FFCP PHASE1:Mm9::chr11:82684635..82684685,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67338|HGNC=|MCL_coexpression_id=3|UniProt=Q3UCG9,Q6ZQM0,Q3TEV8,Q3UD78|association_with_transcript=26bp_to_ENSMUST00000071152,ENSMUST00000108169,ENSMUST00000108173,NM_001007465,NM_001164569,NM_001164571,uc007knj.2,uc007knk.2,uc007knl.2_5end|description=CAGE_peak_1_at_Rffl_5end|id=chr11:82684635..82684685,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!1.02e-11!70;UBERON:0005172!4.83e-10!49;UBERON:0005173!4.83e-10!49;UBERON:0002417!4.83e-10!49;UBERON:0000916!4.83e-10!49;UBERON:0009854!1.55e-09!23;UBERON:0009856!1.55e-09!23;UBERON:0003104!2.33e-09!131;UBERON:0009142!2.33e-09!131;UBERON:0002107!2.77e-09!22;UBERON:0007499!2.77e-09!22;UBERON:0006925!2.77e-09!22;UBERON:0009497!2.77e-09!22;UBERON:0000015!2.77e-09!22;UBERON:0002423!2.77e-09!22;UBERON:0006235!2.77e-09!22;UBERON:0008835!2.77e-09!22;UBERON:0003894!2.77e-09!22;UBERON:0004161!2.77e-09!22;UBERON:0008836!2.77e-09!22;UBERON:0002365!5.34e-09!25;UBERON:0002330!5.34e-09!25;UBERON:0005057!6.47e-09!51;UBERON:0009569!3.21e-08!66;UBERON:0000926!1.71e-07!193;UBERON:0004120!1.71e-07!193;UBERON:0006603!1.71e-07!193;UBERON:0000490!1.92e-07!66;UBERON:0000077!2.05e-07!97;UBERON:0005911!6.03e-07!69;UBERON:0001041!9.33e-07!92|ontology_enrichment_uberon_v019_2=UBERON:0005172,4.83e-10,49;UBERON:0005173,4.83e-10,49;UBERON:0002417,4.83e-10,49;UBERON:0000916,4.83e-10,49;UBERON:0009854,1.55e-09,23;UBERON:0009856,1.55e-09,23;UBERON:0002107,2.77e-09,22;UBERON:0007499,2.77e-09,22;UBERON:0006925,2.77e-09,22;UBERON:0009497,2.77e-09,22;UBERON:0000015,2.77e-09,22;UBERON:0002423,2.77e-09,22;UBERON:0006235,2.77e-09,22;UBERON:0008835,2.77e-09,22;UBERON:0003894,2.77e-09,22;UBERON:0004161,2.77e-09,22;UBERON:0008836,2.77e-09,22;UBERON:0003104,4.53e-09,61;UBERON:0009142,4.53e-09,61;UBERON:0002365,5.34e-09,25;UBERON:0002330,5.34e-09,25;UBERON:0001041,1.41e-08,80;UBERON:0009569,3.21e-08,66;UBERON:0004119,1.30e-07,118;UBERON:0000925,1.30e-07,118;UBERON:0006595,1.30e-07,118;UBERON:0000490,1.89e-07,66;UBERON:0002100,3.81e-07,90;UBERON:0004921,3.99e-07,114;UBERON:0001007,4.02e-07,116;UBERON:0001555,4.02e-07,116;UBERON:0007026,4.02e-07,116;UBERON:0005911,5.94e-07,69|phase1_expression=6.56610273129655,7.67745896806594,17.2899710968024,5.44435580352294,6.01074875935617,7.55456723603504,5.37309073369709,8.26389270026088,9.43284438416167,14.0438715793196,6.16384685611818,7.41881078656629,9.75844160607873,10.4904482902797,18.6541466616771,23.0821804824402,24.4846657344851,7.5710919685977,7.81552271552711,10.6097412949508,6.80346321208558,5.95745707205312,4.70159620450084,6.07971206614945,5.27641346454491,8.6134794617253,9.04600191934057,7.32602191132023,2.09025761402011,6.04872311423834,5.32153225572731,8.25539875497521,16.6067492647834,0,4.04392267651784,4.65457007003779,5.71674197534634,50.2237956884289,35.160090503571,39.7878045420087,74.1171674919078,54.6436387966757,59.2322630698007,4.40638862914521,4.46058497365864,4.9557623083654,3.12956537739216,5.66865406589161,1.09843091367236,1.55543919259427,2.93971485413261,0,5.70460860596304,4.35217285206807,7.05796978199174,6.17422646486273,8.5960031981627,3.6097046459421,1.21389876515759,0.528990979272033,3.1691570175309,2.37191172448392,1.77858959222228,6.29929802096979,5.93319817540185,2.8419204597844,5.09320187881288,6.53171119046643,1.97010263386108,1.35005938331691,4.41682418837902,6.56997264128748,4.63823935998388,14.3314235081496,13.0349840584801,16.5459381589804,14.3150645299205,9.95961237064464,11.5204899942183,0.791317726381163,1.18933936683133,1.04182674111352,15.355064945076,6.19038871034848,10.2374826010463,2.94628585473668,3.70166370077668,2.42319279572891,3.02904773332736,1.81371744256285,13.3337664802772,12.9063581547208,13.599426674155,9.71465744948071,12.9955283489534,9.40856462904405,6.88177658645584,4.94247935476367,4.67614808285164,4.24007489412408,6.05626705039726,6.41632387071589,5.09610479413291,0,2.16491041011214,3.04031838570118,1.51657333504435,10.2765491747154,9.83963957859253,2.82040064223167,3.29622120855658,1.82679286987285,5.30415643688935,1.95939432718409,2.93971767839262,2.13633205260448,19.5284024510155,4.48258006451726,14.153768831198,5.82360659810673,16.3422723660691,6.78825354389311,9.31958806090611,4.39171195517321,6.49284791121711,4.59822699375465,10.0644704584973,10.7982491578813,8.13249453267614,7.18995069143149,8.6925114535539,2.1361239859187,3.65031072403781,3.83573185995496,8.10373373782284,11.356888414743,5.19380755636613,11.6942552373487,7.07623723614289,8.20723237957248,2.34216797332867,0.689706313300419,3.78130472591233,4.82255417074288,4.01415344992834,4.61209393025459,5.05989312622536,9.57202471734358,3.44908788692548,5.48407632486676,6.862093842394,3.72632745126877,3.33656699070717,6.61679116392116,6.79081050146213,5.17489093728082,11.937624184325,9.00717674901503,8.80906848126337,2.69263504296152,1.40715635988658,1.80062061461015,2.84093682702252,2.16440654922144,1.54267112887378,3.0229412817553,2.68273401399619,2.56883753207773,2.96207729844265,4.26835406605648,4.9451973822972,4.09359964790931,4.61055242111206,6.03928884421673,4.20579897128254,1.85228302282712,4.95628174475697,4.7601101999438,2.13288250535234,2.32236671860439,2.57734922644187,4.03367049246685,4.00280478920767,6.65789691393957,4.74529061544512,4.94096864172033,5.27803938480566,7.16243299348143,8.57841983324129,10.7858329038507,4.32276099749388,6.77080329064848,5.50036912763937,5.71242563048644,10.1436962105772,7.73875045812194,9.11576689687841,10.3801013437671,12.2046516649817,9.44704947069454,11.6179058602617,9.87177311374404,13.6368208460088,9.17648081438517,13.3660116676978,14.3911751926306,17.6488305607998,24.1177159752417,15.5321769586666,19.5633373466551,11.3494658742525,7.13859674289012,12.9391385874619,7.07067800570156,9.67316786655138,7.57736633841335,5.9201146462231,9.64887042726734,4.61882975416512,3.22135400009824,3.25929952884052,3.22515662972857,4.69380496577004,6.19773152534718,8.56957107189649,11.3177515757523,7.88175720530955,7.0868700687608,9.40783135079174,9.34020893879707,6.73471429276993,9.25753974921674,6.03165135757089,7.61467957346193,10.3270497333998,8.27810238914197,9.63303539926752,21.0981035865966,2.29508923527346,7.06918596172244,2.2085575359138,1.17131623288992,2.58508077279359,2.15071918157297,0.891194696329576,1.69845918473299,2.42886421004937,2.63030272120181,1.58115111178609,3.21321316421807,6.10342366395555,2.13678724400706,6.35259141478947,6.43383479592888,3.98235415019888,3.8844901784797,2.11626489875326,5.46954731292105,4.72483028609236,3.99665692327106,8.01127708821486,6.18007340111759,4.63446591900138,4.10847785316561,5.27093042874994,4.12542172992747,3.40439605753788,1.44048875225048,2.45781499187234,4.07240366560025,3.90148514013002,2.85390108163313,3.1264313914403,3.65357938937519,6.8054795338476,21.183207086382,7.93902232997863,7.25499512942512,8.88054346827481,7.47880269109133,9.54978752025092,10.9974402829191,5.53813589596716,15.0194494628513,16.232733675796,8.04908785056568,10.926477114813,19.4019510714832,17.4968611482912,25.394377225924,7.47905091972963,6.57771825921193,6.35719879500349,11.4560474161814,4.9032079005076,4.87966721104437,8.8564379473877,9.82714991268003,9.82631536857799,10.2496903252464,10.1663750542163,10.7319936213452,7.38805347763219,3.10669656543463,1.12738587736838,5.53211220362722,5.46013018508422,7.00024278038572,4.52059382172059,3.21016638432478,2.46450201156083,6.51021924219751,6.50127935439407,2.41584120826006,2.01621004380506,5.05617793005085,7.29810775044591,6.36807934421929,6.10627867995637,6.80301443536429,3.77494574084403,4.56742708175882,3.10148007066612,3.63479219813331,6.40137175901999,4.2346997757473,4.77543615624787,5.00301576529713,6.42822961998629,2.94749498699775,7.99149432146633,3.13998498133165,2.85403847818933,5.9888774149979,4.69206188627955,7.14291334642334,5.57357785605571,10.5330141847426,2.25900737046827,1.84130094602871,2.29158205375759,3.26521046453006,3.42541259885321,3.0215755895588,2.70009000092722,0.45032120322422,2.26571204492102,3.62432218226274,1.66059756134683,2.79317411380722,3.58540572083682,4.132814190161,3.77303692730368,2.38996560985018,4.4449345560323,3.7086310303001,3.85103051510178,2.02157769411038,4.30914809813408,5.28153755881013,3.7456602987953,4.86591158277006,5.05432126809397,4.76293691283074,6.72129090480162,4.24400285020151,6.1812885120496,4.26876868389752,4.11443102862498,5.32427418478012,4.76872379894642,4.50573891560218,4.98779716201252,4.82303264982556,5.12198324043763,2.63069711437843,2.8518863907631,2.80571135828869,5.21994079746366,5.02372860115374,6.95692773388472,5.88759996506671,5.20847849649082,4.24677982494508,3.50897412668113,5.15690529715916,4.20834330551455,4.63241980150983,6.95603506861264|short_description=p1@Rffl}} | ||
|EntrezGene=67338 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=Q3UCG9,Q6ZQM0,Q3TEV8,Q3UD78 | |||
|association_with_transcript=26bp_to_ENSMUST00000071152,ENSMUST00000108169,ENSMUST00000108173,NM_001007465,NM_001164569,NM_001164571,uc007knj.2,uc007knk.2,uc007knl.2_5end | |||
|description=CAGE_peak_1_at_Rffl_5end | |||
|id=chr11:82684635..82684685,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.02e-11!70;UBERON:0005172!4.83e-10!49;UBERON:0005173!4.83e-10!49;UBERON:0002417!4.83e-10!49;UBERON:0000916!4.83e-10!49;UBERON:0009854!1.55e-09!23;UBERON:0009856!1.55e-09!23;UBERON:0003104!2.33e-09!131;UBERON:0009142!2.33e-09!131;UBERON:0002107!2.77e-09!22;UBERON:0007499!2.77e-09!22;UBERON:0006925!2.77e-09!22;UBERON:0009497!2.77e-09!22;UBERON:0000015!2.77e-09!22;UBERON:0002423!2.77e-09!22;UBERON:0006235!2.77e-09!22;UBERON:0008835!2.77e-09!22;UBERON:0003894!2.77e-09!22;UBERON:0004161!2.77e-09!22;UBERON:0008836!2.77e-09!22;UBERON:0002365!5.34e-09!25;UBERON:0002330!5.34e-09!25;UBERON:0005057!6.47e-09!51;UBERON:0009569!3.21e-08!66;UBERON:0000926!1.71e-07!193;UBERON:0004120!1.71e-07!193;UBERON:0006603!1.71e-07!193;UBERON:0000490!1.92e-07!66;UBERON:0000077!2.05e-07!97;UBERON:0005911!6.03e-07!69;UBERON:0001041!9.33e-07!92 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,4.83e-10,49;UBERON:0005173,4.83e-10,49;UBERON:0002417,4.83e-10,49;UBERON:0000916,4.83e-10,49;UBERON:0009854,1.55e-09,23;UBERON:0009856,1.55e-09,23;UBERON:0002107,2.77e-09,22;UBERON:0007499,2.77e-09,22;UBERON:0006925,2.77e-09,22;UBERON:0009497,2.77e-09,22;UBERON:0000015,2.77e-09,22;UBERON:0002423,2.77e-09,22;UBERON:0006235,2.77e-09,22;UBERON:0008835,2.77e-09,22;UBERON:0003894,2.77e-09,22;UBERON:0004161,2.77e-09,22;UBERON:0008836,2.77e-09,22;UBERON:0003104,4.53e-09,61;UBERON:0009142,4.53e-09,61;UBERON:0002365,5.34e-09,25;UBERON:0002330,5.34e-09,25;UBERON:0001041,1.41e-08,80;UBERON:0009569,3.21e-08,66;UBERON:0004119,1.30e-07,118;UBERON:0000925,1.30e-07,118;UBERON:0006595,1.30e-07,118;UBERON:0000490,1.89e-07,66;UBERON:0002100,3.81e-07,90;UBERON:0004921,3.99e-07,114;UBERON:0001007,4.02e-07,116;UBERON:0001555,4.02e-07,116;UBERON:0007026,4.02e-07,116;UBERON:0005911,5.94e-07,69 | |||
|phase1_expression=6.56610273129655,7.67745896806594,17.2899710968024,5.44435580352294,6.01074875935617,7.55456723603504,5.37309073369709,8.26389270026088,9.43284438416167,14.0438715793196,6.16384685611818,7.41881078656629,9.75844160607873,10.4904482902797,18.6541466616771,23.0821804824402,24.4846657344851,7.5710919685977,7.81552271552711,10.6097412949508,6.80346321208558,5.95745707205312,4.70159620450084,6.07971206614945,5.27641346454491,8.6134794617253,9.04600191934057,7.32602191132023,2.09025761402011,6.04872311423834,5.32153225572731,8.25539875497521,16.6067492647834,0,4.04392267651784,4.65457007003779,5.71674197534634,50.2237956884289,35.160090503571,39.7878045420087,74.1171674919078,54.6436387966757,59.2322630698007,4.40638862914521,4.46058497365864,4.9557623083654,3.12956537739216,5.66865406589161,1.09843091367236,1.55543919259427,2.93971485413261,0,5.70460860596304,4.35217285206807,7.05796978199174,6.17422646486273,8.5960031981627,3.6097046459421,1.21389876515759,0.528990979272033,3.1691570175309,2.37191172448392,1.77858959222228,6.29929802096979,5.93319817540185,2.8419204597844,5.09320187881288,6.53171119046643,1.97010263386108,1.35005938331691,4.41682418837902,6.56997264128748,4.63823935998388,14.3314235081496,13.0349840584801,16.5459381589804,14.3150645299205,9.95961237064464,11.5204899942183,0.791317726381163,1.18933936683133,1.04182674111352,15.355064945076,6.19038871034848,10.2374826010463,2.94628585473668,3.70166370077668,2.42319279572891,3.02904773332736,1.81371744256285,13.3337664802772,12.9063581547208,13.599426674155,9.71465744948071,12.9955283489534,9.40856462904405,6.88177658645584,4.94247935476367,4.67614808285164,4.24007489412408,6.05626705039726,6.41632387071589,5.09610479413291,0,2.16491041011214,3.04031838570118,1.51657333504435,10.2765491747154,9.83963957859253,2.82040064223167,3.29622120855658,1.82679286987285,5.30415643688935,1.95939432718409,2.93971767839262,2.13633205260448,19.5284024510155,4.48258006451726,14.153768831198,5.82360659810673,16.3422723660691,6.78825354389311,9.31958806090611,4.39171195517321,6.49284791121711,4.59822699375465,10.0644704584973,10.7982491578813,8.13249453267614,7.18995069143149,8.6925114535539,2.1361239859187,3.65031072403781,3.83573185995496,8.10373373782284,11.356888414743,5.19380755636613,11.6942552373487,7.07623723614289,8.20723237957248,2.34216797332867,0.689706313300419,3.78130472591233,4.82255417074288,4.01415344992834,4.61209393025459,5.05989312622536,9.57202471734358,3.44908788692548,5.48407632486676,6.862093842394,3.72632745126877,3.33656699070717,6.61679116392116,6.79081050146213,5.17489093728082,11.937624184325,9.00717674901503,8.80906848126337,2.69263504296152,1.40715635988658,1.80062061461015,2.84093682702252,2.16440654922144,1.54267112887378,3.0229412817553,2.68273401399619,2.56883753207773,2.96207729844265,4.26835406605648,4.9451973822972,4.09359964790931,4.61055242111206,6.03928884421673,4.20579897128254,1.85228302282712,4.95628174475697,4.7601101999438,2.13288250535234,2.32236671860439,2.57734922644187,4.03367049246685,4.00280478920767,6.65789691393957,4.74529061544512,4.94096864172033,5.27803938480566,7.16243299348143,8.57841983324129,10.7858329038507,4.32276099749388,6.77080329064848,5.50036912763937,5.71242563048644,10.1436962105772,7.73875045812194,9.11576689687841,10.3801013437671,12.2046516649817,9.44704947069454,11.6179058602617,9.87177311374404,13.6368208460088,9.17648081438517,13.3660116676978,14.3911751926306,17.6488305607998,24.1177159752417,15.5321769586666,19.5633373466551,11.3494658742525,7.13859674289012,12.9391385874619,7.07067800570156,9.67316786655138,7.57736633841335,5.9201146462231,9.64887042726734,4.61882975416512,3.22135400009824,3.25929952884052,3.22515662972857,4.69380496577004,6.19773152534718,8.56957107189649,11.3177515757523,7.88175720530955,7.0868700687608,9.40783135079174,9.34020893879707,6.73471429276993,9.25753974921674,6.03165135757089,7.61467957346193,10.3270497333998,8.27810238914197,9.63303539926752,21.0981035865966,2.29508923527346,7.06918596172244,2.2085575359138,1.17131623288992,2.58508077279359,2.15071918157297,0.891194696329576,1.69845918473299,2.42886421004937,2.63030272120181,1.58115111178609,3.21321316421807,6.10342366395555,2.13678724400706,6.35259141478947,6.43383479592888,3.98235415019888,3.8844901784797,2.11626489875326,5.46954731292105,4.72483028609236,3.99665692327106,8.01127708821486,6.18007340111759,4.63446591900138,4.10847785316561,5.27093042874994,4.12542172992747,3.40439605753788,1.44048875225048,2.45781499187234,4.07240366560025,3.90148514013002,2.85390108163313,3.1264313914403,3.65357938937519,6.8054795338476,21.183207086382,7.93902232997863,7.25499512942512,8.88054346827481,7.47880269109133,9.54978752025092,10.9974402829191,5.53813589596716,15.0194494628513,16.232733675796,8.04908785056568,10.926477114813,19.4019510714832,17.4968611482912,25.394377225924,7.47905091972963,6.57771825921193,6.35719879500349,11.4560474161814,4.9032079005076,4.87966721104437,8.8564379473877,9.827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| |||
|short_description=p1@Rffl | |||
}} |
Revision as of 21:09, 12 September 2013
Short description: | p1@Rffl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rffl_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 26bp_to_ENSMUST00000071152, ENSMUST00000108169, ENSMUST00000108173, NM_001007465, NM_001164569, NM_001164571, uc007knj.2, uc007knk.2, uc007knl.2_5end |
EntrezGene: | Rffl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
abdomen element | 4.83e-10 | 49 |
abdominal segment element | 4.83e-10 | 49 |
abdominal segment of trunk | 4.83e-10 | 49 |
abdomen | 4.83e-10 | 49 |
digestive tract diverticulum | 1.55e-09 | 23 |
sac | 1.55e-09 | 23 |
liver | 2.77e-09 | 22 |
epithelial sac | 2.77e-09 | 22 |
digestive gland | 2.77e-09 | 22 |
epithelium of foregut-midgut junction | 2.77e-09 | 22 |
anatomical boundary | 2.77e-09 | 22 |
hepatobiliary system | 2.77e-09 | 22 |
foregut-midgut junction | 2.77e-09 | 22 |
hepatic diverticulum | 2.77e-09 | 22 |
liver primordium | 2.77e-09 | 22 |
septum transversum | 2.77e-09 | 22 |
liver bud | 2.77e-09 | 22 |
mesenchyme | 4.53e-09 | 61 |
entire embryonic mesenchyme | 4.53e-09 | 61 |
exocrine gland | 5.34e-09 | 25 |
exocrine system | 5.34e-09 | 25 |
foregut | 1.41e-08 | 80 |
subdivision of trunk | 3.21e-08 | 66 |
endoderm-derived structure | 1.30e-07 | 118 |
endoderm | 1.30e-07 | 118 |
presumptive endoderm | 1.30e-07 | 118 |
unilaminar epithelium | 1.89e-07 | 66 |
trunk | 3.81e-07 | 90 |
subdivision of digestive tract | 3.99e-07 | 114 |
digestive system | 4.02e-07 | 116 |
digestive tract | 4.02e-07 | 116 |
primitive gut | 4.02e-07 | 116 |
endo-epithelium | 5.94e-07 | 69 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.