FFCP PHASE1:Hg19::chr4:41218683..41218708,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=323|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=582|TSSclassifier=S|UniProt=|association_with_transcript=22bp_to_ENST00000502682_5end|description=CAGE_peak_7_at_APBB2_5end|id=chr4:41218683..41218708,-|ontology_enrichment_celltype=CL:0002139!2.57e-15!24;CL:0000115!4.65e-15!35;CL:0000071!1.76e-11!18;CL:0002546!1.76e-11!18;CL:0000222!5.29e-11!119;CL:0002078!6.22e-10!44;CL:0000213!7.94e-10!57;CL:0000215!7.94e-10!57|ontology_enrichment_celltype_v019=CL:0002139;1.80e-28;24!CL:0000115;5.50e-24;36!CL:0000071;5.74e-21;18!CL:0002078;1.46e-15;45!CL:0000213;2.83e-10;58!CL:0000215;2.83e-10;58!CL:1000413;7.07e-10;9!CL:0002543;1.10e-09;6!CL:0002138;4.47e-09;6!CL:0002544;1.98e-07;6|ontology_enrichment_celltype_v019_2=CL:0000115,3.99e-29,36;CL:0002139,1.48e-28,24;CL:0002078,6.41e-23,45;CL:0000071,5.25e-21,18;CL:0002546,5.25e-21,18;CL:0000213,1.43e-16,58;CL:0000215,1.43e-16,58;CL:0000222,2.29e-11,121;CL:1000413,9.58e-10,9;CL:0002543,1.16e-09,6;CL:0005020,4.02e-09,6;CL:0002138,4.02e-09,6;CL:0005022,4.02e-09,6;CL:0002544,1.74e-07,6|ontology_enrichment_development_v019=CL:0002546;5.74e-21;18!CL:0005022;4.47e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002049!1.07e-16!79;UBERON:0007798!1.07e-16!79;UBERON:0000055!2.32e-16!69;UBERON:0001981!4.85e-15!60;UBERON:0007500!4.85e-15!60;UBERON:0004537!4.85e-15!60;UBERON:0006965!4.85e-15!60;UBERON:0000477!1.84e-14!286;UBERON:0004872!2.70e-14!84;UBERON:0000468!3.49e-14!659;UBERON:0004111!1.50e-13!241;UBERON:0000467!6.08e-13!625;UBERON:0000480!1.00e-12!626;UBERON:0001009!1.31e-12!113;UBERON:0004535!7.00e-12!110;UBERON:0000025!1.20e-11!194;UBERON:0001986!1.76e-11!18;UBERON:0004638!1.76e-11!18;UBERON:0004852!1.76e-11!18;UBERON:0003914!5.32e-11!118;UBERON:0000487!1.68e-09!22;UBERON:0002050!5.79e-08!605;UBERON:0005423!5.79e-08!605;UBERON:0000923!1.11e-07!604;UBERON:0005291!1.11e-07!604;UBERON:0006598!1.11e-07!604;UBERON:0002532!1.11e-07!604;UBERON:0000475!2.19e-07!365;UBERON:0000922!2.19e-07!612;UBERON:0000483!3.77e-07!309;UBERON:0006914!4.30e-07!25;UBERON:0000119!4.65e-07!312;UBERON:0007023!6.96e-07!115|ontology_enrichment_uberon_v019=UBERON:0004638;5.74e-21;18!UBERON:0001986;5.74e-21;18!UBERON:0004852;5.74e-21;18!UBERON:0000487;6.18e-18;22!UBERON:0006914;4.89e-15;25!UBERON:0000055;7.31e-12;65!UBERON:0007500;1.39e-10;56!UBERON:0001981;1.39e-10;56!UBERON:0004537;1.39e-10;56!UBERON:0000490;2.52e-10;33!UBERON:0001638;3.40e-10;9!UBERON:0003920;3.40e-10;9!UBERON:0004582;3.40e-10;9!UBERON:0003915;7.07e-10;9!UBERON:0004700;7.07e-10;9!UBERON:0001917;7.07e-10;9!UBERON:0002049;1.32e-08;75!UBERON:0007798;1.32e-08;75!UBERON:0000947;3.02e-07;21!UBERON:0010191;3.02e-07;21!UBERON:0001009;3.85e-07;112!UBERON:0004535;7.18e-07;109|ontology_enrichment_uberon_v019_2=UBERON:0000055,8.31e-25,68;UBERON:0002049,3.96e-22,78;UBERON:0007798,3.96e-22,78;UBERON:0004638,5.25e-21,18;UBERON:0001986,5.25e-21,18;UBERON:0004852,5.25e-21,18;UBERON:0007500,1.71e-20,59;UBERON:0001981,1.71e-20,59;UBERON:0004537,1.71e-20,59;UBERON:0006965,1.71e-20,59;UBERON:0000487,3.70e-18,22;UBERON:0004872,2.98e-17,83;UBERON:0001009,1.21e-16,112;UBERON:0004535,9.25e-16,109;UBERON:0006914,3.15e-15,25;UBERON:0003914,6.34e-12,117;UBERON:0001638,5.89e-10,9;UBERON:0003920,5.89e-10,9;UBERON:0004582,5.89e-10,9;UBERON:0003915,9.58e-10,9;UBERON:0004700,9.58e-10,9;UBERON:0001917,9.58e-10,9;UBERON:0003081,1.73e-09,203;UBERON:0004111,8.44e-09,240;UBERON:0000025,1.77e-08,192;UBERON:0001637,2.15e-07,42;UBERON:0003509,2.15e-07,42;UBERON:0004572,2.15e-07,42;UBERON:0000947,2.17e-07,21;UBERON:0010191,2.17e-07,21;UBERON:0000926,7.53e-07,315;UBERON:0004120,7.53e-07,315;UBERON:0006603,7.53e-07,315|phase1_expression=1.2717486548939,0.642301571672949,0.845726424575827,0,1.34088328328186,0.872338524100369,0,1.26343974685366,1.30592814099919,0,0,0.436882744260345,0.527533956456907,0.495065411840187,0.331397375727916,2.01697543935533,1.20538905604795,1.46062018077475,0.487932798790507,0.123121058076788,0.204000691244253,0,0.286235987131057,0.273748850145768,0.376627918784408,0.152826811495903,0.0821005894499457,0,0,0,0,0,0,0.369754010166788,0,0,0,0.553995408531877,0.200544447470142,0.651032612147555,0,0,1.03030227053675,0,0,0,0.697287110717054,0,0.309706370895104,0.28769239232215,0.512321413058201,0,0,1.29096936716765,0,0,0,0,2.14258724659632,0.320929027076094,1.27867425159808,0,0.199463657621632,0,3.77272010217159,5.6738522469114,1.86846674698672,0,0,0,1.21079900526674,2.94622108790052,1.58231193720442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,0,0,0.434539556882471,1.5905718941022,1.45990461090791,0.661743720148475,0.665188192387692,0.087834785693126,0.589405839739707,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,3.57772333260069,1.72046919021225,1.04142150482278,3.9571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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=323 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=582 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=22bp_to_ENST00000502682_5end | |||
|description=CAGE_peak_7_at_APBB2_5end | |||
|id=chr4:41218683..41218708,- | |||
|ontology_enrichment_celltype=CL:0002139!2.57e-15!24;CL:0000115!4.65e-15!35;CL:0000071!1.76e-11!18;CL:0002546!1.76e-11!18;CL:0000222!5.29e-11!119;CL:0002078!6.22e-10!44;CL:0000213!7.94e-10!57;CL:0000215!7.94e-10!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.80e-28;24!CL:0000115;5.50e-24;36!CL:0000071;5.74e-21;18!CL:0002078;1.46e-15;45!CL:0000213;2.83e-10;58!CL:0000215;2.83e-10;58!CL:1000413;7.07e-10;9!CL:0002543;1.10e-09;6!CL:0002138;4.47e-09;6!CL:0002544;1.98e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.99e-29,36;CL:0002139,1.48e-28,24;CL:0002078,6.41e-23,45;CL:0000071,5.25e-21,18;CL:0002546,5.25e-21,18;CL:0000213,1.43e-16,58;CL:0000215,1.43e-16,58;CL:0000222,2.29e-11,121;CL:1000413,9.58e-10,9;CL:0002543,1.16e-09,6;CL:0005020,4.02e-09,6;CL:0002138,4.02e-09,6;CL:0005022,4.02e-09,6;CL:0002544,1.74e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;5.74e-21;18!CL:0005022;4.47e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;5.74e-21;18!UBERON:0001986;5.74e-21;18!UBERON:0004852;5.74e-21;18!UBERON:0000487;6.18e-18;22!UBERON:0006914;4.89e-15;25!UBERON:0000055;7.31e-12;65!UBERON:0007500;1.39e-10;56!UBERON:0001981;1.39e-10;56!UBERON:0004537;1.39e-10;56!UBERON:0000490;2.52e-10;33!UBERON:0001638;3.40e-10;9!UBERON:0003920;3.40e-10;9!UBERON:0004582;3.40e-10;9!UBERON:0003915;7.07e-10;9!UBERON:0004700;7.07e-10;9!UBERON:0001917;7.07e-10;9!UBERON:0002049;1.32e-08;75!UBERON:0007798;1.32e-08;75!UBERON:0000947;3.02e-07;21!UBERON:0010191;3.02e-07;21!UBERON:0001009;3.85e-07;112!UBERON:0004535;7.18e-07;109 | |||
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| |||
|short_description=p7@APBB2 | |||
}} |
Revision as of 10:54, 13 September 2013
Short description: | p7@APBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_APBB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_ENST00000502682_5end |
EntrezGene: | APBB2 |
HGNC: | 582 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.99e-29 | 36 |
endothelial cell of vascular tree | 1.48e-28 | 24 |
meso-epithelial cell | 6.41e-23 | 45 |
blood vessel endothelial cell | 5.25e-21 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.25e-21 | 18 |
lining cell | 1.43e-16 | 58 |
barrier cell | 1.43e-16 | 58 |
mesodermal cell | 2.29e-11 | 121 |
endothelial cell of artery | 9.58e-10 | 9 |
vein endothelial cell | 1.16e-09 | 6 |
lymphangioblast | 4.02e-09 | 6 |
endothelial cell of lymphatic vessel | 4.02e-09 | 6 |
vascular lymphangioblast | 4.02e-09 | 6 |
aortic endothelial cell | 1.74e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
vessel | 8.31e-25 | 68 |
vasculature | 3.96e-22 | 78 |
vascular system | 3.96e-22 | 78 |
blood vessel endothelium | 5.25e-21 | 18 |
endothelium | 5.25e-21 | 18 |
cardiovascular system endothelium | 5.25e-21 | 18 |
epithelial tube open at both ends | 1.71e-20 | 59 |
blood vessel | 1.71e-20 | 59 |
blood vasculature | 1.71e-20 | 59 |
vascular cord | 1.71e-20 | 59 |
simple squamous epithelium | 3.70e-18 | 22 |
splanchnic layer of lateral plate mesoderm | 2.98e-17 | 83 |
circulatory system | 1.21e-16 | 112 |
cardiovascular system | 9.25e-16 | 109 |
squamous epithelium | 3.15e-15 | 25 |
epithelial tube | 6.34e-12 | 117 |
vein | 5.89e-10 | 9 |
venous blood vessel | 5.89e-10 | 9 |
venous system | 5.89e-10 | 9 |
endothelial tube | 9.58e-10 | 9 |
arterial system endothelium | 9.58e-10 | 9 |
endothelium of artery | 9.58e-10 | 9 |
lateral plate mesoderm | 1.73e-09 | 203 |
anatomical conduit | 8.44e-09 | 240 |
tube | 1.77e-08 | 192 |
artery | 2.15e-07 | 42 |
arterial blood vessel | 2.15e-07 | 42 |
arterial system | 2.15e-07 | 42 |
aorta | 2.17e-07 | 21 |
aortic system | 2.17e-07 | 21 |
mesoderm | 7.53e-07 | 315 |
mesoderm-derived structure | 7.53e-07 | 315 |
presumptive mesoderm | 7.53e-07 | 315 |
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