FFCP PHASE1:Hg19::chr2:31560820..31560859,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4221|description=CAGE_peak_at_chr2:31560820..31560859,-|id=chr2:31560820..31560859,-|ontology_enrichment_celltype=CL:0000548!2.36e-12!679;CL:0000004!2.36e-12!679;CL:0000255!2.36e-12!679;CL:0000012!4.32e-12!682;CL:0000057!2.98e-11!75;CL:0000055!5.50e-11!180;CL:0002371!8.49e-11!591;CL:0002620!1.14e-10!23;CL:0000144!6.96e-10!625;CL:0000220!2.65e-09!246;CL:0002076!2.68e-09!43;CL:0000003!2.98e-09!722;CL:0002321!4.53e-09!248;CL:0002159!1.24e-08!13;CL:0000197!1.93e-07!6;CL:0000098!1.93e-07!6;CL:0002167!1.93e-07!6;CL:0000066!3.09e-07!254;CL:0002077!4.42e-07!33;CL:0002551!6.80e-07!6;CL:0000244!7.16e-07!4;CL:0000731!7.16e-07!4|ontology_enrichment_celltype_v019=CL:0000244;7.63e-21;4!CL:0000731;7.63e-21;4!CL:0002327;1.69e-11;4!CL:0002159;1.66e-08;14!CL:0002166;1.92e-07;3|ontology_enrichment_celltype_v019_2=CL:0000244,6.78e-21,4;CL:0000731,6.78e-21,4;CL:0002327,1.58e-11,4;CL:0002159,1.56e-08,14;CL:0002166,2.06e-07,3;CL:0000066,2.98e-07,253|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:120!9.10e-09!27;DOID:1749!9.44e-09!14;DOID:2394!3.80e-08!14;DOID:193!7.80e-08!29|ontology_enrichment_disease_v019=DOID:1749;6.86e-09;14|ontology_enrichment_disease_v019_2=DOID:1749,8.61e-09,14|ontology_enrichment_uberon=UBERON:0003102!1.54e-22!95;UBERON:0002097!5.47e-15!40;UBERON:0002199!2.23e-13!45;UBERON:0002416!2.23e-13!45;UBERON:0000486!3.18e-13!82;UBERON:0000914!1.47e-11!83;UBERON:0002329!1.47e-11!83;UBERON:0003077!1.47e-11!83;UBERON:0003059!1.47e-11!83;UBERON:0007282!1.47e-11!83;UBERON:0009618!1.47e-11!83;UBERON:0007285!1.47e-11!83;UBERON:0005256!3.72e-10!143;UBERON:0000165!1.04e-09!28;UBERON:0000930!1.04e-09!28;UBERON:0005910!1.24e-08!6;UBERON:0004290!3.13e-08!70;UBERON:0002067!7.59e-08!9;UBERON:0004016!7.59e-08!9;UBERON:0010083!7.59e-08!9;UBERON:0000365!1.17e-07!5;UBERON:0000475!1.55e-07!365|ontology_enrichment_uberon_v019=UBERON:0000365;1.06e-16;5!UBERON:0005910;6.19e-14;6!UBERON:0001911;1.69e-11;4!UBERON:0000486;2.58e-10;12!UBERON:0011137;4.20e-07;11!UBERON:0010323;4.20e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000365,9.64e-17,5;UBERON:0005910,5.73e-14,6;UBERON:0001911,1.58e-11,4;UBERON:0005333,1.58e-11,4;UBERON:0008425,1.58e-11,4;UBERON:0005311,1.58e-11,4;UBERON:0003102,4.65e-10,99;UBERON:0010188,1.06e-07,6;UBERON:0002539,1.06e-07,6;UBERON:0008816,1.06e-07,6;UBERON:0010323,5.83e-07,11|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.791300934685361,0,0,0,1.80808358407193,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,1.05927344650575,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0.937285727335186,0.312160076830321,1.71141546463335,0.298897361103602,0.587172493218824,0.485618833104395,0.421352420106746,0.61246251376468,1.96534907698829,0.206651562351531,0,0,0,0,1.0100166837244,0.750711119231785,1.10825646193673,0,0.30648779579902,0.150238058906597,0,0.538168907066586,0.213557388818567,0.635795703478686,0,0.824420233907511,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0.339121184620975,0.966304265816484,1.36373060295417,0.573609190778008,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53650399572076,2.24803506515239,0.301586917234893,0.370353780634118,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,3.19166043577833,1.27597587518148,6.80644772541647,1.16253575405585,1.53353071666084,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.387815147273333,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,1.78428988797162,0.630809660135739,0.937131319941706,0,0,0,0,0.184369168541703,1.12948698808508,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.246381468041427,0.519254429183621,0.116210378459959,0,2.80709058424599,0.736647911487171,0.114814448164607,0.182091168006717,0.131124414959424,0,0.693138033939733,0.784349769176855,0,0.422206515571503,0,0,0.215915916102139,0,0.541892875087706,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0,0.0915694648183434,0,0.574265537996172,2.60024098414608,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0,0.330569830721956,0.960950336825531,0.893288987462089,0,0,0.31481234683064,0,0.30803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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4221 | |||
|description=CAGE_peak_at_chr2:31560820..31560859,- | |||
|id=chr2:31560820..31560859,- | |||
|ontology_enrichment_celltype=CL:0000548!2.36e-12!679;CL:0000004!2.36e-12!679;CL:0000255!2.36e-12!679;CL:0000012!4.32e-12!682;CL:0000057!2.98e-11!75;CL:0000055!5.50e-11!180;CL:0002371!8.49e-11!591;CL:0002620!1.14e-10!23;CL:0000144!6.96e-10!625;CL:0000220!2.65e-09!246;CL:0002076!2.68e-09!43;CL:0000003!2.98e-09!722;CL:0002321!4.53e-09!248;CL:0002159!1.24e-08!13;CL:0000197!1.93e-07!6;CL:0000098!1.93e-07!6;CL:0002167!1.93e-07!6;CL:0000066!3.09e-07!254;CL:0002077!4.42e-07!33;CL:0002551!6.80e-07!6;CL:0000244!7.16e-07!4;CL:0000731!7.16e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000244;7.63e-21;4!CL:0000731;7.63e-21;4!CL:0002327;1.69e-11;4!CL:0002159;1.66e-08;14!CL:0002166;1.92e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,6.78e-21,4;CL:0000731,6.78e-21,4;CL:0002327,1.58e-11,4;CL:0002159,1.56e-08,14;CL:0002166,2.06e-07,3;CL:0000066,2.98e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!9.10e-09!27;DOID:1749!9.44e-09!14;DOID:2394!3.80e-08!14;DOID:193!7.80e-08!29 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.86e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.61e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.54e-22!95;UBERON:0002097!5.47e-15!40;UBERON:0002199!2.23e-13!45;UBERON:0002416!2.23e-13!45;UBERON:0000486!3.18e-13!82;UBERON:0000914!1.47e-11!83;UBERON:0002329!1.47e-11!83;UBERON:0003077!1.47e-11!83;UBERON:0003059!1.47e-11!83;UBERON:0007282!1.47e-11!83;UBERON:0009618!1.47e-11!83;UBERON:0007285!1.47e-11!83;UBERON:0005256!3.72e-10!143;UBERON:0000165!1.04e-09!28;UBERON:0000930!1.04e-09!28;UBERON:0005910!1.24e-08!6;UBERON:0004290!3.13e-08!70;UBERON:0002067!7.59e-08!9;UBERON:0004016!7.59e-08!9;UBERON:0010083!7.59e-08!9;UBERON:0000365!1.17e-07!5;UBERON:0000475!1.55e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.06e-16;5!UBERON:0005910;6.19e-14;6!UBERON:0001911;1.69e-11;4!UBERON:0000486;2.58e-10;12!UBERON:0011137;4.20e-07;11!UBERON:0010323;4.20e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,9.64e-17,5;UBERON:0005910,5.73e-14,6;UBERON:0001911,1.58e-11,4;UBERON:0005333,1.58e-11,4;UBERON:0008425,1.58e-11,4;UBERON:0005311,1.58e-11,4;UBERON:0003102,4.65e-10,99;UBERON:0010188,1.06e-07,6;UBERON:0002539,1.06e-07,6;UBERON:0008816,1.06e-07,6;UBERON:0010323,5.83e-07,11 | |||
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|short_description=p@chr2:31560820..31560859,- | |||
}} |
Revision as of 18:19, 12 September 2013
Short description: | p@chr2:31560820..31560859, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:31560820..31560859, - |
Coexpression cluster: | C4221_epidermoid_large_Urothelial_Mammary_squamous_Mallassezderived_pagetoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 6.78e-21 | 4 |
urothelial cell | 6.78e-21 | 4 |
mammary gland epithelial cell | 1.58e-11 | 4 |
general ecto-epithelial cell | 1.56e-08 | 14 |
epithelial cell of Malassez | 2.06e-07 | 3 |
epithelial cell | 2.98e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
urothelium | 9.64e-17 | 5 |
transitional epithelium | 5.73e-14 | 6 |
mammary gland | 1.58e-11 | 4 |
mammary bud | 1.58e-11 | 4 |
mammary ridge | 1.58e-11 | 4 |
mammary placode | 1.58e-11 | 4 |
surface structure | 4.65e-10 | 99 |
protuberance | 1.06e-07 | 6 |
pharyngeal arch | 1.06e-07 | 6 |
embryonic head | 1.06e-07 | 6 |
cranial skeletal system | 5.83e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.61e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.