FFCP PHASE1:Hg19::chr4:77356342..77356353,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57619|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30422|TSSclassifier=S|UniProt=Q8TF72,B3KY47|association_with_transcript=89bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end|coexpression_cluster_id=C2796|description=CAGE_peak_17_at_SHROOM3_5end|id=chr4:77356342..77356353,+|ontology_enrichment_celltype=CL:0000128!3.30e-12!7;CL:0000126!3.30e-12!7;CL:0000127!3.30e-12!7;CL:0002453!3.30e-12!7;CL:0002319!4.24e-10!25;CL:0002605!9.53e-09!3;CL:0000064!1.59e-08!3;CL:0005012!1.59e-08!3;CL:0000067!1.59e-08!3;CL:0002304!1.59e-08!3;CL:0000047!2.87e-07!8;CL:0000133!5.59e-07!59|ontology_enrichment_celltype_v019=CL:0002605;4.57e-33;3!CL:0000064;6.61e-32;3!CL:0000067;6.61e-32;3!CL:0005012;6.61e-32;3!CL:0002304;6.61e-32;3!CL:0000128;1.50e-14;7!CL:0000126;1.50e-14;7!CL:0000127;1.50e-14;7!CL:0002319;7.14e-14;25!CL:0000540;6.95e-08;6!CL:0000404;6.95e-08;6!CL:0002149;6.95e-08;6!CL:0002255;6.95e-08;6|ontology_enrichment_celltype_v019_2=CL:0002605,4.82e-33,3;CL:0000064,4.57e-32,3;CL:0000067,4.57e-32,3;CL:0005012,4.57e-32,3;CL:0002304,4.57e-32,3;CL:0000128,1.54e-14,7;CL:0000126,1.54e-14,7;CL:0000127,1.54e-14,7;CL:0002453,1.54e-14,7;CL:0002319,7.56e-14,25;CL:0000133,6.33e-13,59;CL:0000047,1.96e-12,8;CL:0000221,1.89e-10,72;CL:0000540,7.33e-08,6;CL:0000031,7.33e-08,6;CL:0000404,7.33e-08,6;CL:0002149,7.85e-08,6;CL:0002255,7.85e-08,6|ontology_enrichment_development_v019=CL:0000133;6.93e-10;59!CL:0000031;6.95e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:6193;1.25e-11;1!DOID:3001;6.95e-08;6!DOID:299;6.51e-07;25|ontology_enrichment_disease_v019_2=DOID:6193,1.19e-11,1;DOID:3001,7.85e-08,6;DOID:299,6.88e-07,25|ontology_enrichment_uberon=UBERON:0005743!4.47e-24!86;UBERON:0003075!2.55e-23!86;UBERON:0007284!2.55e-23!86;UBERON:0000073!2.34e-22!94;UBERON:0001016!2.34e-22!94;UBERON:0001017!2.50e-22!82;UBERON:0002346!7.61e-22!90;UBERON:0001049!1.46e-21!57;UBERON:0005068!1.46e-21!57;UBERON:0006241!1.46e-21!57;UBERON:0007135!1.46e-21!57;UBERON:0002616!8.00e-19!59;UBERON:0003056!2.21e-17!61;UBERON:0000955!3.83e-16!69;UBERON:0006238!3.83e-16!69;UBERON:0000153!4.07e-16!129;UBERON:0007811!4.07e-16!129;UBERON:0002020!3.18e-15!34;UBERON:0003528!3.18e-15!34;UBERON:0000033!3.53e-15!123;UBERON:0004121!3.62e-15!169;UBERON:0000924!1.50e-14!173;UBERON:0006601!1.50e-14!173;UBERON:0001869!1.72e-14!32;UBERON:0002780!1.11e-13!41;UBERON:0001890!1.11e-13!41;UBERON:0006240!1.11e-13!41;UBERON:0001893!2.05e-13!34;UBERON:0003080!3.02e-13!42;UBERON:0000956!4.72e-13!25;UBERON:0000203!4.72e-13!25;UBERON:0002791!3.54e-12!33;UBERON:0000488!1.27e-10!4;UBERON:0003076!3.72e-10!15;UBERON:0003057!3.72e-10!15;UBERON:0001778!1.59e-08!3;UBERON:0001775!1.59e-08!3;UBERON:0002619!1.67e-08!22;UBERON:0007023!1.75e-08!115;UBERON:0001950!7.84e-08!20;UBERON:0004733!7.94e-08!12;UBERON:0002028!7.94e-08!12;UBERON:0007277!7.94e-08!12;UBERON:0007625!1.00e-07!11;UBERON:0000475!3.15e-07!365;UBERON:0004732!3.83e-07!13;UBERON:0002203!5.02e-07!6;UBERON:0001768!5.02e-07!6;UBERON:0001872!5.78e-07!5;UBERON:0000988!6.22e-07!3|ontology_enrichment_uberon_v019=UBERON:0001778;6.61e-32;3!UBERON:0001775;6.61e-32;3!UBERON:0000488;4.09e-24;4!UBERON:0002203;2.67e-16;6!UBERON:0001768;2.67e-16;6!UBERON:0002200;2.67e-16;6!UBERON:0007625;2.11e-15;11!UBERON:0001801;3.71e-12;14!UBERON:0006876;3.78e-09;11!UBERON:0000019;5.17e-09;19!UBERON:0000047;5.17e-09;19!UBERON:0004088;5.17e-09;19!UBERON:0010230;5.17e-09;19!UBERON:0000970;1.43e-08;20!UBERON:0002104;3.59e-08;21!UBERON:0001456;3.59e-08;21!UBERON:0000020;1.78e-07;23!UBERON:0001032;3.60e-07;24!UBERON:0004456;3.60e-07;24!UBERON:0000956;8.53e-07;25!UBERON:0000203;8.53e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0001778,4.57e-32,3;UBERON:0001775,4.57e-32,3;UBERON:0000488,3.10e-24,4;UBERON:0002203,2.22e-16,6;UBERON:0001768,2.22e-16,6;UBERON:0002200,2.22e-16,6;UBERON:0007625,1.68e-15,11;UBERON:0001801,3.11e-12,14;UBERON:0003056,5.62e-10,61;UBERON:0006876,3.43e-09,11;UBERON:0000019,1.27e-08,20;UBERON:0000047,1.27e-08,20;UBERON:0010312,1.27e-08,20;UBERON:0004088,1.27e-08,20;UBERON:0010230,1.27e-08,20;UBERON:0003072,1.27e-08,20;UBERON:0004128,1.27e-08,20;UBERON:0003071,1.27e-08,20;UBERON:0000970,3.20e-08,21;UBERON:0002104,3.20e-08,21;UBERON:0001456,7.44e-08,22;UBERON:0000020,3.26e-07,24;UBERON:0001032,3.26e-07,24;UBERON:0004456,3.26e-07,24;UBERON:0003075,3.27e-07,82;UBERON:0007284,3.27e-07,82;UBERON:0002346,7.75e-07,86;UBERON:0000956,9.07e-07,25;UBERON:0000203,9.07e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.369363174230364,0.204000691244253,0,6.5834277040143,3.01123735160345,12.3031786802907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,2.3633704291017,2.21729397462564,1.84453049955565,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=S | |||
|UniProt=Q8TF72,B3KY47 | |||
|association_with_transcript=89bp_to_ENST00000296043,NM_020859,uc011cbx.1_5end | |||
|coexpression_cluster_id=C2796 | |||
|description=CAGE_peak_17_at_SHROOM3_5end | |||
|id=chr4:77356342..77356353,+ | |||
|ontology_enrichment_celltype=CL:0000128!3.30e-12!7;CL:0000126!3.30e-12!7;CL:0000127!3.30e-12!7;CL:0002453!3.30e-12!7;CL:0002319!4.24e-10!25;CL:0002605!9.53e-09!3;CL:0000064!1.59e-08!3;CL:0005012!1.59e-08!3;CL:0000067!1.59e-08!3;CL:0002304!1.59e-08!3;CL:0000047!2.87e-07!8;CL:0000133!5.59e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002605;4.57e-33;3!CL:0000064;6.61e-32;3!CL:0000067;6.61e-32;3!CL:0005012;6.61e-32;3!CL:0002304;6.61e-32;3!CL:0000128;1.50e-14;7!CL:0000126;1.50e-14;7!CL:0000127;1.50e-14;7!CL:0002319;7.14e-14;25!CL:0000540;6.95e-08;6!CL:0000404;6.95e-08;6!CL:0002149;6.95e-08;6!CL:0002255;6.95e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.82e-33,3;CL:0000064,4.57e-32,3;CL:0000067,4.57e-32,3;CL:0005012,4.57e-32,3;CL:0002304,4.57e-32,3;CL:0000128,1.54e-14,7;CL:0000126,1.54e-14,7;CL:0000127,1.54e-14,7;CL:0002453,1.54e-14,7;CL:0002319,7.56e-14,25;CL:0000133,6.33e-13,59;CL:0000047,1.96e-12,8;CL:0000221,1.89e-10,72;CL:0000540,7.33e-08,6;CL:0000031,7.33e-08,6;CL:0000404,7.33e-08,6;CL:0002149,7.85e-08,6;CL:0002255,7.85e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000133;6.93e-10;59!CL:0000031;6.95e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;1.25e-11;1!DOID:3001;6.95e-08;6!DOID:299;6.51e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.19e-11,1;DOID:3001,7.85e-08,6;DOID:299,6.88e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0005743!4.47e-24!86;UBERON:0003075!2.55e-23!86;UBERON:0007284!2.55e-23!86;UBERON:0000073!2.34e-22!94;UBERON:0001016!2.34e-22!94;UBERON:0001017!2.50e-22!82;UBERON:0002346!7.61e-22!90;UBERON:0001049!1.46e-21!57;UBERON:0005068!1.46e-21!57;UBERON:0006241!1.46e-21!57;UBERON:0007135!1.46e-21!57;UBERON:0002616!8.00e-19!59;UBERON:0003056!2.21e-17!61;UBERON:0000955!3.83e-16!69;UBERON:0006238!3.83e-16!69;UBERON:0000153!4.07e-16!129;UBERON:0007811!4.07e-16!129;UBERON:0002020!3.18e-15!34;UBERON:0003528!3.18e-15!34;UBERON:0000033!3.53e-15!123;UBERON:0004121!3.62e-15!169;UBERON:0000924!1.50e-14!173;UBERON:0006601!1.50e-14!173;UBERON:0001869!1.72e-14!32;UBERON:0002780!1.11e-13!41;UBERON:0001890!1.11e-13!41;UBERON:0006240!1.11e-13!41;UBERON:0001893!2.05e-13!34;UBERON:0003080!3.02e-13!42;UBERON:0000956!4.72e-13!25;UBERON:0000203!4.72e-13!25;UBERON:0002791!3.54e-12!33;UBERON:0000488!1.27e-10!4;UBERON:0003076!3.72e-10!15;UBERON:0003057!3.72e-10!15;UBERON:0001778!1.59e-08!3;UBERON:0001775!1.59e-08!3;UBERON:0002619!1.67e-08!22;UBERON:0007023!1.75e-08!115;UBERON:0001950!7.84e-08!20;UBERON:0004733!7.94e-08!12;UBERON:0002028!7.94e-08!12;UBERON:0007277!7.94e-08!12;UBERON:0007625!1.00e-07!11;UBERON:0000475!3.15e-07!365;UBERON:0004732!3.83e-07!13;UBERON:0002203!5.02e-07!6;UBERON:0001768!5.02e-07!6;UBERON:0001872!5.78e-07!5;UBERON:0000988!6.22e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;6.61e-32;3!UBERON:0001775;6.61e-32;3!UBERON:0000488;4.09e-24;4!UBERON:0002203;2.67e-16;6!UBERON:0001768;2.67e-16;6!UBERON:0002200;2.67e-16;6!UBERON:0007625;2.11e-15;11!UBERON:0001801;3.71e-12;14!UBERON:0006876;3.78e-09;11!UBERON:0000019;5.17e-09;19!UBERON:0000047;5.17e-09;19!UBERON:0004088;5.17e-09;19!UBERON:0010230;5.17e-09;19!UBERON:0000970;1.43e-08;20!UBERON:0002104;3.59e-08;21!UBERON:0001456;3.59e-08;21!UBERON:0000020;1.78e-07;23!UBERON:0001032;3.60e-07;24!UBERON:0004456;3.60e-07;24!UBERON:0000956;8.53e-07;25!UBERON:0000203;8.53e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,4.57e-32,3;UBERON:0001775,4.57e-32,3;UBERON:0000488,3.10e-24,4;UBERON:0002203,2.22e-16,6;UBERON:0001768,2.22e-16,6;UBERON:0002200,2.22e-16,6;UBERON:0007625,1.68e-15,11;UBERON:0001801,3.11e-12,14;UBERON:0003056,5.62e-10,61;UBERON:0006876,3.43e-09,11;UBERON:0000019,1.27e-08,20;UBERON:0000047,1.27e-08,20;UBERON:0010312,1.27e-08,20;UBERON:0004088,1.27e-08,20;UBERON:0010230,1.27e-08,20;UBERON:0003072,1.27e-08,20;UBERON:0004128,1.27e-08,20;UBERON:0003071,1.27e-08,20;UBERON:0000970,3.20e-08,21;UBERON:0002104,3.20e-08,21;UBERON:0001456,7.44e-08,22;UBERON:0000020,3.26e-07,24;UBERON:0001032,3.26e-07,24;UBERON:0004456,3.26e-07,24;UBERON:0003075,3.27e-07,82;UBERON:0007284,3.27e-07,82;UBERON:0002346,7.75e-07,86;UBERON:0000956,9.07e-07,25;UBERON:0000203,9.07e-07,25 | |||
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|short_description=p17@SHROOM3 | |||
}} |
Revision as of 11:47, 13 September 2013
Short description: | p17@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_SHROOM3_5end |
Coexpression cluster: | C2796_Astrocyte_signet_Ciliary_small_Neural_anaplastic_Lens |
Association with transcript: | 89bp_to_ENST00000296043, NM_020859, uc011cbx.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72B3KY47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.82e-33 | 3 |
ciliated cell | 4.57e-32 | 3 |
ciliated epithelial cell | 4.57e-32 | 3 |
multi-ciliated epithelial cell | 4.57e-32 | 3 |
non-pigmented ciliary epithelial cell | 4.57e-32 | 3 |
oligodendrocyte | 1.54e-14 | 7 |
macroglial cell | 1.54e-14 | 7 |
astrocyte | 1.54e-14 | 7 |
oligodendrocyte precursor cell | 1.54e-14 | 7 |
neural cell | 7.56e-14 | 25 |
neurectodermal cell | 6.33e-13 | 59 |
neuronal stem cell | 1.96e-12 | 8 |
ectodermal cell | 1.89e-10 | 72 |
neuron | 7.33e-08 | 6 |
neuroblast | 7.33e-08 | 6 |
electrically signaling cell | 7.33e-08 | 6 |
epithelial cell of uterus | 7.85e-08 | 6 |
stromal cell of endometrium | 7.85e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 4.57e-32 | 3 |
ciliary body | 4.57e-32 | 3 |
atypical epithelium | 3.10e-24 | 4 |
vasculature of eye | 2.22e-16 | 6 |
uvea | 2.22e-16 | 6 |
vasculature of head | 2.22e-16 | 6 |
pigment epithelium of eye | 1.68e-15 | 11 |
anterior segment of eyeball | 3.11e-12 | 14 |
pre-chordal neural plate | 5.62e-10 | 61 |
vasculature of organ | 3.43e-09 | 11 |
camera-type eye | 1.27e-08 | 20 |
simple eye | 1.27e-08 | 20 |
immature eye | 1.27e-08 | 20 |
ocular region | 1.27e-08 | 20 |
eyeball of camera-type eye | 1.27e-08 | 20 |
optic cup | 1.27e-08 | 20 |
optic vesicle | 1.27e-08 | 20 |
eye primordium | 1.27e-08 | 20 |
eye | 3.20e-08 | 21 |
visual system | 3.20e-08 | 21 |
face | 7.44e-08 | 22 |
sense organ | 3.26e-07 | 24 |
sensory system | 3.26e-07 | 24 |
entire sense organ system | 3.26e-07 | 24 |
neural plate | 3.27e-07 | 82 |
presumptive neural plate | 3.27e-07 | 82 |
neurectoderm | 7.75e-07 | 86 |
cerebral cortex | 9.07e-07 | 25 |
pallium | 9.07e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.19e-11 | 1 |
female reproductive endometrioid cancer | 7.85e-08 | 6 |
adenocarcinoma | 6.88e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.