FFCP PHASE1:Hg19::chr3:195943421..195943430,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=200931|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=15bp_to_ENST00000472653_5end|coexpression_cluster_id=C5|description=CAGE_peak_6_at_OSTalpha_5end|id=chr3:195943421..195943430,+|ontology_enrichment_celltype=CL:0000181!1.41e-14!12;CL:0000417!1.41e-14!12;CL:0000668!1.41e-14!12;CL:0000414!1.41e-14!12;CL:0000412!1.41e-14!12;CL:0000182!1.41e-14!12|ontology_enrichment_celltype_v019=CL:0000182;1.53e-10;12|ontology_enrichment_celltype_v019_2=CL:0000182,1.53e-10,12|ontology_enrichment_development_v019=UBERON:0005425;3.16e-29;1!UBERON:0004161;2.55e-11;11!UBERON:0003056;1.09e-10;3!UBERON:0009497;9.94e-10;13|ontology_enrichment_disease=DOID:0050619!1.88e-08!1;DOID:1357!1.88e-08!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!1.85e-20!26;UBERON:0002107!1.49e-17!19;UBERON:0006925!1.49e-17!19;UBERON:0008836!1.49e-17!19;UBERON:0009497!4.66e-17!25;UBERON:0000015!4.66e-17!25;UBERON:0002423!4.66e-17!25;UBERON:0006235!4.66e-17!25;UBERON:0004161!4.66e-17!25;UBERON:0008835!4.77e-15!22;UBERON:0003894!4.77e-15!22;UBERON:0002368!7.75e-15!35;UBERON:0009854!2.34e-14!23;UBERON:0003929!9.44e-14!54;UBERON:0005172!2.13e-13!55;UBERON:0005173!2.13e-13!55;UBERON:0007499!3.84e-13!25;UBERON:0009856!1.33e-12!26;UBERON:0004921!3.97e-12!129;UBERON:0004185!3.97e-12!129;UBERON:0002417!6.89e-12!61;UBERON:0000916!6.89e-12!61;UBERON:0000949!3.17e-11!45;UBERON:0001007!6.34e-11!155;UBERON:0001555!6.34e-11!155;UBERON:0007026!6.34e-11!155;UBERON:0002365!1.96e-10!31;UBERON:0002330!1.96e-10!31;UBERON:0002530!3.33e-10!59;UBERON:0005911!4.81e-10!82;UBERON:0004119!9.80e-10!169;UBERON:0000925!9.80e-10!169;UBERON:0006595!9.80e-10!169;UBERON:0000941!1.41e-08!1;UBERON:0004904!1.41e-08!1;UBERON:0002464!1.41e-08!1;UBERON:0001021!1.41e-08!1;UBERON:0001785!1.41e-08!1;UBERON:0005177!1.59e-08!107;UBERON:0001764!1.88e-08!1;UBERON:0001825!1.88e-08!1;UBERON:0001301!2.69e-08!1;UBERON:0000466!3.94e-08!126;UBERON:0001041!4.96e-08!98;UBERON:0009569!6.04e-08!113;UBERON:0000077!8.02e-08!130;UBERON:0002370!1.16e-07!4;UBERON:0005058!1.16e-07!4;UBERON:0009113!1.16e-07!4;UBERON:0003295!1.16e-07!4;UBERON:0005562!1.16e-07!4|ontology_enrichment_uberon_v019=UBERON:0000941;3.16e-29;1!UBERON:0001785;3.16e-29;1!UBERON:0002464;3.16e-29;1!UBERON:0004904;3.16e-29;1!UBERON:0001021;3.16e-29;1!UBERON:0002107;2.05e-24;19!UBERON:0006925;2.05e-24;19!UBERON:0002423;1.04e-18;25!UBERON:0003714;2.37e-15;2!UBERON:0005162;2.37e-15;2!UBERON:0000122;2.37e-15;2!UBERON:0002365;4.77e-15;31!UBERON:0002330;4.77e-15;31!UBERON:0002368;1.14e-12;33!UBERON:0000949;3.44e-09;43!UBERON:0005172;3.53e-07;52!UBERON:0005173;3.53e-07;52!UBERON:0002108;6.39e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.16e-29,1;UBERON:0001785,3.16e-29,1;UBERON:0002464,3.16e-29,1;UBERON:0004904,3.16e-29,1;UBERON:0001021,3.16e-29,1;UBERON:0003902,3.16e-29,1;UBERON:0005425,3.16e-29,1;UBERON:0002107,2.05e-24,19;UBERON:0006925,2.05e-24,19;UBERON:0008836,2.05e-24,19;UBERON:0008835,3.56e-21,22;UBERON:0003894,3.56e-21,22;UBERON:0009854,2.78e-20,23;UBERON:0007499,1.04e-18,25;UBERON:0009497,1.04e-18,25;UBERON:0000015,1.04e-18,25;UBERON:0002423,1.04e-18,25;UBERON:0006235,1.04e-18,25;UBERON:0004161,1.04e-18,25;UBERON:0009856,5.17e-18,26;UBERON:0003714,2.37e-15,2;UBERON:0005162,2.37e-15,2;UBERON:0000122,2.37e-15,2;UBERON:0002365,3.35e-15,31;UBERON:0002330,3.35e-15,31;UBERON:0002368,1.58e-13,35;UBERON:0000949,1.24e-10,45;UBERON:0003929,6.15e-09,54;UBERON:0005172,6.15e-09,54;UBERON:0005173,6.15e-09,54;UBERON:0001781,2.43e-08,4;UBERON:0002530,3.24e-08,59;UBERON:0002417,4.37e-08,60;UBERON:0000916,4.37e-08,60;UBERON:0002108,6.77e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.07020139287323,0.982827216677626,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=200931 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=15bp_to_ENST00000472653_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_6_at_OSTalpha_5end | |||
|id=chr3:195943421..195943430,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.41e-14!12;CL:0000417!1.41e-14!12;CL:0000668!1.41e-14!12;CL:0000414!1.41e-14!12;CL:0000412!1.41e-14!12;CL:0000182!1.41e-14!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.53e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.53e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.16e-29;1!UBERON:0004161;2.55e-11;11!UBERON:0003056;1.09e-10;3!UBERON:0009497;9.94e-10;13 | |||
|ontology_enrichment_disease=DOID:0050619!1.88e-08!1;DOID:1357!1.88e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!1.85e-20!26;UBERON:0002107!1.49e-17!19;UBERON:0006925!1.49e-17!19;UBERON:0008836!1.49e-17!19;UBERON:0009497!4.66e-17!25;UBERON:0000015!4.66e-17!25;UBERON:0002423!4.66e-17!25;UBERON:0006235!4.66e-17!25;UBERON:0004161!4.66e-17!25;UBERON:0008835!4.77e-15!22;UBERON:0003894!4.77e-15!22;UBERON:0002368!7.75e-15!35;UBERON:0009854!2.34e-14!23;UBERON:0003929!9.44e-14!54;UBERON:0005172!2.13e-13!55;UBERON:0005173!2.13e-13!55;UBERON:0007499!3.84e-13!25;UBERON:0009856!1.33e-12!26;UBERON:0004921!3.97e-12!129;UBERON:0004185!3.97e-12!129;UBERON:0002417!6.89e-12!61;UBERON:0000916!6.89e-12!61;UBERON:0000949!3.17e-11!45;UBERON:0001007!6.34e-11!155;UBERON:0001555!6.34e-11!155;UBERON:0007026!6.34e-11!155;UBERON:0002365!1.96e-10!31;UBERON:0002330!1.96e-10!31;UBERON:0002530!3.33e-10!59;UBERON:0005911!4.81e-10!82;UBERON:0004119!9.80e-10!169;UBERON:0000925!9.80e-10!169;UBERON:0006595!9.80e-10!169;UBERON:0000941!1.41e-08!1;UBERON:0004904!1.41e-08!1;UBERON:0002464!1.41e-08!1;UBERON:0001021!1.41e-08!1;UBERON:0001785!1.41e-08!1;UBERON:0005177!1.59e-08!107;UBERON:0001764!1.88e-08!1;UBERON:0001825!1.88e-08!1;UBERON:0001301!2.69e-08!1;UBERON:0000466!3.94e-08!126;UBERON:0001041!4.96e-08!98;UBERON:0009569!6.04e-08!113;UBERON:0000077!8.02e-08!130;UBERON:0002370!1.16e-07!4;UBERON:0005058!1.16e-07!4;UBERON:0009113!1.16e-07!4;UBERON:0003295!1.16e-07!4;UBERON:0005562!1.16e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.16e-29;1!UBERON:0001785;3.16e-29;1!UBERON:0002464;3.16e-29;1!UBERON:0004904;3.16e-29;1!UBERON:0001021;3.16e-29;1!UBERON:0002107;2.05e-24;19!UBERON:0006925;2.05e-24;19!UBERON:0002423;1.04e-18;25!UBERON:0003714;2.37e-15;2!UBERON:0005162;2.37e-15;2!UBERON:0000122;2.37e-15;2!UBERON:0002365;4.77e-15;31!UBERON:0002330;4.77e-15;31!UBERON:0002368;1.14e-12;33!UBERON:0000949;3.44e-09;43!UBERON:0005172;3.53e-07;52!UBERON:0005173;3.53e-07;52!UBERON:0002108;6.39e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.16e-29,1;UBERON:0001785,3.16e-29,1;UBERON:0002464,3.16e-29,1;UBERON:0004904,3.16e-29,1;UBERON:0001021,3.16e-29,1;UBERON:0003902,3.16e-29,1;UBERON:0005425,3.16e-29,1;UBERON:0002107,2.05e-24,19;UBERON:0006925,2.05e-24,19;UBERON:0008836,2.05e-24,19;UBERON:0008835,3.56e-21,22;UBERON:0003894,3.56e-21,22;UBERON:0009854,2.78e-20,23;UBERON:0007499,1.04e-18,25;UBERON:0009497,1.04e-18,25;UBERON:0000015,1.04e-18,25;UBERON:0002423,1.04e-18,25;UBERON:0006235,1.04e-18,25;UBERON:0004161,1.04e-18,25;UBERON:0009856,5.17e-18,26;UBERON:0003714,2.37e-15,2;UBERON:0005162,2.37e-15,2;UBERON:0000122,2.37e-15,2;UBERON:0002365,3.35e-15,31;UBERON:0002330,3.35e-15,31;UBERON:0002368,1.58e-13,35;UBERON:0000949,1.24e-10,45;UBERON:0003929,6.15e-09,54;UBERON:0005172,6.15e-09,54;UBERON:0005173,6.15e-09,54;UBERON:0001781,2.43e-08,4;UBERON:0002530,3.24e-08,59;UBERON:0002417,4.37e-08,60;UBERON:0000916,4.37e-08,60;UBERON:0002108,6.77e-07,4 | |||
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|short_description=p6@OSTalpha | |||
}} |
Revision as of 23:32, 12 September 2013
Short description: | p6@OSTalpha |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_OSTalpha_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 15bp_to_ENST00000472653_5end |
EntrezGene: | OSTalpha |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.53e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.16e-29 | 1 |
cranial nerve | 3.16e-29 | 1 |
nerve trunk | 3.16e-29 | 1 |
nerve connecting eye with brain | 3.16e-29 | 1 |
nerve | 3.16e-29 | 1 |
retinal neural layer | 3.16e-29 | 1 |
presumptive neural retina | 3.16e-29 | 1 |
liver | 2.05e-24 | 19 |
digestive gland | 2.05e-24 | 19 |
liver bud | 2.05e-24 | 19 |
hepatic diverticulum | 3.56e-21 | 22 |
liver primordium | 3.56e-21 | 22 |
digestive tract diverticulum | 2.78e-20 | 23 |
epithelial sac | 1.04e-18 | 25 |
epithelium of foregut-midgut junction | 1.04e-18 | 25 |
anatomical boundary | 1.04e-18 | 25 |
hepatobiliary system | 1.04e-18 | 25 |
foregut-midgut junction | 1.04e-18 | 25 |
septum transversum | 1.04e-18 | 25 |
sac | 5.17e-18 | 26 |
neural tissue | 2.37e-15 | 2 |
multi cell component structure | 2.37e-15 | 2 |
neuron projection bundle | 2.37e-15 | 2 |
exocrine gland | 3.35e-15 | 31 |
exocrine system | 3.35e-15 | 31 |
endocrine gland | 1.58e-13 | 35 |
endocrine system | 1.24e-10 | 45 |
gut epithelium | 6.15e-09 | 54 |
abdomen element | 6.15e-09 | 54 |
abdominal segment element | 6.15e-09 | 54 |
layer of retina | 2.43e-08 | 4 |
gland | 3.24e-08 | 59 |
abdominal segment of trunk | 4.37e-08 | 60 |
abdomen | 4.37e-08 | 60 |
small intestine | 6.77e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.