FFCP PHASE1:Hg19::chr4:1164305..1164316,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C574|description=CAGE_peak_at_chr4:1164305..1164316,-|id=chr4:1164305..1164316,-|ontology_enrichment_celltype=CL:0000048!1.23e-12!430;CL:0000723!3.35e-12!436;CL:0000034!1.21e-11!444;CL:0002334!7.72e-11!12;CL:0000136!1.42e-08!15;CL:0000187!1.63e-08!54;CL:0000055!1.66e-08!180;CL:0002615!5.58e-08!3;CL:0002622!5.84e-08!3;CL:0000680!7.72e-08!57;CL:0000056!7.72e-08!57;CL:0000355!7.72e-08!57;CL:0002504!1.51e-07!3;CL:1000279!1.51e-07!3;CL:1000280!1.51e-07!3;CL:0000057!1.64e-07!75;CL:0000183!1.98e-07!59;CL:0002579!2.46e-07!3;CL:0000393!3.09e-07!60;CL:0000211!3.09e-07!60;CL:0000134!5.61e-07!358|ontology_enrichment_celltype_v019=CL:0002622;4.13e-16;3!CL:0002615;1.53e-15;3!CL:0002554;4.96e-07;2!CL:0002561;4.96e-07;2!CL:1000487;4.96e-07;2!CL:0002598;9.01e-07;2!CL:0002600;9.01e-07;2|ontology_enrichment_celltype_v019_2=CL:0002622,3.98e-16,3;CL:0002615,1.53e-15,3;CL:0002561,4.56e-07,2;CL:0002554,4.83e-07,2;CL:1000487,5.41e-07,2;CL:0002600,7.20e-07,2;CL:0002598,8.06e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003688!1.21e-13!6;UBERON:0002358!1.21e-13!6;UBERON:0003684!1.21e-13!6;UBERON:0001178!1.21e-13!6;UBERON:0004290!3.95e-09!70;UBERON:0000486!9.63e-09!82;UBERON:0004457!1.62e-08!12;UBERON:0000042!1.62e-08!12;UBERON:0002100!5.73e-08!216;UBERON:0001134!6.04e-08!61;UBERON:0002036!6.04e-08!61;UBERON:0003082!6.04e-08!61;UBERON:0002385!1.50e-07!63;UBERON:0001015!1.50e-07!63;UBERON:0000383!1.50e-07!63;UBERON:0000914!7.01e-07!83;UBERON:0002329!7.01e-07!83;UBERON:0003077!7.01e-07!83;UBERON:0003059!7.01e-07!83;UBERON:0007282!7.01e-07!83;UBERON:0009618!7.01e-07!83;UBERON:0007285!7.01e-07!83|ontology_enrichment_uberon_v019=UBERON:0002367;6.76e-10;11!UBERON:0010147;6.76e-10;11!UBERON:0003937;4.09e-09;12!UBERON:0005399;4.09e-09;12!UBERON:0003688;3.13e-08;6!UBERON:0002358;3.13e-08;6!UBERON:0003684;3.13e-08;6!UBERON:0001178;3.13e-08;6!UBERON:0005933;4.96e-07;2!UBERON:0005942;4.96e-07;2!UBERON:0005932;4.96e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002367,6.97e-10,11;UBERON:0010147,6.97e-10,11;UBERON:0009846,6.97e-10,11;UBERON:0003353,6.97e-10,11;UBERON:0004902,6.97e-10,11;UBERON:0003820,6.97e-10,11;UBERON:0009847,6.97e-10,11;UBERON:0003937,4.21e-09,12;UBERON:0005399,4.21e-09,12;UBERON:0003688,3.13e-08,6;UBERON:0002358,3.13e-08,6;UBERON:0003684,3.13e-08,6;UBERON:0001178,3.13e-08,6;UBERON:0000162,7.15e-08,14;UBERON:0001353,7.15e-08,14;UBERON:0000163,7.15e-08,14;UBERON:0006866,7.15e-08,14;UBERON:0000164,7.15e-08,14;UBERON:0000931,7.15e-08,14;UBERON:0004122,2.23e-07,15;UBERON:0005933,4.56e-07,2;UBERON:0005942,4.56e-07,2;UBERON:0005932,4.56e-07,2|phase1_expression=0.908391896352783,0.214100523890983,0.422863212287913,1.0007329835313,1.78784437770915,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0.151357427644931,0,0,0,0.570471821544449,0.298897361103602,0,0.161872944368132,0,0,0,0,1.18800285728205,0.247266929278557,0,3.59309070908119,0,0,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0.845302752556,1.32969058292435,0,0,0,0,0.285955987316295,2.17048642156577,0.823240336780769,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0.496215615637554,0,1.12264037773229,0.256278298511402,0.511707249066704,0.482561763430822,0,0,0.355123450626254,0,0.519254429183621,0.232420756919918,0,0,0,0.229628896329213,3.27764102412091,2.49136388422906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0.255897791311334,1.28381696410176,0,0,0.179872457583315,0.54907405947211,2.00281083987667,0,0,0,0.975267478179181,0,0,0,3.11091950298168,0,0,0,0,1.73632660280006,0.655894752046633,0,0,0,0.286822704408103,0.0982490410131212,0,0.709522128141196,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C574 | |||
|description=CAGE_peak_at_chr4:1164305..1164316,- | |||
|id=chr4:1164305..1164316,- | |||
|ontology_enrichment_celltype=CL:0000048!1.23e-12!430;CL:0000723!3.35e-12!436;CL:0000034!1.21e-11!444;CL:0002334!7.72e-11!12;CL:0000136!1.42e-08!15;CL:0000187!1.63e-08!54;CL:0000055!1.66e-08!180;CL:0002615!5.58e-08!3;CL:0002622!5.84e-08!3;CL:0000680!7.72e-08!57;CL:0000056!7.72e-08!57;CL:0000355!7.72e-08!57;CL:0002504!1.51e-07!3;CL:1000279!1.51e-07!3;CL:1000280!1.51e-07!3;CL:0000057!1.64e-07!75;CL:0000183!1.98e-07!59;CL:0002579!2.46e-07!3;CL:0000393!3.09e-07!60;CL:0000211!3.09e-07!60;CL:0000134!5.61e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002622;4.13e-16;3!CL:0002615;1.53e-15;3!CL:0002554;4.96e-07;2!CL:0002561;4.96e-07;2!CL:1000487;4.96e-07;2!CL:0002598;9.01e-07;2!CL:0002600;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,3.98e-16,3;CL:0002615,1.53e-15,3;CL:0002561,4.56e-07,2;CL:0002554,4.83e-07,2;CL:1000487,5.41e-07,2;CL:0002600,7.20e-07,2;CL:0002598,8.06e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!1.21e-13!6;UBERON:0002358!1.21e-13!6;UBERON:0003684!1.21e-13!6;UBERON:0001178!1.21e-13!6;UBERON:0004290!3.95e-09!70;UBERON:0000486!9.63e-09!82;UBERON:0004457!1.62e-08!12;UBERON:0000042!1.62e-08!12;UBERON:0002100!5.73e-08!216;UBERON:0001134!6.04e-08!61;UBERON:0002036!6.04e-08!61;UBERON:0003082!6.04e-08!61;UBERON:0002385!1.50e-07!63;UBERON:0001015!1.50e-07!63;UBERON:0000383!1.50e-07!63;UBERON:0000914!7.01e-07!83;UBERON:0002329!7.01e-07!83;UBERON:0003077!7.01e-07!83;UBERON:0003059!7.01e-07!83;UBERON:0007282!7.01e-07!83;UBERON:0009618!7.01e-07!83;UBERON:0007285!7.01e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0002367;6.76e-10;11!UBERON:0010147;6.76e-10;11!UBERON:0003937;4.09e-09;12!UBERON:0005399;4.09e-09;12!UBERON:0003688;3.13e-08;6!UBERON:0002358;3.13e-08;6!UBERON:0003684;3.13e-08;6!UBERON:0001178;3.13e-08;6!UBERON:0005933;4.96e-07;2!UBERON:0005942;4.96e-07;2!UBERON:0005932;4.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002367,6.97e-10,11;UBERON:0010147,6.97e-10,11;UBERON:0009846,6.97e-10,11;UBERON:0003353,6.97e-10,11;UBERON:0004902,6.97e-10,11;UBERON:0003820,6.97e-10,11;UBERON:0009847,6.97e-10,11;UBERON:0003937,4.21e-09,12;UBERON:0005399,4.21e-09,12;UBERON:0003688,3.13e-08,6;UBERON:0002358,3.13e-08,6;UBERON:0003684,3.13e-08,6;UBERON:0001178,3.13e-08,6;UBERON:0000162,7.15e-08,14;UBERON:0001353,7.15e-08,14;UBERON:0000163,7.15e-08,14;UBERON:0006866,7.15e-08,14;UBERON:0000164,7.15e-08,14;UBERON:0000931,7.15e-08,14;UBERON:0004122,2.23e-07,15;UBERON:0005933,4.56e-07,2;UBERON:0005942,4.56e-07,2;UBERON:0005932,4.56e-07,2 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.422863212287913,1.0007329835313,1.78784437770915,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0.151357427644931,0,0,0,0.570471821544449,0.298897361103602,0,0.161872944368132,0,0,0,0,1.18800285728205,0.247266929278557,0,3.59309070908119,0,0,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0.845302752556,1.32969058292435,0,0,0,0,0.285955987316295,2.17048642156577,0.823240336780769,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0.496215615637554,0,1.12264037773229,0.256278298511402,0.511707249066704,0.482561763430822,0,0,0.355123450626254,0,0.519254429183621,0.232420756919918,0,0,0,0.229628896329213,3.27764102412091,2.49136388422906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0.255897791311334,1.28381696410176,0,0,0.179872457583315,0.54907405947211,2.00281083987667,0,0,0,0.975267478179181,0,0,0,3.11091950298168,0,0,0,0,1.73632660280006,0.655894752046633,0,0,0,0.286822704408103,0.0982490410131212,0,0.709522128141196,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10961172300523,0,0.50313580350515,0,0,1.20984739010591,0,0,0.159296767163702,0.449803112163605,0,0,0,1.04349012362347,0.150257608997218,0,0,0.181848659202559,0,0.464033759878494,0.796191777397232,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p@chr4:1164305..1164316,- | |||
}} |
Revision as of 02:09, 13 September 2013
Short description: | p@chr4:1164305..1164316, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:1164305..1164316, - |
Coexpression cluster: | C574_Mesenchymal_Fibroblast_Smooth_Prostate_Adipocyte_Hair_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 3.98e-16 | 3 |
adipocyte of omentum tissue | 1.53e-15 | 3 |
outer root sheath cell | 4.56e-07 | 2 |
fibroblast of lymphatic vessel | 4.83e-07 | 2 |
smooth muscle cell of prostate | 5.41e-07 | 2 |
smooth muscle cell of trachea | 7.20e-07 | 2 |
bronchial smooth muscle cell | 8.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
prostate gland | 6.97e-10 | 11 |
male accessory sex gland | 6.97e-10 | 11 |
embryonic cloacal epithelium | 6.97e-10 | 11 |
epithelium of hindgut | 6.97e-10 | 11 |
urogenital sinus epithelium | 6.97e-10 | 11 |
prostate bud | 6.97e-10 | 11 |
prostate field | 6.97e-10 | 11 |
sex gland | 4.21e-09 | 12 |
male reproductive gland | 4.21e-09 | 12 |
omentum | 3.13e-08 | 6 |
peritoneum | 3.13e-08 | 6 |
abdominal cavity | 3.13e-08 | 6 |
visceral peritoneum | 3.13e-08 | 6 |
cloaca | 7.15e-08 | 14 |
anal region | 7.15e-08 | 14 |
embryonic cloaca | 7.15e-08 | 14 |
terminal part of digestive tract | 7.15e-08 | 14 |
primitive urogenital sinus | 7.15e-08 | 14 |
proctodeum | 7.15e-08 | 14 |
genitourinary system | 2.23e-07 | 15 |
hair root sheath | 4.56e-07 | 2 |
hair outer root sheath | 4.56e-07 | 2 |
bulb of hair follicle | 4.56e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.