FFCP PHASE1:Hg19::chr2:45166428..45166437,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-90bp_to_ENST00000437916_5end|coexpression_cluster_id=C369|description=CAGE_peak_4_at_ENST00000437916_5end|id=chr2:45166428..45166437,-|ontology_enrichment_celltype=CL:0000064!2.08e-36!3;CL:0005012!2.08e-36!3;CL:0000067!2.08e-36!3;CL:0002304!2.08e-36!3;CL:0002586!7.30e-17!3;CL:0000075!2.12e-15!27;CL:0000149!6.84e-13!4;CL:0000306!9.20e-13!4;CL:0002222!9.20e-13!4;CL:0002224!9.20e-13!4;CL:0000710!1.02e-09!20;CL:0000147!3.96e-08!14;CL:0000325!1.81e-07!39;CL:0002549!3.28e-07!2|ontology_enrichment_celltype_v019=CL:0000064;7.35e-18;3!CL:0000067;7.35e-18;3!CL:0005012;7.35e-18;3!CL:0002304;7.35e-18;3!CL:0002586;1.03e-17;3!CL:0000306;9.39e-14;4!CL:0002222;9.39e-14;4!CL:0002224;9.39e-14;4!CL:0000149;1.21e-13;4!CL:0000075;1.98e-08;27|ontology_enrichment_celltype_v019_2=CL:0000064,8.00e-18,3;CL:0000067,8.00e-18,3;CL:0005012,8.00e-18,3;CL:0002304,8.00e-18,3;CL:0002586,1.12e-17,3;CL:0000306,8.82e-14,4;CL:0002222,8.82e-14,4;CL:0002224,8.82e-14,4;CL:0000149,1.29e-13,4;CL:0000075,1.98e-08,27|ontology_enrichment_development_v019=UBERON:0003056;1.03e-17;3|ontology_enrichment_disease=DOID:0060060!5.38e-13!1;DOID:0060061!5.38e-13!1;DOID:8691!5.38e-13!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007625!4.18e-52!11;UBERON:0000970!7.75e-47!20;UBERON:0002104!1.45e-44!21;UBERON:0000020!1.29e-40!23;UBERON:0000019!4.05e-39!19;UBERON:0000047!4.05e-39!19;UBERON:0004088!4.05e-39!19;UBERON:0003072!4.05e-39!19;UBERON:0003071!4.05e-39!19;UBERON:0004128!4.05e-39!19;UBERON:0001032!6.91e-39!24;UBERON:0004456!6.91e-39!24;UBERON:0001778!2.08e-36!3;UBERON:0001775!2.08e-36!3;UBERON:0001456!2.49e-35!21;UBERON:0000488!1.69e-27!4;UBERON:0005085!2.19e-25!29;UBERON:0000966!4.12e-22!5;UBERON:0005388!4.12e-22!5;UBERON:0001802!4.12e-22!5;UBERON:0001801!3.59e-21!14;UBERON:0002203!1.45e-18!6;UBERON:0001768!1.45e-18!6;UBERON:0003056!7.98e-18!61;UBERON:0002200!1.31e-17!11;UBERON:0006876!1.31e-17!11;UBERON:0001781!7.30e-17!3;UBERON:0001782!7.30e-17!3;UBERON:0005424!7.30e-17!3;UBERON:0001444!5.03e-15!48;UBERON:0003112!6.82e-13!1;UBERON:0000032!6.82e-13!1;UBERON:0005253!6.82e-13!1;UBERON:0003128!6.82e-13!1;UBERON:0002241!6.82e-13!1;UBERON:0001703!6.82e-13!1;UBERON:0004761!6.82e-13!1;UBERON:0009617!6.82e-13!1;UBERON:0010077!9.20e-13!4;UBERON:0005389!9.20e-13!4;UBERON:0000484!9.20e-13!4;UBERON:0002546!9.20e-13!4;UBERON:0000965!9.20e-13!4;UBERON:0001803!9.20e-13!4;UBERON:0003073!9.20e-13!4;UBERON:0005426!9.20e-13!4;UBERON:0003075!2.42e-12!86;UBERON:0007284!2.42e-12!86;UBERON:0000033!5.30e-12!123;UBERON:0002346!9.63e-12!90;UBERON:0000153!2.24e-11!129;UBERON:0007811!2.24e-11!129;UBERON:0003947!3.28e-07!2;UBERON:0005629!3.28e-07!2;UBERON:0005358!3.28e-07!2;UBERON:0001886!3.28e-07!2;UBERON:0004086!3.28e-07!2;UBERON:0005282!3.28e-07!2;UBERON:0005281!3.28e-07!2;UBERON:0001876!3.48e-07!2;UBERON:0001873!4.69e-07!2;UBERON:0010122!4.69e-07!2;UBERON:0000063!5.47e-07!97;UBERON:0004121!7.49e-07!169;UBERON:0000076!8.12e-07!8|ontology_enrichment_uberon_v019=UBERON:0000019;3.83e-42;19!UBERON:0000047;3.83e-42;19!UBERON:0004088;3.83e-42;19!UBERON:0010230;3.83e-42;19!UBERON:0007625;4.36e-41;11!UBERON:0000966;4.05e-40;5!UBERON:0005388;4.05e-40;5!UBERON:0001802;4.05e-40;5!UBERON:0000970;4.28e-40;20!UBERON:0002104;3.06e-38;21!UBERON:0001456;3.06e-38;21!UBERON:0000020;5.16e-35;23!UBERON:0001032;1.33e-33;24!UBERON:0004456;1.33e-33;24!UBERON:0001778;7.35e-18;3!UBERON:0001775;7.35e-18;3!UBERON:0001781;1.03e-17;3!UBERON:0001782;1.03e-17;3!UBERON:0001801;2.95e-15;14!UBERON:0010371;3.84e-14;31!UBERON:0010077;9.39e-14;4!UBERON:0005389;9.39e-14;4!UBERON:0000488;9.39e-14;4!UBERON:0000484;9.39e-14;4!UBERON:0000965;9.39e-14;4!UBERON:0001803;9.39e-14;4!UBERON:0001444;7.92e-13;48!UBERON:0000033;2.21e-11;50!UBERON:0000153;6.75e-11;54!UBERON:0002203;1.27e-09;6!UBERON:0001768;1.27e-09;6!UBERON:0002200;1.27e-09;6!UBERON:0007811;1.94e-08;52|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.67e-41,11;UBERON:0000019,4.28e-40,20;UBERON:0000047,4.28e-40,20;UBERON:0010312,4.28e-40,20;UBERON:0004088,4.28e-40,20;UBERON:0010230,4.28e-40,20;UBERON:0003072,4.28e-40,20;UBERON:0004128,4.28e-40,20;UBERON:0003071,4.28e-40,20;UBERON:0000970,3.06e-38,21;UBERON:0002104,3.06e-38,21;UBERON:0001456,1.49e-36,22;UBERON:0000966,1.17e-33,6;UBERON:0005388,1.17e-33,6;UBERON:0001802,1.17e-33,6;UBERON:0000020,1.33e-33,24;UBERON:0001032,1.33e-33,24;UBERON:0004456,1.33e-33,24;UBERON:0005085,2.93e-26,31;UBERON:0001778,8.00e-18,3;UBERON:0001775,8.00e-18,3;UBERON:0001782,1.12e-17,3;UBERON:0005424,1.12e-17,3;UBERON:0001444,5.55e-17,49;UBERON:0001801,2.95e-15,14;UBERON:0000033,5.62e-15,56;UBERON:0010077,8.82e-14,4;UBERON:0005389,8.82e-14,4;UBERON:0000484,8.82e-14,4;UBERON:0002546,8.82e-14,4;UBERON:0000965,8.82e-14,4;UBERON:0001803,8.82e-14,4;UBERON:0003073,8.82e-14,4;UBERON:0005426,8.82e-14,4;UBERON:0000488,1.00e-13,4;UBERON:0001781,1.29e-13,4;UBERON:0000153,1.29e-13,62;UBERON:0007811,1.29e-13,62;UBERON:0003056,1.29e-13,61;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0002203,1.32e-09,6;UBERON:0001768,1.32e-09,6;UBERON:0002200,1.32e-09,6;UBERON:0010371,2.22e-08,104;UBERON:0000076,1.49e-07,8;UBERON:0010314,8.99e-07,132|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17430079477356,0.665188192387692,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55046890945169,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@ENST00000437916}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-90bp_to_ENST00000437916_5end | |||
|coexpression_cluster_id=C369 | |||
|description=CAGE_peak_4_at_ENST00000437916_5end | |||
|id=chr2:45166428..45166437,- | |||
|ontology_enrichment_celltype=CL:0000064!2.08e-36!3;CL:0005012!2.08e-36!3;CL:0000067!2.08e-36!3;CL:0002304!2.08e-36!3;CL:0002586!7.30e-17!3;CL:0000075!2.12e-15!27;CL:0000149!6.84e-13!4;CL:0000306!9.20e-13!4;CL:0002222!9.20e-13!4;CL:0002224!9.20e-13!4;CL:0000710!1.02e-09!20;CL:0000147!3.96e-08!14;CL:0000325!1.81e-07!39;CL:0002549!3.28e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000064;7.35e-18;3!CL:0000067;7.35e-18;3!CL:0005012;7.35e-18;3!CL:0002304;7.35e-18;3!CL:0002586;1.03e-17;3!CL:0000306;9.39e-14;4!CL:0002222;9.39e-14;4!CL:0002224;9.39e-14;4!CL:0000149;1.21e-13;4!CL:0000075;1.98e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.00e-18,3;CL:0000067,8.00e-18,3;CL:0005012,8.00e-18,3;CL:0002304,8.00e-18,3;CL:0002586,1.12e-17,3;CL:0000306,8.82e-14,4;CL:0002222,8.82e-14,4;CL:0002224,8.82e-14,4;CL:0000149,1.29e-13,4;CL:0000075,1.98e-08,27 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.03e-17;3 | |||
|ontology_enrichment_disease=DOID:0060060!5.38e-13!1;DOID:0060061!5.38e-13!1;DOID:8691!5.38e-13!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!4.18e-52!11;UBERON:0000970!7.75e-47!20;UBERON:0002104!1.45e-44!21;UBERON:0000020!1.29e-40!23;UBERON:0000019!4.05e-39!19;UBERON:0000047!4.05e-39!19;UBERON:0004088!4.05e-39!19;UBERON:0003072!4.05e-39!19;UBERON:0003071!4.05e-39!19;UBERON:0004128!4.05e-39!19;UBERON:0001032!6.91e-39!24;UBERON:0004456!6.91e-39!24;UBERON:0001778!2.08e-36!3;UBERON:0001775!2.08e-36!3;UBERON:0001456!2.49e-35!21;UBERON:0000488!1.69e-27!4;UBERON:0005085!2.19e-25!29;UBERON:0000966!4.12e-22!5;UBERON:0005388!4.12e-22!5;UBERON:0001802!4.12e-22!5;UBERON:0001801!3.59e-21!14;UBERON:0002203!1.45e-18!6;UBERON:0001768!1.45e-18!6;UBERON:0003056!7.98e-18!61;UBERON:0002200!1.31e-17!11;UBERON:0006876!1.31e-17!11;UBERON:0001781!7.30e-17!3;UBERON:0001782!7.30e-17!3;UBERON:0005424!7.30e-17!3;UBERON:0001444!5.03e-15!48;UBERON:0003112!6.82e-13!1;UBERON:0000032!6.82e-13!1;UBERON:0005253!6.82e-13!1;UBERON:0003128!6.82e-13!1;UBERON:0002241!6.82e-13!1;UBERON:0001703!6.82e-13!1;UBERON:0004761!6.82e-13!1;UBERON:0009617!6.82e-13!1;UBERON:0010077!9.20e-13!4;UBERON:0005389!9.20e-13!4;UBERON:0000484!9.20e-13!4;UBERON:0002546!9.20e-13!4;UBERON:0000965!9.20e-13!4;UBERON:0001803!9.20e-13!4;UBERON:0003073!9.20e-13!4;UBERON:0005426!9.20e-13!4;UBERON:0003075!2.42e-12!86;UBERON:0007284!2.42e-12!86;UBERON:0000033!5.30e-12!123;UBERON:0002346!9.63e-12!90;UBERON:0000153!2.24e-11!129;UBERON:0007811!2.24e-11!129;UBERON:0003947!3.28e-07!2;UBERON:0005629!3.28e-07!2;UBERON:0005358!3.28e-07!2;UBERON:0001886!3.28e-07!2;UBERON:0004086!3.28e-07!2;UBERON:0005282!3.28e-07!2;UBERON:0005281!3.28e-07!2;UBERON:0001876!3.48e-07!2;UBERON:0001873!4.69e-07!2;UBERON:0010122!4.69e-07!2;UBERON:0000063!5.47e-07!97;UBERON:0004121!7.49e-07!169;UBERON:0000076!8.12e-07!8 | |||
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|short_description=p4@ENST00000437916 | |||
}} |
Revision as of 18:44, 12 September 2013
Short description: | p4@ENST00000437916 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ENST00000437916_5end |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | -90bp_to_ENST00000437916_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.00e-18 | 3 |
ciliated epithelial cell | 8.00e-18 | 3 |
multi-ciliated epithelial cell | 8.00e-18 | 3 |
non-pigmented ciliary epithelial cell | 8.00e-18 | 3 |
retinal pigment epithelial cell | 1.12e-17 | 3 |
crystallin accumulating cell | 8.82e-14 | 4 |
vertebrate lens cell | 8.82e-14 | 4 |
lens epithelial cell | 8.82e-14 | 4 |
visual pigment cell | 1.29e-13 | 4 |
columnar/cuboidal epithelial cell | 1.98e-08 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.