FFCP PHASE1:Hg19::chr4:108745711..108745726,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=166929|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28395|TSSclassifier=S|UniProt=Q8NHU3|association_with_transcript=0bp_to_ENST00000394684,ENST00000506462,NM_001136258,uc003hyl.3_5end|coexpression_cluster_id=C0|description=CAGE_peak_2_at_SGMS2_5end|id=chr4:108745711..108745726,+|ontology_enrichment_celltype=CL:0002057!5.84e-21!42;CL:0000860!2.85e-19!45;CL:0000557!3.84e-17!71;CL:0002009!3.85e-16!65;CL:0002194!5.60e-15!63;CL:0000576!5.60e-15!63;CL:0000040!5.60e-15!63;CL:0000559!5.60e-15!63;CL:0000839!1.40e-14!70;CL:0000766!5.89e-14!76|ontology_enrichment_celltype_v019=CL:0000860;1.31e-21;33!CL:0002057;1.31e-21;33!CL:0000473;1.10e-17;39!CL:0000234;1.10e-17;39!CL:0000576;7.53e-13;48!CL:0000766;1.12e-08;69|ontology_enrichment_celltype_v019_2=CL:0000860,3.02e-22,42;CL:0002057,3.02e-22,42;CL:0000473,1.06e-21,48;CL:0000234,1.06e-21,48;CL:0000557,6.35e-20,67;CL:0002009,6.34e-19,61;CL:0002194,1.39e-17,59;CL:0000576,1.39e-17,59;CL:0000040,1.39e-17,59;CL:0000559,1.39e-17,59;CL:0000839,2.30e-17,66;CL:0000766,2.61e-16,72;CL:0000134,3.31e-07,354;CL:0000048,3.49e-07,427;CL:0000763,3.61e-07,108;CL:0000049,3.61e-07,108;CL:0000723,8.30e-07,433|ontology_enrichment_development_v019=CL:0002057;5.49e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!4.00e-26!448;UBERON:0004120!4.00e-26!448;UBERON:0006603!4.00e-26!448;UBERON:0002204!9.92e-17!167;UBERON:0001474!3.08e-15!86;UBERON:0004765!4.34e-15!101;UBERON:0001434!4.34e-15!101;UBERON:0000480!1.26e-14!626;UBERON:0000467!1.70e-14!625;UBERON:0000468!2.08e-14!659;UBERON:0002371!5.91e-14!80;UBERON:0003081!5.14e-13!216;UBERON:0002390!1.47e-11!102;UBERON:0003061!1.47e-11!102;UBERON:0002193!2.89e-11!112;UBERON:0000062!6.95e-11!511;UBERON:0002050!1.32e-10!605;UBERON:0005423!1.32e-10!605;UBERON:0000923!1.47e-10!604;UBERON:0005291!1.47e-10!604;UBERON:0006598!1.47e-10!604;UBERON:0002532!1.47e-10!604;UBERON:0000922!4.50e-10!612;UBERON:0002405!2.32e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.61e-18,82;UBERON:0000926,8.21e-18,315;UBERON:0004120,8.21e-18,315;UBERON:0006603,8.21e-18,315;UBERON:0001434,2.29e-16,100;UBERON:0002371,2.46e-16,76;UBERON:0004765,2.95e-16,90;UBERON:0002204,1.37e-15,167;UBERON:0003081,7.16e-15,203;UBERON:0002390,1.15e-13,98;UBERON:0003061,1.15e-13,98;UBERON:0002193,5.40e-13,108;UBERON:0002405,5.57e-12,93|phase1_expression=5.81370813665781,2.35510576280081,8.3163098416623,2.00146596706261,3.12872766099101,7.85104671690332,2.53299878168311,0.631719873426831,0.783556884599516,0.982935746006035,0,0.436882744260345,0.527533956456907,0.495065411840187,0.331397375727916,2.6893005858071,1.20538905604795,0,2.43966399395253,0.369363174230364,0.408001382488506,0,0.286235987131057,0.684372125364421,0.753255837568817,0,0,0,1.57345710739562,3.83829398097213,4.79929982279836,0.919421224478927,0.30120591877825,0.369754010166788,0,0,1.17440175733939,12.7418943962332,6.01633342410425,8.89744569934992,1.34349284543955,1.29557466407592,1.80302897343931,2.76256653681173,7.17964293008738,7.5201058968223,7.90258725479328,18.913722849004,22.9182714462377,14.3846196161075,25.1037492398519,31.4521365751818,47.91964962239,47.7658665852031,48.753535173963,4.51781614902251,9.5517152520246,13.4834090667051,21.1197885735923,59.6927990361534,40.9175760511386,4.61791820261403,13.1646014030277,11.9342930149154,33.6642716809157,49.9298997728203,42.3519129316991,17.587406567972,26.5956288394303,43.2205800963182,41.1671661790691,99.4349617166425,95.5716410071471,3.16882929467913,1.06302149982522,2.51590374610051,5.39177429503177,4.6554836780867,8.03627933485401,0.855038231223746,0.59675003159727,1.0959849225878,0,0,0,0.853460445133014,0,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,5.60508562981536,1.31692042387539,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20460095262218,0.639933055772092,0,1.18388626022008,0,0,0,0,2.43806866313962,2.01210257911091,3.19656404608826,2.53007406669196,3.00802746381534,2.75208386025565,0,0.486634870302636,1.03988298880475,1.55210578223795,1.14185221401064,2.0956652079634,0,0,1.29818957461873,1.91542711029194,2.12732736830184,1.19245312152671,0,0,2.18638648103376,0,1.04142150482278,3.95715559346807,1.25849830862972,1.37559020970034,1.04497483268405,1.29208379584664,2.13459757612026,1.67360306382335,0.402829317109147,2.28081631715554,0.24406205754817,3.67663080345869,0,3.12549048994279,1.12264686313085,3.49095589498299,0,1.89853131913626,1.64881569537367,0,0,0,6.95760732373446,4.17880688493113,4.50191214764944,7.45775213946916,3.54668382198357,3.36406560085384,0,0.98667019366864,5.29058760179603,1.88594940897563,3.59616186849609,1.21085942115945,1.72852777344,0.937285727335186,2.80944069147288,1.1409436430889,0.597794722207204,0.469737994575059,0.485618833104395,0.280901613404497,1.63323337003915,0.368502951935304,1.1365835929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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=166929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |||
|TSSclassifier=S | |||
|UniProt=Q8NHU3 | |||
|association_with_transcript=0bp_to_ENST00000394684,ENST00000506462,NM_001136258,uc003hyl.3_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_SGMS2_5end | |||
|id=chr4:108745711..108745726,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.84e-21!42;CL:0000860!2.85e-19!45;CL:0000557!3.84e-17!71;CL:0002009!3.85e-16!65;CL:0002194!5.60e-15!63;CL:0000576!5.60e-15!63;CL:0000040!5.60e-15!63;CL:0000559!5.60e-15!63;CL:0000839!1.40e-14!70;CL:0000766!5.89e-14!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.31e-21;33!CL:0002057;1.31e-21;33!CL:0000473;1.10e-17;39!CL:0000234;1.10e-17;39!CL:0000576;7.53e-13;48!CL:0000766;1.12e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.02e-22,42;CL:0002057,3.02e-22,42;CL:0000473,1.06e-21,48;CL:0000234,1.06e-21,48;CL:0000557,6.35e-20,67;CL:0002009,6.34e-19,61;CL:0002194,1.39e-17,59;CL:0000576,1.39e-17,59;CL:0000040,1.39e-17,59;CL:0000559,1.39e-17,59;CL:0000839,2.30e-17,66;CL:0000766,2.61e-16,72;CL:0000134,3.31e-07,354;CL:0000048,3.49e-07,427;CL:0000763,3.61e-07,108;CL:0000049,3.61e-07,108;CL:0000723,8.30e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;5.49e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.00e-26!448;UBERON:0004120!4.00e-26!448;UBERON:0006603!4.00e-26!448;UBERON:0002204!9.92e-17!167;UBERON:0001474!3.08e-15!86;UBERON:0004765!4.34e-15!101;UBERON:0001434!4.34e-15!101;UBERON:0000480!1.26e-14!626;UBERON:0000467!1.70e-14!625;UBERON:0000468!2.08e-14!659;UBERON:0002371!5.91e-14!80;UBERON:0003081!5.14e-13!216;UBERON:0002390!1.47e-11!102;UBERON:0003061!1.47e-11!102;UBERON:0002193!2.89e-11!112;UBERON:0000062!6.95e-11!511;UBERON:0002050!1.32e-10!605;UBERON:0005423!1.32e-10!605;UBERON:0000923!1.47e-10!604;UBERON:0005291!1.47e-10!604;UBERON:0006598!1.47e-10!604;UBERON:0002532!1.47e-10!604;UBERON:0000922!4.50e-10!612;UBERON:0002405!2.32e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.61e-18,82;UBERON:0000926,8.21e-18,315;UBERON:0004120,8.21e-18,315;UBERON:0006603,8.21e-18,315;UBERON:0001434,2.29e-16,100;UBERON:0002371,2.46e-16,76;UBERON:0004765,2.95e-16,90;UBERON:0002204,1.37e-15,167;UBERON:0003081,7.16e-15,203;UBERON:0002390,1.15e-13,98;UBERON:0003061,1.15e-13,98;UBERON:0002193,5.40e-13,108;UBERON:0002405,5.57e-12,93 | |||
|phase1_expression=5.81370813665781,2.35510576280081,8.3163098416623,2.00146596706261,3.12872766099101,7.85104671690332,2.53299878168311,0.631719873426831,0.783556884599516,0.982935746006035,0,0.436882744260345,0.527533956456907,0.495065411840187,0.331397375727916,2.6893005858071,1.20538905604795,0,2.43966399395253,0.369363174230364,0.408001382488506,0,0.286235987131057,0.684372125364421,0.753255837568817,0,0,0,1.57345710739562,3.83829398097213,4.79929982279836,0.919421224478927,0.30120591877825,0.369754010166788,0,0,1.17440175733939,12.7418943962332,6.01633342410425,8.89744569934992,1.34349284543955,1.29557466407592,1.80302897343931,2.76256653681173,7.17964293008738,7.5201058968223,7.90258725479328,18.913722849004,22.9182714462377,14.3846196161075,25.1037492398519,31.4521365751818,47.91964962239,47.7658665852031,48.753535173963,4.51781614902251,9.5517152520246,13.4834090667051,21.1197885735923,59.6927990361534,40.9175760511386,4.61791820261403,13.1646014030277,11.9342930149154,33.6642716809157,49.9298997728203,42.3519129316991,17.587406567972,26.5956288394303,43.2205800963182,41.1671661790691,99.4349617166425,95.5716410071471,3.16882929467913,1.06302149982522,2.51590374610051,5.39177429503177,4.6554836780867,8.03627933485401,0.855038231223746,0.59675003159727,1.0959849225878,0,0,0,0.853460445133014,0,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,5.60508562981536,1.31692042387539,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20460095262218,0.639933055772092,0,1.18388626022008,0,0,0,0,2.43806866313962,2.01210257911091,3.19656404608826,2.53007406669196,3.00802746381534,2.75208386025565,0,0.486634870302636,1.03988298880475,1.55210578223795,1.14185221401064,2.0956652079634,0,0,1.29818957461873,1.91542711029194,2.12732736830184,1.19245312152671,0,0,2.18638648103376,0,1.04142150482278,3.95715559346807,1.25849830862972,1.37559020970034,1.04497483268405,1.29208379584664,2.13459757612026,1.67360306382335,0.402829317109147,2.28081631715554,0.24406205754817,3.67663080345869,0,3.12549048994279,1.12264686313085,3.49095589498299,0,1.89853131913626,1.64881569537367,0,0,0,6.95760732373446,4.17880688493113,4.50191214764944,7.45775213946916,3.54668382198357,3.36406560085384,0,0.98667019366864,5.29058760179603,1.88594940897563,3.59616186849609,1.21085942115945,1.72852777344,0.937285727335186,2.80944069147288,1.1409436430889,0.597794722207204,0.469737994575059,0.485618833104395,0.280901613404497,1.63323337003915,0.368502951935304,1.13658359293342,4.75201142912821,3.21447008062124,1.82032272387605,0,1.0100166837244,0.250237039743928,3.60183350129438,2.19488810440419,1.83892677479412,3.30523729594513,2.49550802952046,2.69084453533293,2.77624605464138,1.69545520927649,0.900273288253207,1.54578793857658,2.31876486041066,2.23340227597908,0.843881661206331,0.292311015483596,1.26216887122057,2.20919756741518,7.27407255684654,2.4850671476163,0.806016785821122,0.67824236924195,1.54608682530637,3.27295344709002,2.29443676311203,0.243947412259191,0.795178609928912,0.116193942869518,0.207322110030741,0.252320850875628,1.45990943630332,0,1.92972281457866,0,2.78620756819187,3.60939740834793,0.946454400318751,0.337169380156203,0.482022059766964,0.330881918197182,1.30727666455444,1.42362371466658,0.808987848960987,1.17732879075208,1.15424147083917,0,0,1.2347220339942,1.47008711385542,6.33775174109154,5.89696330006576,2.36315962672562,0,0.737930631258681,1.3725424823882,1.09750285408626,0,1.3068766413512,1.20364978706088,0,0,0,0.811512834825538,4.10930429825376,1.29929802984966,0.925971025153221,1.33177906564219,0,0,1.47730203652438,3.04205544681009,2.0808362720422,1.87467667973554,3.52762469217605,2.1266264586358,3.85101647622248,1.45316969256981,1.15014803749563,34.486426652716,0.264145302039678,5.1832028885193,2.73827911492227,4.92345490362882,0.571481048629521,0.381988425558278,0,0,0.616964956219941,0,0.571652865261156,0.224262168690721,0.43596006883328,0.80672114403045,5.8172272091,0,0.845302752556,5.85063856486715,3.12022310734098,0.257207374262142,0,0.266422179016099,1.42977993658148,0.542621605391443,0.823240336780769,2.60588947434988,0.355391948742546,0.791951872933429,6.33022691825131,2.61460037580088,4.49878460319257,0,3.51579964002488,2.10833939483032,2.87549826589899,3.44585807502342,1.42636905040718,4.77778312003011,1.43833425785268,4.1184021545176,0,0.394061520403854,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0,0,0.749007023947182,0,0.414415513436035,1.2269149171914,0,0.542530047399471,5.61521326133179,4.81758269752337,5.04647728108591,8.08275763449721,1.80567659836631,2.27407504055985,0,1.32845119707087,1.84369168541703,1.91143951829782,0,0,2.27444828735176,1.07857100409308,2.56146138728266,1.21251028578504,0,0.907170879989041,4.96215615637554,4.910783145218,2.52594084989766,5.76626171650654,5.62877973973374,3.21707842287215,2.96836132889982,0.771048469013278,1.9531789784444,1.06765302817952,1.55776328755086,1.39452454151951,0.362578348774867,1.40354529212299,0.828728900423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| |||
|short_description=p2@SGMS2 | |||
}} |
Revision as of 01:58, 13 September 2013
Short description: | p2@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SGMS2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000394684, ENST00000506462, NM_001136258, uc003hyl.3_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | Q8NHU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.02e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.02e-22 | 42 |
defensive cell | 1.06e-21 | 48 |
phagocyte | 1.06e-21 | 48 |
granulocyte monocyte progenitor cell | 6.35e-20 | 67 |
macrophage dendritic cell progenitor | 6.34e-19 | 61 |
monopoietic cell | 1.39e-17 | 59 |
monocyte | 1.39e-17 | 59 |
monoblast | 1.39e-17 | 59 |
promonocyte | 1.39e-17 | 59 |
myeloid lineage restricted progenitor cell | 2.30e-17 | 66 |
myeloid leukocyte | 2.61e-16 | 72 |
mesenchymal cell | 3.31e-07 | 354 |
multi fate stem cell | 3.49e-07 | 427 |
myeloid cell | 3.61e-07 | 108 |
common myeloid progenitor | 3.61e-07 | 108 |
somatic stem cell | 8.30e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone element | 5.61e-18 | 82 |
mesoderm | 8.21e-18 | 315 |
mesoderm-derived structure | 8.21e-18 | 315 |
presumptive mesoderm | 8.21e-18 | 315 |
skeletal system | 2.29e-16 | 100 |
bone marrow | 2.46e-16 | 76 |
skeletal element | 2.95e-16 | 90 |
musculoskeletal system | 1.37e-15 | 167 |
lateral plate mesoderm | 7.16e-15 | 203 |
hematopoietic system | 1.15e-13 | 98 |
blood island | 1.15e-13 | 98 |
hemolymphoid system | 5.40e-13 | 108 |
immune system | 5.57e-12 | 93 |
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