FFCP PHASE1:Hg19::chr3:129693555..129693572,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7200|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12298|TSSclassifier=S|UniProt=D6RFM1|association_with_transcript=24bp_to_ENST00000507066_5end|description=CAGE_peak_1_at_TRH_5end|id=chr3:129693555..129693572,+|ontology_enrichment_celltype=CL:0002334!7.91e-11!12|ontology_enrichment_celltype_v019=CL:0002334;4.65e-15;12!CL:0000135;6.25e-09;3!CL:0000388;6.25e-09;3!CL:0002580;1.32e-08;3|ontology_enrichment_celltype_v019_2=CL:0002334,4.28e-15,12;CL:0000135,6.03e-09,3;CL:0000388,6.03e-09,3;CL:0002580,1.26e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.98e-15!82;UBERON:0001049!1.03e-14!57;UBERON:0005068!1.03e-14!57;UBERON:0006241!1.03e-14!57;UBERON:0007135!1.03e-14!57;UBERON:0005743!1.86e-14!86;UBERON:0003075!3.06e-14!86;UBERON:0007284!3.06e-14!86;UBERON:0000073!1.66e-13!94;UBERON:0001016!1.66e-13!94;UBERON:0002346!5.40e-13!90;UBERON:0002616!1.32e-11!59;UBERON:0000955!8.14e-10!69;UBERON:0006238!8.14e-10!69;UBERON:0007023!2.45e-09!115;UBERON:0002780!4.21e-09!41;UBERON:0001890!4.21e-09!41;UBERON:0006240!4.21e-09!41;UBERON:0002020!4.30e-09!34;UBERON:0003528!4.30e-09!34;UBERON:0001893!8.58e-09!34;UBERON:0003080!1.00e-08!42;UBERON:0002791!3.35e-08!33;UBERON:0004121!3.92e-08!169;UBERON:0003076!5.39e-08!15;UBERON:0003057!5.39e-08!15;UBERON:0001869!6.97e-08!32;UBERON:0000924!1.35e-07!173;UBERON:0006601!1.35e-07!173;UBERON:0002298!7.95e-07!8;UBERON:0000153!9.07e-07!129;UBERON:0007811!9.07e-07!129|ontology_enrichment_uberon_v019=UBERON:0004732;2.06e-10;13!UBERON:0002298;5.33e-10;6!UBERON:0007846;6.25e-09;3!UBERON:0000043;6.25e-09;3!UBERON:0007845;6.25e-09;3!UBERON:0004733;6.44e-09;12!UBERON:0002028;6.44e-09;12!UBERON:0001896;2.95e-08;3!UBERON:0005290;2.95e-08;3!UBERON:0004457;8.04e-07;9!UBERON:0000042;8.04e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.77e-11,15;UBERON:0003057,1.77e-11,15;UBERON:0004732,2.17e-10,13;UBERON:0002298,6.00e-10,6;UBERON:0007846,6.03e-09,3;UBERON:0000043,6.03e-09,3;UBERON:0007845,6.03e-09,3;UBERON:0004733,6.74e-09,12;UBERON:0002028,6.74e-09,12;UBERON:0007277,6.74e-09,12;UBERON:0001896,2.40e-08,3;UBERON:0005290,2.40e-08,3;UBERON:0010096,2.40e-08,3;UBERON:0001016,2.75e-08,89;UBERON:0001017,5.97e-08,81;UBERON:0003075,6.66e-08,82;UBERON:0007284,6.66e-08,82;UBERON:0002346,2.64e-07,86;UBERON:0001049,9.41e-07,56;UBERON:0005068,9.41e-07,56;UBERON:0006241,9.41e-07,56;UBERON:0007135,9.41e-07,56|phase1_expression=8.90224058425727,0,1.40954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70866327768933,0,3.44800193625897,0,0.136874425072884,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,3.52320527201817,0,0,0.217010870715852,0,0,0,0.145398238779565,0.755751887377619,0,0.232429036905685,0.822335776043652,0.619412741790207,0,0.512321413058201,0,0,1.29096936716765,0,0.188242339542605,0.545812300115692,0.898893937780338,0,1.92557416245656,1.27867425159808,0,0,0,0,0.56738522469114,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0.212604299965044,0,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,6.60856642895129,5.04457706683382,7.11137028892708,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,0,12.31195411167,0,0,0,0,0.351339142772504,1.5062593682237,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.866765874594,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0.355009592516614,0,0.169560592310488,0,0,0,0.975789649036763,0.265059536642971,8.24976994373581,20.421227838028,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,33.3879566328221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.895304816199478,0,0,0,0,1.77866236955724,3.90419561572865,1.54657762555539,2.68026024534958,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0.601892199455438,2.27407504055985,3.10419213877515,49.8169198901577,8.48098175291834,0,0,0,0,0.647142602455851,0.106727557803444,0,0,0,68.4777549579824,5.98501695823444,5.89386198309454,10.8918276867346,0.511707249066704,2.0911009748669,5.93672265779964,0.154209693802656,1.42049380250502,4.02423064467665,0,1.85936605535935,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.02687735119034,0.770243085573222,0.614014698904518,0.413509717453592,0.214840489736547,2.32026710262766,0.596586391912706,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0.95460974377781,0,0,0,0.117812402345686,0,0,0,0,1.21856744815642,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,1.239293992399,0,0,0,0,0.354761064070598,74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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7200 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12298 | |||
|TSSclassifier=S | |||
|UniProt=D6RFM1 | |||
|association_with_transcript=24bp_to_ENST00000507066_5end | |||
|description=CAGE_peak_1_at_TRH_5end | |||
|id=chr3:129693555..129693572,+ | |||
|ontology_enrichment_celltype=CL:0002334!7.91e-11!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;4.65e-15;12!CL:0000135;6.25e-09;3!CL:0000388;6.25e-09;3!CL:0002580;1.32e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,4.28e-15,12;CL:0000135,6.03e-09,3;CL:0000388,6.03e-09,3;CL:0002580,1.26e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.98e-15!82;UBERON:0001049!1.03e-14!57;UBERON:0005068!1.03e-14!57;UBERON:0006241!1.03e-14!57;UBERON:0007135!1.03e-14!57;UBERON:0005743!1.86e-14!86;UBERON:0003075!3.06e-14!86;UBERON:0007284!3.06e-14!86;UBERON:0000073!1.66e-13!94;UBERON:0001016!1.66e-13!94;UBERON:0002346!5.40e-13!90;UBERON:0002616!1.32e-11!59;UBERON:0000955!8.14e-10!69;UBERON:0006238!8.14e-10!69;UBERON:0007023!2.45e-09!115;UBERON:0002780!4.21e-09!41;UBERON:0001890!4.21e-09!41;UBERON:0006240!4.21e-09!41;UBERON:0002020!4.30e-09!34;UBERON:0003528!4.30e-09!34;UBERON:0001893!8.58e-09!34;UBERON:0003080!1.00e-08!42;UBERON:0002791!3.35e-08!33;UBERON:0004121!3.92e-08!169;UBERON:0003076!5.39e-08!15;UBERON:0003057!5.39e-08!15;UBERON:0001869!6.97e-08!32;UBERON:0000924!1.35e-07!173;UBERON:0006601!1.35e-07!173;UBERON:0002298!7.95e-07!8;UBERON:0000153!9.07e-07!129;UBERON:0007811!9.07e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;2.06e-10;13!UBERON:0002298;5.33e-10;6!UBERON:0007846;6.25e-09;3!UBERON:0000043;6.25e-09;3!UBERON:0007845;6.25e-09;3!UBERON:0004733;6.44e-09;12!UBERON:0002028;6.44e-09;12!UBERON:0001896;2.95e-08;3!UBERON:0005290;2.95e-08;3!UBERON:0004457;8.04e-07;9!UBERON:0000042;8.04e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.77e-11,15;UBERON:0003057,1.77e-11,15;UBERON:0004732,2.17e-10,13;UBERON:0002298,6.00e-10,6;UBERON:0007846,6.03e-09,3;UBERON:0000043,6.03e-09,3;UBERON:0007845,6.03e-09,3;UBERON:0004733,6.74e-09,12;UBERON:0002028,6.74e-09,12;UBERON:0007277,6.74e-09,12;UBERON:0001896,2.40e-08,3;UBERON:0005290,2.40e-08,3;UBERON:0010096,2.40e-08,3;UBERON:0001016,2.75e-08,89;UBERON:0001017,5.97e-08,81;UBERON:0003075,6.66e-08,82;UBERON:0007284,6.66e-08,82;UBERON:0002346,2.64e-07,86;UBERON:0001049,9.41e-07,56;UBERON:0005068,9.41e-07,56;UBERON:0006241,9.41e-07,56;UBERON:0007135,9.41e-07,56 | |||
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|short_description=p1@TRH | |||
}} |
Revision as of 21:31, 12 September 2013
Short description: | p1@TRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRH_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_ENST00000507066_5end |
EntrezGene: | TRH |
HGNC: | 12298 |
UniProt: | D6RFM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 4.28e-15 | 12 |
fibrocyte | 6.03e-09 | 3 |
tendon cell | 6.03e-09 | 3 |
preadipocyte of the breast | 1.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 1.77e-11 | 15 |
chordal neural plate | 1.77e-11 | 15 |
segmental subdivision of nervous system | 2.17e-10 | 13 |
brainstem | 6.00e-10 | 6 |
dense regular connective tissue | 6.03e-09 | 3 |
tendon | 6.03e-09 | 3 |
regular connective tissue | 6.03e-09 | 3 |
segmental subdivision of hindbrain | 6.74e-09 | 12 |
hindbrain | 6.74e-09 | 12 |
presumptive hindbrain | 6.74e-09 | 12 |
medulla oblongata | 2.40e-08 | 3 |
myelencephalon | 2.40e-08 | 3 |
future myelencephalon | 2.40e-08 | 3 |
nervous system | 2.75e-08 | 89 |
central nervous system | 5.97e-08 | 81 |
neural plate | 6.66e-08 | 82 |
presumptive neural plate | 6.66e-08 | 82 |
neurectoderm | 2.64e-07 | 86 |
neural tube | 9.41e-07 | 56 |
neural rod | 9.41e-07 | 56 |
future spinal cord | 9.41e-07 | 56 |
neural keel | 9.41e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.