FFCP PHASE1:Mm9::chr11:86887557..86887573,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66569|HGNC=|UniProt=Q9CRY7|association_with_transcript=0bp_to_ENSMUST00000020804_5end|description=CAGE_peak_1_at_Gdpd1_5end|id=chr11:86887557..86887573,-|ontology_enrichment_celltype=CL:0000540!1.87e-12!33;CL:0000047!1.87e-12!33;CL:0000031!1.87e-12!33;CL:0000404!1.87e-12!33;CL:0000393!6.41e-12!39;CL:0000211!6.41e-12!39;CL:0000117!1.19e-09!23;CL:0000337!1.19e-09!23;CL:0000221!3.59e-08!44;CL:0000133!3.59e-08!44;CL:0002319!9.32e-08!43;CL:0000055!3.52e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.83e-12,33;CL:0000047,1.83e-12,33;CL:0000031,1.83e-12,33;CL:0000404,1.83e-12,33;CL:0000393,6.29e-12,39;CL:0000211,6.29e-12,39;CL:0000117,1.17e-09,23;CL:0000337,1.17e-09,23;CL:0000221,3.96e-08,44;CL:0000133,3.96e-08,44;CL:0002319,1.03e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.13e-13!102;UBERON:0000924!1.13e-13!102;UBERON:0006601!1.13e-13!102;UBERON:0001017!3.38e-13!73;UBERON:0005743!3.38e-13!73;UBERON:0000073!4.11e-13!75;UBERON:0001016!4.11e-13!75;UBERON:0000033!1.33e-12!63;UBERON:0002346!6.70e-11!71;UBERON:0003075!6.70e-11!71;UBERON:0007284!6.70e-11!71;UBERON:0003056!4.95e-10!49;UBERON:0001049!1.75e-09!52;UBERON:0005068!1.75e-09!52;UBERON:0006241!1.75e-09!52;UBERON:0007135!1.75e-09!52;UBERON:0000344!6.02e-09!15;UBERON:0002020!7.18e-09!34;UBERON:0000955!3.19e-08!50;UBERON:0006238!3.19e-08!50;UBERON:0002616!6.16e-08!49;UBERON:0001242!9.57e-08!13;UBERON:0000060!9.57e-08!13;UBERON:0001262!9.57e-08!13;UBERON:0004786!9.57e-08!13;UBERON:0003080!1.65e-07!40;UBERON:0000468!2.68e-07!333;UBERON:0002780!2.84e-07!39;UBERON:0001890!2.84e-07!39;UBERON:0006240!2.84e-07!39;UBERON:0002791!5.59e-07!29;UBERON:0003528!5.59e-07!29;UBERON:0001893!5.59e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-15,95;UBERON:0000924,1.39e-15,95;UBERON:0006601,1.39e-15,95;UBERON:0001017,3.72e-13,73;UBERON:0002346,4.44e-13,64;UBERON:0003075,4.44e-13,64;UBERON:0007284,4.44e-13,64;UBERON:0001016,4.52e-13,75;UBERON:0010371,1.46e-12,73;UBERON:0010314,1.93e-12,92;UBERON:0003056,4.88e-10,49;UBERON:0000073,1.04e-09,54;UBERON:0001049,1.92e-09,52;UBERON:0005068,1.92e-09,52;UBERON:0006241,1.92e-09,52;UBERON:0007135,1.92e-09,52;UBERON:0000344,5.94e-09,15;UBERON:0002020,7.09e-09,34;UBERON:0000160,2.43e-08,31;UBERON:0001242,9.46e-08,13;UBERON:0001262,9.46e-08,13;UBERON:0004786,9.46e-08,13;UBERON:0000955,1.01e-07,47;UBERON:0006238,1.01e-07,47;UBERON:0003080,1.64e-07,40;UBERON:0002616,1.92e-07,46;UBERON:0002780,2.81e-07,39;UBERON:0001890,2.81e-07,39;UBERON:0006240,2.81e-07,39;UBERON:0003528,5.53e-07,29;UBERON:0002791,5.53e-07,29;UBERON:0001893,5.53e-07,29;UBERON:0000922,7.04e-07,320|phase1_expression=44.2010818009231,132.959630310597,115.569806804942,117.961042409664,100.680041719216,62.2832098793111,69.1493416162756,0.645616617207881,0.281577444303333,0,0.171217968225505,0.159544317990673,0.342401459862411,0.34968160967599,4.99664642723494,3.84703008040669,6.29605690315332,0.788655413395594,0.548457734422955,0.42438965179803,41.5011255937221,3.77305614563364,3.6567970479451,100.155256668673,126.175104586944,134.370279602915,128.367074855404,126.912556051989,437.623935008029,332.175711023589,189.801317120941,4.44521471421742,4.92051830067656,0,28.8851619751275,32.5819904902645,22.662798545123,0,0,0,0,0.683045484958446,0,38.2726326645755,38.624610794635,35.9751634236896,0.782391344348039,11.7733584445441,3.73466510648602,7.58276606389705,6.43937539476668,12.9377307928474,0,0.725362142011344,0.672187598284928,9.26133969729409,10.601737277734,11.8604581223812,64.7412674750713,76.1747010151727,83.6657452628156,1.69422266034566,0.889294796111139,17.5480444869873,18.7884608887725,9.2362414942993,7.78960287347852,8.06858441175265,40.4389488003063,46.0370249711065,40.8030425021681,40.2767888009363,42.4067598627098,56.3457676388789,52.8108545310482,79.0528156484618,23.1243350098716,26.558966321719,27.9563890526363,71.3504816620349,63.7668875908795,57.8213841318004,31.2684958881547,23.6360296213306,30.4068513075852,41.2480019663135,43.9928493669228,62.0710154598251,14.2365243466386,20.1020349884049,5.2175607966302,0.860423876981386,3.39985666853875,4.85732872474035,1.29955283489534,0.896053774194671,18.679107877523,0.681721290312231,0.259786004602869,0,59.2950797259825,0,0,0,11.0410430915719,11.4011939463794,13.6491600153991,34.3693477954371,5.43769555659061,7.86743337043571,9.1947223186052,16.1366703505435,9.91646638201052,11.1534754008941,12.9347577849275,4.77533047052767,2.71914464507811,2.74738778147832,7.07688441559899,4.85300549842228,4.41683036920787,2.42437626567611,74.5567044872489,24.8863677459815,31.2075593152048,187.760935578315,0.359445373517761,0.599902730993408,0.127070227073065,32.3547781114417,38.8875512395833,74.2617220987029,27.2904182701874,31.9644321662913,32.6227229958509,34.0706652442291,12.4244023897386,7.46441823660558,16.6797020566225,39.1421851948842,26.4144499214289,29.4274693674845,30.6105620669094,33.9085840130359,48.1698413991401,58.54797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| ||
|EntrezGene=66569 | |||
|HGNC= | |||
|UniProt=Q9CRY7 | |||
|association_with_transcript=0bp_to_ENSMUST00000020804_5end | |||
|description=CAGE_peak_1_at_Gdpd1_5end | |||
|id=chr11:86887557..86887573,- | |||
|ontology_enrichment_celltype=CL:0000540!1.87e-12!33;CL:0000047!1.87e-12!33;CL:0000031!1.87e-12!33;CL:0000404!1.87e-12!33;CL:0000393!6.41e-12!39;CL:0000211!6.41e-12!39;CL:0000117!1.19e-09!23;CL:0000337!1.19e-09!23;CL:0000221!3.59e-08!44;CL:0000133!3.59e-08!44;CL:0002319!9.32e-08!43;CL:0000055!3.52e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.83e-12,33;CL:0000047,1.83e-12,33;CL:0000031,1.83e-12,33;CL:0000404,1.83e-12,33;CL:0000393,6.29e-12,39;CL:0000211,6.29e-12,39;CL:0000117,1.17e-09,23;CL:0000337,1.17e-09,23;CL:0000221,3.96e-08,44;CL:0000133,3.96e-08,44;CL:0002319,1.03e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.13e-13!102;UBERON:0000924!1.13e-13!102;UBERON:0006601!1.13e-13!102;UBERON:0001017!3.38e-13!73;UBERON:0005743!3.38e-13!73;UBERON:0000073!4.11e-13!75;UBERON:0001016!4.11e-13!75;UBERON:0000033!1.33e-12!63;UBERON:0002346!6.70e-11!71;UBERON:0003075!6.70e-11!71;UBERON:0007284!6.70e-11!71;UBERON:0003056!4.95e-10!49;UBERON:0001049!1.75e-09!52;UBERON:0005068!1.75e-09!52;UBERON:0006241!1.75e-09!52;UBERON:0007135!1.75e-09!52;UBERON:0000344!6.02e-09!15;UBERON:0002020!7.18e-09!34;UBERON:0000955!3.19e-08!50;UBERON:0006238!3.19e-08!50;UBERON:0002616!6.16e-08!49;UBERON:0001242!9.57e-08!13;UBERON:0000060!9.57e-08!13;UBERON:0001262!9.57e-08!13;UBERON:0004786!9.57e-08!13;UBERON:0003080!1.65e-07!40;UBERON:0000468!2.68e-07!333;UBERON:0002780!2.84e-07!39;UBERON:0001890!2.84e-07!39;UBERON:0006240!2.84e-07!39;UBERON:0002791!5.59e-07!29;UBERON:0003528!5.59e-07!29;UBERON:0001893!5.59e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-15,95;UBERON:0000924,1.39e-15,95;UBERON:0006601,1.39e-15,95;UBERON:0001017,3.72e-13,73;UBERON:0002346,4.44e-13,64;UBERON:0003075,4.44e-13,64;UBERON:0007284,4.44e-13,64;UBERON:0001016,4.52e-13,75;UBERON:0010371,1.46e-12,73;UBERON:0010314,1.93e-12,92;UBERON:0003056,4.88e-10,49;UBERON:0000073,1.04e-09,54;UBERON:0001049,1.92e-09,52;UBERON:0005068,1.92e-09,52;UBERON:0006241,1.92e-09,52;UBERON:0007135,1.92e-09,52;UBERON:0000344,5.94e-09,15;UBERON:0002020,7.09e-09,34;UBERON:0000160,2.43e-08,31;UBERON:0001242,9.46e-08,13;UBERON:0001262,9.46e-08,13;UBERON:0004786,9.46e-08,13;UBERON:0000955,1.01e-07,47;UBERON:0006238,1.01e-07,47;UBERON:0003080,1.64e-07,40;UBERON:0002616,1.92e-07,46;UBERON:0002780,2.81e-07,39;UBERON:0001890,2.81e-07,39;UBERON:0006240,2.81e-07,39;UBERON:0003528,5.53e-07,29;UBERON:0002791,5.53e-07,29;UBERON:0001893,5.53e-07,29;UBERON:0000922,7.04e-07,320 | |||
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| |||
|short_description=p1@Gdpd1 | |||
}} |
Revision as of 21:19, 12 September 2013
Short description: | p1@Gdpd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gdpd1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000020804_5end |
EntrezGene: | Gdpd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.83e-12 | 33 |
neuronal stem cell | 1.83e-12 | 33 |
neuroblast | 1.83e-12 | 33 |
electrically signaling cell | 1.83e-12 | 33 |
electrically responsive cell | 6.29e-12 | 39 |
electrically active cell | 6.29e-12 | 39 |
CNS neuron (sensu Vertebrata) | 1.17e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-09 | 23 |
ectodermal cell | 3.96e-08 | 44 |
neurectodermal cell | 3.96e-08 | 44 |
neural cell | 1.03e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.39e-15 | 95 |
ectoderm | 1.39e-15 | 95 |
presumptive ectoderm | 1.39e-15 | 95 |
central nervous system | 3.72e-13 | 73 |
neurectoderm | 4.44e-13 | 64 |
neural plate | 4.44e-13 | 64 |
presumptive neural plate | 4.44e-13 | 64 |
nervous system | 4.52e-13 | 75 |
ecto-epithelium | 1.46e-12 | 73 |
structure with developmental contribution from neural crest | 1.93e-12 | 92 |
pre-chordal neural plate | 4.88e-10 | 49 |
regional part of nervous system | 1.04e-09 | 54 |
neural tube | 1.92e-09 | 52 |
neural rod | 1.92e-09 | 52 |
future spinal cord | 1.92e-09 | 52 |
neural keel | 1.92e-09 | 52 |
mucosa | 5.94e-09 | 15 |
gray matter | 7.09e-09 | 34 |
intestine | 2.43e-08 | 31 |
intestinal mucosa | 9.46e-08 | 13 |
wall of intestine | 9.46e-08 | 13 |
gastrointestinal system mucosa | 9.46e-08 | 13 |
brain | 1.01e-07 | 47 |
future brain | 1.01e-07 | 47 |
anterior neural tube | 1.64e-07 | 40 |
regional part of brain | 1.92e-07 | 46 |
regional part of forebrain | 2.81e-07 | 39 |
forebrain | 2.81e-07 | 39 |
future forebrain | 2.81e-07 | 39 |
brain grey matter | 5.53e-07 | 29 |
regional part of telencephalon | 5.53e-07 | 29 |
telencephalon | 5.53e-07 | 29 |
embryo | 7.04e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.