FFCP PHASE1:Hg19::chr4:134076101..134076115,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57575|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13404|TSSclassifier=S|UniProt=|association_with_transcript=53bp_to_ENST00000511112_5end|coexpression_cluster_id=C2776|description=CAGE_peak_9_at_PCDH10_5end|id=chr4:134076101..134076115,+|ontology_enrichment_celltype=CL:0002150!9.75e-09!3;CL:0000861!9.75e-09!3|ontology_enrichment_celltype_v019=CL:0002127;3.08e-14;1!CL:0000911;3.08e-14;1!CL:0000814;3.08e-14;1!CL:0000946;7.55e-14;1!CL:0000786;7.55e-14;1|ontology_enrichment_celltype_v019_2=CL:0002127,3.08e-14,1;CL:0000914,3.08e-14,1;CL:0000911,3.08e-14,1;CL:0000814,3.08e-14,1;CL:0002042,3.08e-14,1;CL:0002039,3.08e-14,1;CL:0002040,3.08e-14,1;CL:0002041,3.08e-14,1;CL:0000946,6.65e-14,1;CL:0000786,6.65e-14,1;CL:0000980,6.65e-14,1;CL:0000893,9.25e-08,2;CL:0002489,9.25e-08,2;CL:0000809,9.25e-08,2;CL:0000808,9.25e-08,2;CL:0000894,9.25e-08,2;CL:0000806,9.25e-08,2;CL:0000807,9.25e-08,2;CL:0000805,9.25e-08,2;CL:0002425,9.25e-08,2;CL:0000785,1.36e-07,2;CL:0000955,1.36e-07,2;CL:0000818,1.36e-07,2;CL:0000954,1.36e-07,2;CL:0000816,1.36e-07,2|ontology_enrichment_development_v019=UBERON:0008947;8.42e-34;29!CL:0002425;9.25e-08;2!CL:0000954;1.45e-07;2!UBERON:0010122;1.99e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:6193;1.42e-13;1!DOID:3350;1.99e-07;2|ontology_enrichment_disease_v019_2=DOID:6193,1.42e-13,1;DOID:0050687,3.85e-09,143;DOID:305,1.68e-08,106;DOID:3350,1.99e-07,2|ontology_enrichment_uberon=UBERON:0001893!2.73e-38!34;UBERON:0001869!9.97e-38!32;UBERON:0002791!5.02e-36!33;UBERON:0002780!1.07e-33!41;UBERON:0001890!1.07e-33!41;UBERON:0006240!1.07e-33!41;UBERON:0003080!9.55e-33!42;UBERON:0002020!7.28e-32!34;UBERON:0003528!7.28e-32!34;UBERON:0002619!4.88e-30!22;UBERON:0000955!5.30e-30!69;UBERON:0006238!5.30e-30!69;UBERON:0001950!1.95e-29!20;UBERON:0000956!3.36e-29!25;UBERON:0000203!3.36e-29!25;UBERON:0001049!1.32e-28!57;UBERON:0005068!1.32e-28!57;UBERON:0006241!1.32e-28!57;UBERON:0007135!1.32e-28!57;UBERON:0001017!1.16e-27!82;UBERON:0003056!2.54e-26!61;UBERON:0002346!2.58e-26!90;UBERON:0001737!3.78e-26!9;UBERON:0005743!5.60e-26!86;UBERON:0002616!2.85e-25!59;UBERON:0000073!1.79e-24!94;UBERON:0001016!1.79e-24!94;UBERON:0003075!1.39e-22!86;UBERON:0007284!1.39e-22!86;UBERON:0000153!1.79e-20!129;UBERON:0007811!1.79e-20!129;UBERON:0000033!2.02e-20!123;UBERON:0000924!1.21e-17!173;UBERON:0006601!1.21e-17!173;UBERON:0000200!2.50e-16!6;UBERON:0004121!4.48e-15!169;UBERON:0001557!4.42e-14!19;UBERON:0007023!3.86e-13!115;UBERON:0000369!1.50e-11!4;UBERON:0002435!1.50e-11!4;UBERON:0000204!1.50e-11!4;UBERON:0010082!1.50e-11!4;UBERON:0001872!1.59e-09!5;UBERON:0005383!4.97e-09!3;UBERON:0005382!4.97e-09!3;UBERON:0000064!8.64e-09!219;UBERON:0002021!9.50e-09!5;UBERON:0002771!1.21e-08!3;UBERON:0000477!2.43e-08!286;UBERON:0001871!7.01e-08!7;UBERON:0002420!2.14e-07!9;UBERON:0007245!2.14e-07!9;UBERON:0010009!2.14e-07!9;UBERON:0010011!2.14e-07!9;UBERON:0000454!2.14e-07!9;UBERON:0001873!6.48e-07!2;UBERON:0010122!6.48e-07!2;UBERON:0001870!6.86e-07!2|ontology_enrichment_uberon_v019=UBERON:0001737;1.47e-110;9!UBERON:0001557;1.47e-110;9!UBERON:0000072;1.61e-24;37!UBERON:0000065;1.08e-20;44!UBERON:0001004;6.57e-11;65!UBERON:0001873;1.99e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.57e-110,9;UBERON:0001557,3.47e-64,19;UBERON:0008947,1.68e-25,38;UBERON:0003258,1.68e-25,38;UBERON:0000072,2.37e-25,47;UBERON:0000065,6.35e-22,54;UBERON:0001004,1.09e-15,74;UBERON:0001041,3.62e-13,87;UBERON:0004921,2.70e-09,118;UBERON:0011216,4.85e-09,223;UBERON:0001873,1.87e-07,2;UBERON:0010122,1.87e-07,2;UBERON:0001007,2.43e-07,145;UBERON:0001555,2.43e-07,145;UBERON:0007026,2.43e-07,145|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54920400119532,3.37169380156203,3.37415441836875,3.74999507290139,1.30727666455444,3.32178866755535,2.02246962240247,1.17732879075208,1.53898862778556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26800176769578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57575 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13404 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=53bp_to_ENST00000511112_5end | |||
|coexpression_cluster_id=C2776 | |||
|description=CAGE_peak_9_at_PCDH10_5end | |||
|id=chr4:134076101..134076115,+ | |||
|ontology_enrichment_celltype=CL:0002150!9.75e-09!3;CL:0000861!9.75e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0002127;3.08e-14;1!CL:0000911;3.08e-14;1!CL:0000814;3.08e-14;1!CL:0000946;7.55e-14;1!CL:0000786;7.55e-14;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,3.08e-14,1;CL:0000914,3.08e-14,1;CL:0000911,3.08e-14,1;CL:0000814,3.08e-14,1;CL:0002042,3.08e-14,1;CL:0002039,3.08e-14,1;CL:0002040,3.08e-14,1;CL:0002041,3.08e-14,1;CL:0000946,6.65e-14,1;CL:0000786,6.65e-14,1;CL:0000980,6.65e-14,1;CL:0000893,9.25e-08,2;CL:0002489,9.25e-08,2;CL:0000809,9.25e-08,2;CL:0000808,9.25e-08,2;CL:0000894,9.25e-08,2;CL:0000806,9.25e-08,2;CL:0000807,9.25e-08,2;CL:0000805,9.25e-08,2;CL:0002425,9.25e-08,2;CL:0000785,1.36e-07,2;CL:0000955,1.36e-07,2;CL:0000818,1.36e-07,2;CL:0000954,1.36e-07,2;CL:0000816,1.36e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.42e-34;29!CL:0002425;9.25e-08;2!CL:0000954;1.45e-07;2!UBERON:0010122;1.99e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;1.42e-13;1!DOID:3350;1.99e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.42e-13,1;DOID:0050687,3.85e-09,143;DOID:305,1.68e-08,106;DOID:3350,1.99e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001893!2.73e-38!34;UBERON:0001869!9.97e-38!32;UBERON:0002791!5.02e-36!33;UBERON:0002780!1.07e-33!41;UBERON:0001890!1.07e-33!41;UBERON:0006240!1.07e-33!41;UBERON:0003080!9.55e-33!42;UBERON:0002020!7.28e-32!34;UBERON:0003528!7.28e-32!34;UBERON:0002619!4.88e-30!22;UBERON:0000955!5.30e-30!69;UBERON:0006238!5.30e-30!69;UBERON:0001950!1.95e-29!20;UBERON:0000956!3.36e-29!25;UBERON:0000203!3.36e-29!25;UBERON:0001049!1.32e-28!57;UBERON:0005068!1.32e-28!57;UBERON:0006241!1.32e-28!57;UBERON:0007135!1.32e-28!57;UBERON:0001017!1.16e-27!82;UBERON:0003056!2.54e-26!61;UBERON:0002346!2.58e-26!90;UBERON:0001737!3.78e-26!9;UBERON:0005743!5.60e-26!86;UBERON:0002616!2.85e-25!59;UBERON:0000073!1.79e-24!94;UBERON:0001016!1.79e-24!94;UBERON:0003075!1.39e-22!86;UBERON:0007284!1.39e-22!86;UBERON:0000153!1.79e-20!129;UBERON:0007811!1.79e-20!129;UBERON:0000033!2.02e-20!123;UBERON:0000924!1.21e-17!173;UBERON:0006601!1.21e-17!173;UBERON:0000200!2.50e-16!6;UBERON:0004121!4.48e-15!169;UBERON:0001557!4.42e-14!19;UBERON:0007023!3.86e-13!115;UBERON:0000369!1.50e-11!4;UBERON:0002435!1.50e-11!4;UBERON:0000204!1.50e-11!4;UBERON:0010082!1.50e-11!4;UBERON:0001872!1.59e-09!5;UBERON:0005383!4.97e-09!3;UBERON:0005382!4.97e-09!3;UBERON:0000064!8.64e-09!219;UBERON:0002021!9.50e-09!5;UBERON:0002771!1.21e-08!3;UBERON:0000477!2.43e-08!286;UBERON:0001871!7.01e-08!7;UBERON:0002420!2.14e-07!9;UBERON:0007245!2.14e-07!9;UBERON:0010009!2.14e-07!9;UBERON:0010011!2.14e-07!9;UBERON:0000454!2.14e-07!9;UBERON:0001873!6.48e-07!2;UBERON:0010122!6.48e-07!2;UBERON:0001870!6.86e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.47e-110;9!UBERON:0001557;1.47e-110;9!UBERON:0000072;1.61e-24;37!UBERON:0000065;1.08e-20;44!UBERON:0001004;6.57e-11;65!UBERON:0001873;1.99e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.57e-110,9;UBERON:0001557,3.47e-64,19;UBERON:0008947,1.68e-25,38;UBERON:0003258,1.68e-25,38;UBERON:0000072,2.37e-25,47;UBERON:0000065,6.35e-22,54;UBERON:0001004,1.09e-15,74;UBERON:0001041,3.62e-13,87;UBERON:0004921,2.70e-09,118;UBERON:0011216,4.85e-09,223;UBERON:0001873,1.87e-07,2;UBERON:0010122,1.87e-07,2;UBERON:0001007,2.43e-07,145;UBERON:0001555,2.43e-07,145;UBERON:0007026,2.43e-07,145 | |||
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|short_description=p9@PCDH10 | |||
}} |
Revision as of 02:24, 13 September 2013
Short description: | p9@PCDH10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_PCDH10_5end |
Coexpression cluster: | C2776_NK_Hep2_plasma_medial_neuroblastoma_caudate_frontal |
Association with transcript: | 53bp_to_ENST00000511112_5end |
EntrezGene: | PCDH10 |
HGNC: | 13404 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 3.08e-14 | 1 |
immature NK T cell | 3.08e-14 | 1 |
effector T cell | 3.08e-14 | 1 |
mature NK T cell | 3.08e-14 | 1 |
immature NK T cell stage IV | 3.08e-14 | 1 |
immature NK T cell stage I | 3.08e-14 | 1 |
immature NK T cell stage II | 3.08e-14 | 1 |
immature NK T cell stage III | 3.08e-14 | 1 |
antibody secreting cell | 6.65e-14 | 1 |
plasma cell | 6.65e-14 | 1 |
plasmablast | 6.65e-14 | 1 |
thymocyte | 9.25e-08 | 2 |
double negative thymocyte | 9.25e-08 | 2 |
double-positive, alpha-beta thymocyte | 9.25e-08 | 2 |
DN4 thymocyte | 9.25e-08 | 2 |
DN1 thymic pro-T cell | 9.25e-08 | 2 |
DN2 thymocyte | 9.25e-08 | 2 |
DN3 thymocyte | 9.25e-08 | 2 |
immature single positive thymocyte | 9.25e-08 | 2 |
early T lineage precursor | 9.25e-08 | 2 |
mature B cell | 1.36e-07 | 2 |
pre-B-II cell | 1.36e-07 | 2 |
transitional stage B cell | 1.36e-07 | 2 |
small pre-B-II cell | 1.36e-07 | 2 |
immature B cell | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.57e-110 | 9 |
upper respiratory tract | 3.47e-64 | 19 |
respiratory primordium | 1.68e-25 | 38 |
endoderm of foregut | 1.68e-25 | 38 |
segment of respiratory tract | 2.37e-25 | 47 |
respiratory tract | 6.35e-22 | 54 |
respiratory system | 1.09e-15 | 74 |
foregut | 3.62e-13 | 87 |
subdivision of digestive tract | 2.70e-09 | 118 |
organ system subdivision | 4.85e-09 | 223 |
caudate nucleus | 1.87e-07 | 2 |
future caudate nucleus | 1.87e-07 | 2 |
digestive system | 2.43e-07 | 145 |
digestive tract | 2.43e-07 | 145 |
primitive gut | 2.43e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.42e-13 | 1 |
cell type cancer | 3.85e-09 | 143 |
carcinoma | 1.68e-08 | 106 |
mesenchymal cell neoplasm | 1.99e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.