FFCP PHASE1:Hg19::chr3:18487057..18487105,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6304|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10541|TSSclassifier=S|UniProt=C9JGL9|association_with_transcript=0bp_to_ENST00000415069_5end|coexpression_cluster_id=C712|description=CAGE_peak_4_at_SATB1_5end|id=chr3:18487057..18487105,-|ontology_enrichment_celltype=CL:0000037!7.25e-42!172;CL:0000566!7.25e-42!172;CL:0000988!4.52e-40!182;CL:0002032!2.14e-36!165;CL:0000837!2.14e-36!165;CL:0000738!1.48e-32!140;CL:0000838!1.41e-27!52;CL:0000542!9.64e-27!53;CL:0000051!9.64e-27!53;CL:0002087!1.09e-26!119;CL:0002031!8.48e-24!124;CL:0000084!4.02e-20!25;CL:0000827!4.02e-20!25;CL:0000791!7.56e-19!18;CL:0000789!7.56e-19!18;CL:0002420!7.56e-19!18;CL:0002419!7.56e-19!18;CL:0000790!7.56e-19!18;CL:0000236!5.08e-13!14;CL:0000763!5.74e-13!112;CL:0000049!5.74e-13!112;CL:0000625!1.86e-12!11;CL:0000766!1.59e-07!76;CL:0000945!1.97e-07!24;CL:0000826!1.97e-07!24;CL:0000624!2.05e-07!6|ontology_enrichment_celltype_v019=CL:0000084;6.54e-32;25!CL:0000791;3.73e-29;18!CL:0000789;3.73e-29;18!CL:0002419;3.73e-29;18!CL:0000542;1.53e-24;53!CL:0000236;1.64e-19;13!CL:0000625;6.97e-19;11!CL:0000624;7.07e-11;6!CL:0000945;5.37e-09;24!CL:0002087;6.96e-09;104!CL:0000094;3.27e-07;8!CL:0000738;4.97e-07;136|ontology_enrichment_celltype_v019_2=CL:0000838,9.97e-41,52;CL:0000542,1.03e-39,53;CL:0000051,1.03e-39,53;CL:0000037,3.68e-38,168;CL:0000988,4.10e-35,177;CL:0000084,7.52e-32,25;CL:0000827,7.52e-32,25;CL:0000738,8.44e-32,136;CL:0002032,2.99e-31,161;CL:0000837,2.99e-31,161;CL:0000791,3.92e-29,18;CL:0000789,3.92e-29,18;CL:0002420,3.92e-29,18;CL:0002419,3.92e-29,18;CL:0000790,3.92e-29,18;CL:0002087,1.80e-26,115;CL:0002031,7.28e-22,120;CL:0000625,6.37e-19,11;CL:0000236,8.20e-18,14;CL:0000624,6.79e-11,6;CL:0000945,5.68e-09,24;CL:0000826,5.68e-09,24;CL:0000134,1.14e-07,354;CL:0000094,3.20e-07,8;CL:0002320,3.41e-07,361|ontology_enrichment_development_v019=CL:0000790;3.73e-29;18!CL:0000051;1.53e-24;53|ontology_enrichment_disease=DOID:1240!8.71e-12!39;DOID:2531!4.37e-11!51;DOID:0060083!4.37e-11!51;DOID:8692!3.13e-10!31|ontology_enrichment_disease_v019=DOID:1240;5.12e-08;39!DOID:8692;1.70e-07;31!DOID:2531;6.10e-07;51!DOID:0060083;6.10e-07;51|ontology_enrichment_disease_v019_2=DOID:1240,1.71e-10,39;DOID:2531,1.17e-09,51;DOID:0060083,1.17e-09,51;DOID:8692,1.31e-07,31|ontology_enrichment_uberon=UBERON:0000178!2.03e-13!15;UBERON:0000179!2.03e-13!15;UBERON:0000463!2.03e-13!15;UBERON:0002390!1.10e-12!102;UBERON:0003061!1.10e-12!102;UBERON:0002193!1.18e-11!112;UBERON:0007023!1.52e-10!115|ontology_enrichment_uberon_v019=UBERON:0000178;1.14e-14;15!UBERON:0000179;1.14e-14;15!UBERON:0000463;1.14e-14;15!UBERON:0002390;5.17e-12;32!UBERON:0002193;4.23e-08;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.81e-15,15;UBERON:0000179,9.81e-15,15;UBERON:0000463,9.81e-15,15;UBERON:0004177,2.38e-08,7;UBERON:0005057,2.38e-08,7;UBERON:0002390,3.84e-08,98;UBERON:0003061,3.84e-08,98;UBERON:0002193,4.64e-08,108;UBERON:0002370,1.61e-07,4;UBERON:0005058,1.61e-07,4;UBERON:0009113,1.61e-07,4;UBERON:0003295,1.61e-07,4;UBERON:0005562,1.61e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11373559903575,3.0706351847777,0.928896739896456,0,0,0,0.154934401160603,0,2.93600439334847,1.10799081706375,2.4065333696417,0.868043482863407,0,2.59114932815184,0.257575567634187,0.145398238779565,0.377875943688809,0,0,1.23350366406548,0,0.28769239232215,0,0,0.689491361473237,1.29096936716765,0,0.376484679085209,1.36453075028923,0,0.918251677112708,2.24650318953266,0,0,0,0,0.290209238628584,0,0,0,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0.211255286311942,0,0.209658645508376,0,0,0.16072558669708,0,0,0.365328307529268,5.27988733383968,9.28435639145624,11.5636203002262,11.0949857867292,10.4102956629363,13.2193061189531,9.25462821898807,11.4486450544244,30.7375003319102,22.3150131960957,16.8200220375101,1.32171328579026,4.48406850385229,1.05353633910031,20.6545258619525,15.3274197472174,8.42966145897988,11.5358681819568,7.82213439920617,10.4158517261641,9.74133642039557,3.67654507721073,2.65145316727353,1.77227115666897,2.16643091012012,4.61128751012431,1.8208308658383,3.94650971048823,5.25065033793112,7.24507714337631,21.3532650953367,23.5435928718948,18.8163942848958,6.57194187645884,3.44898444241729,5.84166657320471,6.83153168452658,8.28270077242652,5.85975108470777,3.8018081777935,8.73335690651082,8.83107616965487,4.99722906209383,7.10331756132051,8.21127996921047,10.0803371612366,8.29064606928873,13.3238451572175,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0.174129737299267,0.132957960518865,6.43924685624423,2.28797964312051,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1486311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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6304 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |||
|TSSclassifier=S | |||
|UniProt=C9JGL9 | |||
|association_with_transcript=0bp_to_ENST00000415069_5end | |||
|coexpression_cluster_id=C712 | |||
|description=CAGE_peak_4_at_SATB1_5end | |||
|id=chr3:18487057..18487105,- | |||
|ontology_enrichment_celltype=CL:0000037!7.25e-42!172;CL:0000566!7.25e-42!172;CL:0000988!4.52e-40!182;CL:0002032!2.14e-36!165;CL:0000837!2.14e-36!165;CL:0000738!1.48e-32!140;CL:0000838!1.41e-27!52;CL:0000542!9.64e-27!53;CL:0000051!9.64e-27!53;CL:0002087!1.09e-26!119;CL:0002031!8.48e-24!124;CL:0000084!4.02e-20!25;CL:0000827!4.02e-20!25;CL:0000791!7.56e-19!18;CL:0000789!7.56e-19!18;CL:0002420!7.56e-19!18;CL:0002419!7.56e-19!18;CL:0000790!7.56e-19!18;CL:0000236!5.08e-13!14;CL:0000763!5.74e-13!112;CL:0000049!5.74e-13!112;CL:0000625!1.86e-12!11;CL:0000766!1.59e-07!76;CL:0000945!1.97e-07!24;CL:0000826!1.97e-07!24;CL:0000624!2.05e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.54e-32;25!CL:0000791;3.73e-29;18!CL:0000789;3.73e-29;18!CL:0002419;3.73e-29;18!CL:0000542;1.53e-24;53!CL:0000236;1.64e-19;13!CL:0000625;6.97e-19;11!CL:0000624;7.07e-11;6!CL:0000945;5.37e-09;24!CL:0002087;6.96e-09;104!CL:0000094;3.27e-07;8!CL:0000738;4.97e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,9.97e-41,52;CL:0000542,1.03e-39,53;CL:0000051,1.03e-39,53;CL:0000037,3.68e-38,168;CL:0000988,4.10e-35,177;CL:0000084,7.52e-32,25;CL:0000827,7.52e-32,25;CL:0000738,8.44e-32,136;CL:0002032,2.99e-31,161;CL:0000837,2.99e-31,161;CL:0000791,3.92e-29,18;CL:0000789,3.92e-29,18;CL:0002420,3.92e-29,18;CL:0002419,3.92e-29,18;CL:0000790,3.92e-29,18;CL:0002087,1.80e-26,115;CL:0002031,7.28e-22,120;CL:0000625,6.37e-19,11;CL:0000236,8.20e-18,14;CL:0000624,6.79e-11,6;CL:0000945,5.68e-09,24;CL:0000826,5.68e-09,24;CL:0000134,1.14e-07,354;CL:0000094,3.20e-07,8;CL:0002320,3.41e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000790;3.73e-29;18!CL:0000051;1.53e-24;53 | |||
|ontology_enrichment_disease=DOID:1240!8.71e-12!39;DOID:2531!4.37e-11!51;DOID:0060083!4.37e-11!51;DOID:8692!3.13e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;5.12e-08;39!DOID:8692;1.70e-07;31!DOID:2531;6.10e-07;51!DOID:0060083;6.10e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.71e-10,39;DOID:2531,1.17e-09,51;DOID:0060083,1.17e-09,51;DOID:8692,1.31e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.03e-13!15;UBERON:0000179!2.03e-13!15;UBERON:0000463!2.03e-13!15;UBERON:0002390!1.10e-12!102;UBERON:0003061!1.10e-12!102;UBERON:0002193!1.18e-11!112;UBERON:0007023!1.52e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.14e-14;15!UBERON:0000179;1.14e-14;15!UBERON:0000463;1.14e-14;15!UBERON:0002390;5.17e-12;32!UBERON:0002193;4.23e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.81e-15,15;UBERON:0000179,9.81e-15,15;UBERON:0000463,9.81e-15,15;UBERON:0004177,2.38e-08,7;UBERON:0005057,2.38e-08,7;UBERON:0002390,3.84e-08,98;UBERON:0003061,3.84e-08,98;UBERON:0002193,4.64e-08,108;UBERON:0002370,1.61e-07,4;UBERON:0005058,1.61e-07,4;UBERON:0009113,1.61e-07,4;UBERON:0003295,1.61e-07,4;UBERON:0005562,1.61e-07,4 | |||
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| |||
|short_description=p4@SATB1 | |||
}} |
Revision as of 23:06, 12 September 2013
Short description: | p4@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SATB1_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | 0bp_to_ENST00000415069_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | C9JGL9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 9.97e-41 | 52 |
lymphocyte | 1.03e-39 | 53 |
common lymphoid progenitor | 1.03e-39 | 53 |
hematopoietic stem cell | 3.68e-38 | 168 |
hematopoietic cell | 4.10e-35 | 177 |
T cell | 7.52e-32 | 25 |
pro-T cell | 7.52e-32 | 25 |
leukocyte | 8.44e-32 | 136 |
hematopoietic oligopotent progenitor cell | 2.99e-31 | 161 |
hematopoietic multipotent progenitor cell | 2.99e-31 | 161 |
mature alpha-beta T cell | 3.92e-29 | 18 |
alpha-beta T cell | 3.92e-29 | 18 |
immature T cell | 3.92e-29 | 18 |
mature T cell | 3.92e-29 | 18 |
immature alpha-beta T cell | 3.92e-29 | 18 |
nongranular leukocyte | 1.80e-26 | 115 |
hematopoietic lineage restricted progenitor cell | 7.28e-22 | 120 |
CD8-positive, alpha-beta T cell | 6.37e-19 | 11 |
B cell | 8.20e-18 | 14 |
CD4-positive, alpha-beta T cell | 6.79e-11 | 6 |
lymphocyte of B lineage | 5.68e-09 | 24 |
pro-B cell | 5.68e-09 | 24 |
mesenchymal cell | 1.14e-07 | 354 |
granulocyte | 3.20e-07 | 8 |
connective tissue cell | 3.41e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
blood | 9.81e-15 | 15 |
haemolymphatic fluid | 9.81e-15 | 15 |
organism substance | 9.81e-15 | 15 |
hemopoietic organ | 2.38e-08 | 7 |
immune organ | 2.38e-08 | 7 |
hematopoietic system | 3.84e-08 | 98 |
blood island | 3.84e-08 | 98 |
hemolymphoid system | 4.64e-08 | 108 |
thymus | 1.61e-07 | 4 |
hemolymphoid system gland | 1.61e-07 | 4 |
thymic region | 1.61e-07 | 4 |
pharyngeal gland | 1.61e-07 | 4 |
thymus primordium | 1.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.71e-10 | 39 |
hematologic cancer | 1.17e-09 | 51 |
immune system cancer | 1.17e-09 | 51 |
myeloid leukemia | 1.31e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.