4.06e-10!246;CL:0002321!6.53e-10!248;CL:0000723!1.15e-09!436;CL:0000034!2.15e-09!444;CL:0002334!7.56e-09!12;CL:0000548!2.41e-08!679;CL:0000004!2.41e-08!679;CL:0000255!2.41e-08!679;CL:0000012!4.12e-08!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.53e-14;32!CL:0002620;1.80e-13;23!CL:0000192;1.71e-11;43!CL:0002334;7.53e-11;12!CL:0000057;1.03e-10;73!CL:0002320;3.60e-09;188!CL:0000187;4.02e-09;55!CL:0000134;1.78e-08;55!CL:0000048;1.58e-07;58!CL:0000499;1.70e-07;28!CL:0000723;2.66e-07;61!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002494;5.70e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.55e-29,76;CL:0000048,2.07e-20,427;CL:0000723,2.46e-19,433;CL:0000680,3.10e-18,58;CL:0000056,3.10e-18,58;CL:0000355,3.10e-18,58;CL:0000034,5.82e-18,441;CL:0000187,8.94e-17,55;CL:0000192,2.87e-16,43;CL:0000514,2.87e-16,43;CL:0000222,1.40e-15,121;CL:0000393,3.30e-15,61;CL:0000211,3.30e-15,61;CL:0000359,1.69e-14,32;CL:0002620,1.65e-13,23;CL:0002334,7.10e-11,12;CL:0000499,1.35e-07,28;CL:0002320,1.40e-07,361;CL:0000134,4.61e-07,354;CL:0002494,5.46e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;1.71e-11;43!CL:0000355;2.32e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!1.60e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.65e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.78e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!1.88e-19!70;UBERON:0000914!4.77e-19!83;UBERON:0002329!4.77e-19!83;UBERON:0003077!4.77e-19!83;UBERON:0003059!4.77e-19!83;UBERON:0007282!4.77e-19!83;UBERON:0009618!4.77e-19!83;UBERON:0007285!4.77e-19!83;UBERON:0001134!2.35e-17!61;UBERON:0002036!2.35e-17!61;UBERON:0003082!2.35e-17!61;UBERON:0002049!3.02e-17!79;UBERON:0007798!3.02e-17!79;UBERON:0002385!4.94e-17!63;UBERON:0001015!4.94e-17!63;UBERON:0000383!4.94e-17!63;UBERON:0004872!9.83e-16!84;UBERON:0000486!1.06e-15!82;UBERON:0000055!4.94e-15!69;UBERON:0001981!2.56e-14!60;UBERON:0007500!2.56e-14!60;UBERON:0004537!2.56e-14!60;UBERON:0006965!2.56e-14!60;UBERON:0005256!6.11e-14!143;UBERON:0001637!3.34e-13!42;UBERON:0003509!3.34e-13!42;UBERON:0004572!3.34e-13!42;UBERON:0004535!3.63e-13!110;UBERON:0000490!4.57e-13!138;UBERON:0001009!1.91e-12!113;UBERON:0003914!2.08e-11!118;UBERON:0004573!4.81e-11!33;UBERON:0004571!4.81e-11!33;UBERON:0002100!4.32e-09!216;UBERON:0003102!4.27e-07!95;UBERON:0000475!4.33e-07!365;UBERON:0002199!7.93e-07!45;UBERON:0002416!7.93e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.57e-11;33!UBERON:0004571;1.57e-11;33!UBERON:0001637;3.64e-10;42!UBERON:0003509;3.64e-10;42!UBERON:0004572;3.64e-10;42!UBERON:0002384;9.18e-09;198!UBERON:0002385;1.86e-07;31!UBERON:0001015;1.86e-07;31!UBERON:0000383;1.86e-07;31!UBERON:0002097;4.54e-07;41!UBERON:0004457;4.78e-07;9!UBERON:0000042;4.78e-07;9!UBERON:0000947;5.83e-07;21!UBERON:0010191;5.83e-07;21!UBERON:0002199;7.00e-07;46!UBERON:0002416;7.00e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.85e-20,71;UBERON:0003059,1.85e-20,71;UBERON:0007282,1.85e-20,71;UBERON:0004290,1.85e-20,71;UBERON:0009618,1.85e-20,71;UBERON:0007524,1.89e-20,73;UBERON:0003077,6.72e-20,72;UBERON:0007285,6.72e-20,72;UBERON:0007503,2.26e-19,78;UBERON:0001134,1.32e-17,62;UBERON:0002036,1.32e-17,62;UBERON:0003082,1.32e-17,62;UBERON:0000486,7.63e-17,83;UBERON:0002385,1.58e-16,64;UBERON:0001015,1.58e-16,64;UBERON:0000383,1.58e-16,64;UBERON:0001637,3.77e-14,42;UBERON:0003509,3.77e-14,42;UBERON:0004572,3.77e-14,42;UBERON:0004872,9.19e-14,83;UBERON:0005256,1.56e-13,122;UBERON:0002049,4.30e-13,78;UBERON:0007798,4.30e-13,78;UBERON:0004573,7.56e-13,33;UBERON:0004571,7.56e-13,33;UBERON:0000490,3.36e-12,148;UBERON:0004535,1.17e-11,109;UBERON:0000055,1.67e-11,68;UBERON:0003104,3.48e-11,160;UBERON:0009142,3.48e-11,160;UBERON:0007500,3.51e-11,59;UBERON:0001981,3.51e-11,59;UBERON:0004537,3.51e-11,59;UBERON:0006965,3.51e-11,59;UBERON:0001009,7.55e-11,112;UBERON:0002199,8.35e-10,46;UBERON:0002416,8.35e-10,46;UBERON:0003914,1.57e-09,117;UBERON:0002097,2.77e-09,41;UBERON:0002100,2.92e-08,199;UBERON:0000926,3.04e-08,315;UBERON:0004120,3.04e-08,315;UBERON:0006603,3.04e-08,315;UBERON:0002384,1.13e-07,371;UBERON:0000947,7.60e-07,21;UBERON:0010191,7.60e-07,21 | |||
|phase1_expression=12.1724514111273,74.0787812662802,14.2363948136931,79.057905698973,36.2038486486103,97.7019146992413,0,1.26343974685366,0.261185628199839,1.47440361900905,4.18680700783456,0,0,1.23766352960047,3.31397375727916,34.2885824690405,20.4916139528152,22.6396128020086,11.7103871709722,2.33930010345897,3.87601313364081,2.82109249330279,0.572471974262113,3.96935832711364,3.26410862946487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,3.06870148424473,14.0961269429981,4.51204119572301,16.3676566425731,1.5905718941022,14.5990461090791,1.03988298880475,7.09534071880205,2.28370442802128,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0,0,1.13061588384802,0.838998872419812,0.825354125820202,1.04497483268405,2.32575083252396,1.77883131343355,1.33888245105868,0.402829317109147,0,3.66093086322254,0,4.0507097394088,0.982297011124877,0.673588117878509,0.563057402416611,1.53316637465883,0.949265659568129,0.732806975721629,0,0,0,21.866765874594,20.0076208430036,25.8197902585777,79.7405805681702,15.2507404345294,4.48542080113846,4.2699598291882,7.89336154934912,1.55605517699883,3.3677668017422,3.59616186849609,0.908144565869588,2.88087962239999,0,2.49728061464256,1.71141546463335,4.03511437489863,7.16350441726966,12.302343771978,7.72479436862367,0.204154171254893,1.10550885580591,1.13658359293342,7.12801714369232,39.3154417552905,0.910161361938026,5.74894513452991,0,2.12701483782339,0.554128230968366,11.4134181429018,43.8277547992598,21.3338043647367,3.51639767796065,64.2214895766126,13.4541154955697,12.7159140695737,43.8133000283227,18.8586128506343,45.3447350480307,17.1227507825063,27.5105421553264,30.3029086051328,40.8942714275465,16.4769318569716,17.2961280796129,57.8665635802081,20.5534280384386,7.12154487704048,0,0,0,0.121973706129595,0,0.464775771478074,0.207322110030741,0.252320850875628,0,0,6.43240938192885,2.76269842704961,13.9310378409594,26.7095408217747,0,0.505754070234305,0.241011029883482,0.661763836394364,0.217879444092406,0.237270619111097,0.269662616320329,0.392442930250692,0.38474715694639,0.738155454624648,4.20725321410337,0.4115740113314,8.82052268313252,0,0,0.590789906681404,0,0.122988438543114,3.77449182656756,0.109750285408626,0,0,0,0,2.07986957055916,5.77325368101093,0.231860809950154,2.58299127318808,0.288732895522148,1.38895653772983,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514137463516618,0,0,1.45770409648969,8.7192013766656,1.83345714552375,9.56610696607556,0,1.690605505112,3.45719551560332,4.16029747645464,0.257207374262142,1.41849132023278,2.1313774321288,13.2969534102077,2.17048642156577,3.29296134712308,0,7.46323092359346,0.791951872933429,6.63166629531089,10.4584015032035,22.5938960071449,0,0,0,10.3038687861381,8.04033550838797,1.42636905040718,27.50844826684,8.42452922456572,1.43248770591916,0,0,0,0,0.508189248444927,0,1.54657762555539,0.502548796003046,3.82763250991898,0,0,0,2.82190430954022,1.00034104211935,0.813795071099207,19.5492609838959,82.0773348466944,16.7164559935971,14.4083940441037,5.71797589482666,15.9185252839189,4.1389228517002,6.64225598535437,5.16233671916769,7.21134000085088,0,1.37257369524342,0,0,0,0,1.66435439510497,1.20956117331872,23.0740261271462,11.5096479966047,92.6178311629143,33.5724571049937,17.3980464682679,32.8141999132959,59.3672265779964,34.5429714117948,20.7747218616359,4.5169935807595,14.0198695879578,28.7039634796099,0.604297247958111,0.601519410909855,0.0920809889358963,5.51109351190112,26.2211281929673,9.30983346211911,0,0.231046011313244,0,1.46139224653261,0.949964660035881,0,0.340187410553031,2.15915916102139,3.08454505380579,0,0.501689773854853,0,0,0,0,0,0,0.328014645699706,2.27764876265012,0.103041011647722,0,0,0,0,36.9573038641567,0.290012154876366,0.462145851343933,2.14905144616581,1.10269257987624,2.0409846524972,5.22060098091223,1.61930592090592,1.15741646340759,0.330569830721956,0.768760269460425,0,0.50578890427775,15.8047486761077,236.10926012298,3.485186350803,2.15623506123262,1.06461206063404,0.869932992075073,1.8532421910392,12.3087402598112,1.116475108079,0.632758849437452,5.90953601163857,0.511795582622668,2.99557291623744,2.86382923133343,16.4839214441838,5.57604618508276,27.4537029736055,9.18936738296354,2.22400729730648,6.34041284692033,5.47635993110675,0.48763373908959,23.6402084942346,8.45201174054043,3.41249778519964,21.0694093611032,6.78048699721457,6.61638412255349,15.2590964305481,32.4453655087784,4.05142873986681,2.62357900818653,1.42037263873893,4.64735247149625,8.45086807596724,1.57752487424457,3.04572027140676,4.9933947207375,0.354761064070598,25.3329162357197,51.0407084087848,0,1.74967360122491,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.111443384277478,0,0.95497793895076,0.2969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| |||
|short_description=p5@LOX | |||
}} |
Revision as of 12:52, 13 September 2013
Short description: | p5@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LOX_5end |
Coexpression cluster: | C421_Smooth_Fibroblast_epithelioid_hepatic_Sertoli_Ewing_tenocyte |
Association with transcript: | -4bp_to_ENST00000508067_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.55e-29 | 76 |
multi fate stem cell | 2.07e-20 | 427 |
somatic stem cell | 2.46e-19 | 433 |
muscle precursor cell | 3.10e-18 | 58 |
myoblast | 3.10e-18 | 58 |
multi-potent skeletal muscle stem cell | 3.10e-18 | 58 |
stem cell | 5.82e-18 | 441 |
muscle cell | 8.94e-17 | 55 |
smooth muscle cell | 2.87e-16 | 43 |
smooth muscle myoblast | 2.87e-16 | 43 |
mesodermal cell | 1.40e-15 | 121 |
electrically responsive cell | 3.30e-15 | 61 |
electrically active cell | 3.30e-15 | 61 |
vascular associated smooth muscle cell | 1.69e-14 | 32 |
skin fibroblast | 1.65e-13 | 23 |
preadipocyte | 7.10e-11 | 12 |
stromal cell | 1.35e-07 | 28 |
connective tissue cell | 1.40e-07 | 361 |
mesenchymal cell | 4.61e-07 | 354 |
cardiocyte | 5.46e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.78e-10 | 14 |
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