FFCP PHASE1:Mm9::chr11:69413509..69413520,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=303|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:69413509..69413520,-|id=chr11:69413509..69413520,-|ontology_enrichment_celltype=CL:0002453!8.17e-12!8;CL:0000333!4.60e-09!10;CL:0000095!4.60e-09!10;CL:0000243!4.60e-09!10;CL:0000123!4.60e-09!10;CL:0000125!4.60e-09!10;CL:0000030!4.60e-09!10;CL:0000339!4.60e-09!10;CL:0000128!6.74e-09!6;CL:0000126!6.74e-09!6;CL:0000127!6.74e-09!6|ontology_enrichment_celltype_v019_2=CL:0002610,2.19e-29,3;CL:0002614,4.93e-14,3;CL:0002319,5.69e-11,43;CL:0000221,1.02e-10,44;CL:0000133,1.02e-10,44;CL:0000117,1.05e-10,23;CL:0000337,1.05e-10,23;CL:0000540,1.71e-07,33;CL:0000047,1.71e-07,33;CL:0000031,1.71e-07,33;CL:0000404,1.71e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.50e-15!102;UBERON:0000924!6.50e-15!102;UBERON:0006601!6.50e-15!102;UBERON:0001017!1.26e-14!73;UBERON:0005743!1.26e-14!73;UBERON:0000033!2.60e-14!63;UBERON:0000073!5.68e-14!75;UBERON:0001016!5.68e-14!75;UBERON:0000955!1.14e-12!50;UBERON:0006238!1.14e-12!50;UBERON:0002346!1.59e-12!71;UBERON:0003075!1.59e-12!71;UBERON:0007284!1.59e-12!71;UBERON:0002616!7.61e-12!49;UBERON:0001049!7.89e-12!52;UBERON:0005068!7.89e-12!52;UBERON:0006241!7.89e-12!52;UBERON:0007135!7.89e-12!52;UBERON:0003076!1.60e-11!12;UBERON:0003057!1.60e-11!12;UBERON:0002298!2.15e-09!6;UBERON:0004733!4.43e-09!6;UBERON:0004732!4.43e-09!6;UBERON:0002028!4.43e-09!6;UBERON:0007277!4.43e-09!6;UBERON:0007811!7.47e-09!86;UBERON:0000153!4.74e-08!94;UBERON:0003056!2.64e-07!49;UBERON:0002950!5.76e-07!4;UBERON:0001891!5.76e-07!4;UBERON:0009616!5.76e-07!4|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.19e-29,3;UBERON:0002275,2.19e-29,3;UBERON:0002038,4.93e-14,3;UBERON:0009663,4.93e-14,3;UBERON:0009661,4.93e-14,3;UBERON:0000125,4.93e-14,3;UBERON:0002308,4.93e-14,3;UBERON:0002950,9.05e-11,4;UBERON:0001891,9.05e-11,4;UBERON:0009616,9.05e-11,4;UBERON:0010286,9.05e-11,4;UBERON:0001017,1.45e-10,73;UBERON:0001016,2.82e-10,75;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.659058548203415,0.777719596297134,0.279972843250725,1.43752564364972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,2.30530983192933,0,0,0,0,0.883474163806454,0,0,0,1.10115880999389,1.14918604276669,1.84327839907492,0,0,0,0.558365998002762,1.12552522006336,2.44477196442896,0.294628585473668,0.854230084794618,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,1.75668478206928,0.83778682725382,0,0,0,0,0.599162557619291,0.457500602818626,0,0.347648640384553,0,0.41557608911912,0,0,0,0,0.420883711772948,0,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0,0.258703370739016,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,0.642202359951168,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0.164140899745061,0,1.29797711407357,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0,0.117357238645754,0.39061315453185,0.419437377702843,0.241584120826006,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.68741272937475,0,0.755393897389701,0.675022500231806,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0,0,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0.231867835620421|short_description=p@chr11:69413509..69413520,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=303 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:69413509..69413520,- | |||
|id=chr11:69413509..69413520,- | |||
|ontology_enrichment_celltype=CL:0002453!8.17e-12!8;CL:0000333!4.60e-09!10;CL:0000095!4.60e-09!10;CL:0000243!4.60e-09!10;CL:0000123!4.60e-09!10;CL:0000125!4.60e-09!10;CL:0000030!4.60e-09!10;CL:0000339!4.60e-09!10;CL:0000128!6.74e-09!6;CL:0000126!6.74e-09!6;CL:0000127!6.74e-09!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,2.19e-29,3;CL:0002614,4.93e-14,3;CL:0002319,5.69e-11,43;CL:0000221,1.02e-10,44;CL:0000133,1.02e-10,44;CL:0000117,1.05e-10,23;CL:0000337,1.05e-10,23;CL:0000540,1.71e-07,33;CL:0000047,1.71e-07,33;CL:0000031,1.71e-07,33;CL:0000404,1.71e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.50e-15!102;UBERON:0000924!6.50e-15!102;UBERON:0006601!6.50e-15!102;UBERON:0001017!1.26e-14!73;UBERON:0005743!1.26e-14!73;UBERON:0000033!2.60e-14!63;UBERON:0000073!5.68e-14!75;UBERON:0001016!5.68e-14!75;UBERON:0000955!1.14e-12!50;UBERON:0006238!1.14e-12!50;UBERON:0002346!1.59e-12!71;UBERON:0003075!1.59e-12!71;UBERON:0007284!1.59e-12!71;UBERON:0002616!7.61e-12!49;UBERON:0001049!7.89e-12!52;UBERON:0005068!7.89e-12!52;UBERON:0006241!7.89e-12!52;UBERON:0007135!7.89e-12!52;UBERON:0003076!1.60e-11!12;UBERON:0003057!1.60e-11!12;UBERON:0002298!2.15e-09!6;UBERON:0004733!4.43e-09!6;UBERON:0004732!4.43e-09!6;UBERON:0002028!4.43e-09!6;UBERON:0007277!4.43e-09!6;UBERON:0007811!7.47e-09!86;UBERON:0000153!4.74e-08!94;UBERON:0003056!2.64e-07!49;UBERON:0002950!5.76e-07!4;UBERON:0001891!5.76e-07!4;UBERON:0009616!5.76e-07!4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.19e-29,3;UBERON:0002275,2.19e-29,3;UBERON:0002038,4.93e-14,3;UBERON:0009663,4.93e-14,3;UBERON:0009661,4.93e-14,3;UBERON:0000125,4.93e-14,3;UBERON:0002308,4.93e-14,3;UBERON:0002950,9.05e-11,4;UBERON:0001891,9.05e-11,4;UBERON:0009616,9.05e-11,4;UBERON:0010286,9.05e-11,4;UBERON:0001017,1.45e-10,73;UBERON:0001016,2.82e-10,75;UBERON:0004121,4.90e-08,95;UBERON:0000924,4.90e-08,95;UBERON:0006601,4.90e-08,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.659058548203415,0.777719596297134,0.279972843250725,1.43752564364972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,2.30530983192933,0,0,0,0,0.883474163806454,0,0,0,1.10115880999389,1.14918604276669,1.84327839907492,0,0,0,0.558365998002762,1.12552522006336,2.44477196442896,0.294628585473668,0.854230084794618,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,1.75668478206928,0.83778682725382,0,0,0,0,0.599162557619291,0.457500602818626,0,0.347648640384553,0,0.41557608911912,0,0,0,0,0.420883711772948,0,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0,0.258703370739016,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0.146199987425332,0.219550115291051,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275936746304732,0.642202359951168,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0.164140899745061,0,1.29797711407357,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0,0.117357238645754,0.39061315453185,0.419437377702843,0.241584120826006,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.68741272937475,0,0.755393897389701,0.675022500231806,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0,0,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0.231867835620421 | |||
|short_description=p@chr11:69413509..69413520,- | |||
}} |
Revision as of 20:36, 12 September 2013
Short description: | p@chr11:69413509..69413520, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:69413509..69413520, - |
Coexpression cluster: | MCL_coexpression_mm9:303 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 2.19e-29 | 3 |
neuron of the substantia nigra | 4.93e-14 | 3 |
neural cell | 5.69e-11 | 43 |
ectodermal cell | 1.02e-10 | 44 |
neurectodermal cell | 1.02e-10 | 44 |
CNS neuron (sensu Vertebrata) | 1.05e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.05e-10 | 23 |
neuron | 1.71e-07 | 33 |
neuronal stem cell | 1.71e-07 | 33 |
neuroblast | 1.71e-07 | 33 |
electrically signaling cell | 1.71e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 2.19e-29 | 3 |
reticular formation | 2.19e-29 | 3 |
substantia nigra | 4.93e-14 | 3 |
telencephalic nucleus | 4.93e-14 | 3 |
midbrain nucleus | 4.93e-14 | 3 |
neural nucleus | 4.93e-14 | 3 |
nucleus of brain | 4.93e-14 | 3 |
regional part of midbrain | 9.05e-11 | 4 |
midbrain | 9.05e-11 | 4 |
presumptive midbrain | 9.05e-11 | 4 |
midbrain neural tube | 9.05e-11 | 4 |
central nervous system | 1.45e-10 | 73 |
nervous system | 2.82e-10 | 75 |
ectoderm-derived structure | 4.90e-08 | 95 |
ectoderm | 4.90e-08 | 95 |
presumptive ectoderm | 4.90e-08 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.