FFCP PHASE1:Mm9::chr11:101329452..101329463,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11858|HGNC=|MCL_coexpression_id=20|UniProt=Q9QYM5|association_with_transcript=-25bp_to_ENSMUST00000001347_5end|description=CAGE_peak_4_at_Rnd2_5end|id=chr11:101329452..101329463,+|ontology_enrichment_celltype=CL:0000221!1.44e-12!44;CL:0000133!1.44e-12!44;CL:0002319!4.74e-12!43;CL:0000540!2.10e-11!33;CL:0000047!2.10e-11!33;CL:0000031!2.10e-11!33;CL:0000404!2.10e-11!33;CL:0000117!6.83e-10!23;CL:0000337!6.83e-10!23;CL:0002321!2.58e-09!70;CL:0000220!2.58e-09!70;CL:0000055!3.59e-09!50;CL:0000393!8.42e-09!39;CL:0000211!8.42e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.49e-16,23;CL:0000337,1.49e-16,23;CL:0000221,6.84e-13,44;CL:0000133,6.84e-13,44;CL:0000540,1.19e-12,33;CL:0000047,1.19e-12,33;CL:0000031,1.19e-12,33;CL:0000404,1.19e-12,33;CL:0002321,3.19e-12,70;CL:0002319,5.39e-12,43;CL:0000393,6.75e-10,39;CL:0000211,6.75e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.65e-24!73;UBERON:0005743!8.65e-24!73;UBERON:0000073!3.10e-23!75;UBERON:0001016!3.10e-23!75;UBERON:0004121!3.58e-18!102;UBERON:0000924!3.58e-18!102;UBERON:0006601!3.58e-18!102;UBERON:0001049!3.77e-17!52;UBERON:0005068!3.77e-17!52;UBERON:0006241!3.77e-17!52;UBERON:0007135!3.77e-17!52;UBERON:0002346!1.74e-16!71;UBERON:0003075!1.74e-16!71;UBERON:0007284!1.74e-16!71;UBERON:0000033!5.27e-16!63;UBERON:0000955!9.37e-16!50;UBERON:0006238!9.37e-16!50;UBERON:0002616!2.76e-15!49;UBERON:0002020!5.69e-11!34;UBERON:0003056!6.05e-11!49;UBERON:0003080!1.12e-10!40;UBERON:0002780!4.42e-10!39;UBERON:0001890!4.42e-10!39;UBERON:0006240!4.42e-10!39;UBERON:0007811!1.85e-08!86;UBERON:0002791!3.79e-08!29;UBERON:0003528!3.79e-08!29;UBERON:0001893!3.79e-08!29;UBERON:0003076!7.03e-08!12;UBERON:0003057!7.03e-08!12;UBERON:0000153!4.25e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-21,73;UBERON:0001016,7.86e-21,75;UBERON:0000073,1.50e-17,54;UBERON:0001049,2.08e-15,52;UBERON:0005068,2.08e-15,52;UBERON:0006241,2.08e-15,52;UBERON:0007135,2.08e-15,52;UBERON:0004121,2.76e-15,95;UBERON:0000924,2.76e-15,95;UBERON:0006601,2.76e-15,95;UBERON:0002346,4.20e-13,64;UBERON:0003075,4.20e-13,64;UBERON:0007284,4.20e-13,64;UBERON:0003076,3.83e-12,12;UBERON:0003057,3.83e-12,12;UBERON:0002020,9.67e-12,34;UBERON:0010371,1.66e-11,73;UBERON:0000955,3.00e-10,47;UBERON:0006238,3.00e-10,47;UBERON:0002240,4.24e-10,6;UBERON:0005174,4.24e-10,6;UBERON:0001137,4.24e-10,6;UBERON:0002616,1.51e-09,46;UBERON:0001948,1.88e-08,5;UBERON:0002315,1.88e-08,5;UBERON:0002950,9.14e-08,4;UBERON:0001891,9.14e-08,4;UBERON:0009616,9.14e-08,4;UBERON:0010286,9.14e-08,4;UBERON:0000473,1.04e-07,14;UBERON:0010314,1.67e-07,92;UBERON:0003135,4.62e-07,15;UBERON:0003080,4.85e-07,40;UBERON:0003528,6.02e-07,29;UBERON:0002791,6.02e-07,29;UBERON:0001893,6.02e-07,29;UBERON:0011216,7.31e-07,194|phase1_expression=0.960893082628764,0.348975407639361,1.36499771816861,2.11724947914781,2.00358291978539,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.850432901510698,0,0.261199789138935,0.319984845586813,0,2.8711598205751,0,0.215471232685889,0.760093677825496,0,0.221730510655305,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.439372365468944,0,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0,0.286533439938757,0,1.61853168687678,0,2.53532561402472,0,0.889294796111139,0.449949858640699,0.988866362566974,0.7104801149461,1.19840044207362,2.68952813725088,1.55534418462716,1.08004750665353,2.52389953621658,5.42736870367227,3.97563373712904,0.489963196859816,0.670918297127655,0,4.40463523997555,4.72443150915195,4.91540906419979,1.05509030184155,0.914876436024097,0.52091337055676,4.4669279840221,6.75315132038016,6.26472815884921,2.35702868378934,2.13557521198654,2.42319279572891,0.151452386666368,0.226714680320357,0,0,1.3599426674155,0.539703191637817,0,0.448026887097336,0.140444420131752,0.511290967734173,0.519572009205738,0.70667914902068,1.69012103732017,1.28326477414318,5.09610479413291,7.11066703153331,0.216491041011214,0,0,0.34255163915718,0,0,0.520455980298408,0,0.230615497256059,0,0.23517741427141,0.376999773989026,0.247194967734374,0,0,0,0,0,0,1.46390398505774,1.04723353406728,0.255457055208591,0,0,0,5.24267237916879,2.74500361691176,0.628271760564322,1.39059456153821,1.02286182932132,6.2336413367868,3.73154905055843,0,0.124406970610093,0.252722758433675,0.210441855886474,0.390361328888111,0.919608417733892,0,0.452114453507145,0.476255494059295,0.512454881139399,0.937017245597288,0.258703370739016,0.431135985865684,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0.398068533636986,0,0,0,0.621377317606506,0.234526059981096,0.36012412292203,0.473489471170421,0,0,0.232533944750408,0,0,0,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,1.26173969138476,2.05809224758569,1.65209391491899,0.793351699990633,0.426576501070468,0,0.128867461322093,0.403367049246685,0.22237804384487,0,0.474529061544512,0.164698954724011,0,0.1989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| ||
|EntrezGene=11858 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q9QYM5 | |||
|association_with_transcript=-25bp_to_ENSMUST00000001347_5end | |||
|description=CAGE_peak_4_at_Rnd2_5end | |||
|id=chr11:101329452..101329463,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.44e-12!44;CL:0000133!1.44e-12!44;CL:0002319!4.74e-12!43;CL:0000540!2.10e-11!33;CL:0000047!2.10e-11!33;CL:0000031!2.10e-11!33;CL:0000404!2.10e-11!33;CL:0000117!6.83e-10!23;CL:0000337!6.83e-10!23;CL:0002321!2.58e-09!70;CL:0000220!2.58e-09!70;CL:0000055!3.59e-09!50;CL:0000393!8.42e-09!39;CL:0000211!8.42e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.49e-16,23;CL:0000337,1.49e-16,23;CL:0000221,6.84e-13,44;CL:0000133,6.84e-13,44;CL:0000540,1.19e-12,33;CL:0000047,1.19e-12,33;CL:0000031,1.19e-12,33;CL:0000404,1.19e-12,33;CL:0002321,3.19e-12,70;CL:0002319,5.39e-12,43;CL:0000393,6.75e-10,39;CL:0000211,6.75e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.65e-24!73;UBERON:0005743!8.65e-24!73;UBERON:0000073!3.10e-23!75;UBERON:0001016!3.10e-23!75;UBERON:0004121!3.58e-18!102;UBERON:0000924!3.58e-18!102;UBERON:0006601!3.58e-18!102;UBERON:0001049!3.77e-17!52;UBERON:0005068!3.77e-17!52;UBERON:0006241!3.77e-17!52;UBERON:0007135!3.77e-17!52;UBERON:0002346!1.74e-16!71;UBERON:0003075!1.74e-16!71;UBERON:0007284!1.74e-16!71;UBERON:0000033!5.27e-16!63;UBERON:0000955!9.37e-16!50;UBERON:0006238!9.37e-16!50;UBERON:0002616!2.76e-15!49;UBERON:0002020!5.69e-11!34;UBERON:0003056!6.05e-11!49;UBERON:0003080!1.12e-10!40;UBERON:0002780!4.42e-10!39;UBERON:0001890!4.42e-10!39;UBERON:0006240!4.42e-10!39;UBERON:0007811!1.85e-08!86;UBERON:0002791!3.79e-08!29;UBERON:0003528!3.79e-08!29;UBERON:0001893!3.79e-08!29;UBERON:0003076!7.03e-08!12;UBERON:0003057!7.03e-08!12;UBERON:0000153!4.25e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-21,73;UBERON:0001016,7.86e-21,75;UBERON:0000073,1.50e-17,54;UBERON:0001049,2.08e-15,52;UBERON:0005068,2.08e-15,52;UBERON:0006241,2.08e-15,52;UBERON:0007135,2.08e-15,52;UBERON:0004121,2.76e-15,95;UBERON:0000924,2.76e-15,95;UBERON:0006601,2.76e-15,95;UBERON:0002346,4.20e-13,64;UBERON:0003075,4.20e-13,64;UBERON:0007284,4.20e-13,64;UBERON:0003076,3.83e-12,12;UBERON:0003057,3.83e-12,12;UBERON:0002020,9.67e-12,34;UBERON:0010371,1.66e-11,73;UBERON:0000955,3.00e-10,47;UBERON:0006238,3.00e-10,47;UBERON:0002240,4.24e-10,6;UBERON:0005174,4.24e-10,6;UBERON:0001137,4.24e-10,6;UBERON:0002616,1.51e-09,46;UBERON:0001948,1.88e-08,5;UBERON:0002315,1.88e-08,5;UBERON:0002950,9.14e-08,4;UBERON:0001891,9.14e-08,4;UBERON:0009616,9.14e-08,4;UBERON:0010286,9.14e-08,4;UBERON:0000473,1.04e-07,14;UBERON:0010314,1.67e-07,92;UBERON:0003135,4.62e-07,15;UBERON:0003080,4.85e-07,40;UBERON:0003528,6.02e-07,29;UBERON:0002791,6.02e-07,29;UBERON:0001893,6.02e-07,29;UBERON:0011216,7.31e-07,194 | |||
|phase1_expression=0.960893082628764,0.348975407639361,1.36499771816861,2.11724947914781,2.00358291978539,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0.850432901510698,0,0.261199789138935,0.319984845586813,0,2.8711598205751,0,0.215471232685889,0.760093677825496,0,0.221730510655305,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.439372365468944,0,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0,0.286533439938757,0,1.61853168687678,0,2.53532561402472,0,0.889294796111139,0.449949858640699,0.988866362566974,0.7104801149461,1.19840044207362,2.68952813725088,1.55534418462716,1.08004750665353,2.52389953621658,5.42736870367227,3.97563373712904,0.489963196859816,0.670918297127655,0,4.40463523997555,4.72443150915195,4.91540906419979,1.05509030184155,0.914876436024097,0.52091337055676,4.4669279840221,6.75315132038016,6.26472815884921,2.35702868378934,2.13557521198654,2.42319279572891,0.151452386666368,0.226714680320357,0,0,1.3599426674155,0.539703191637817,0,0.448026887097336,0.140444420131752,0.511290967734173,0.519572009205738,0.70667914902068,1.69012103732017,1.28326477414318,5.09610479413291,7.11066703153331,0.216491041011214,0,0,0.34255163915718,0,0,0.520455980298408,0,0.230615497256059,0,0.23517741427141,0.376999773989026,0.247194967734374,0,0,0,0,0,0,1.46390398505774,1.04723353406728,0.255457055208591,0,0,0,5.24267237916879,2.74500361691176,0.628271760564322,1.39059456153821,1.02286182932132,6.2336413367868,3.73154905055843,0,0.124406970610093,0.252722758433675,0.210441855886474,0.390361328888111,0.919608417733892,0,0.452114453507145,0.476255494059295,0.512454881139399,0.937017245597288,0.258703370739016,0.431135985865684,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0.398068533636986,0,0,0,0.621377317606506,0.234526059981096,0.36012412292203,0.473489471170421,0,0,0.232533944750408,0,0,0,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,1.26173969138476,2.05809224758569,1.65209391491899,0.793351699990633,0.426576501070468,0,0.128867461322093,0.403367049246685,0.22237804384487,0,0.474529061544512,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.864552199498777,0,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.140271639780637,0.189709611372772,0.147610147979602,0.156998727841375,0.123397163921801,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0.358794827043824,1.92977408545347,0,0.189491411770485,0.162964976442026,0.339490171550376,0,0.167506257441816,0.238043640886014,0,0.157635144106191,0.8858587585951,0.159454768657487,0.163863314715738,0,0.144649058581512,1.50791283939272,0,0,0,6.10092241953609,7.61875962849321,0.163934945376675,0,0.94652465824877,1.17131623288992,1.29254038639679,0.477937595905104,0.668396022247182,0.849229592366497,0.404810701674894,0.584511715822624,0,1.28528526568723,0.567760340833074,0.35613120733451,0,0.164970122972535,0,0.242780636154981,0.604647113929502,0.188605079755898,0,0.307435147943927,0.516856586336442,0,0,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.388076051348264,0.643011105094777,0.354680467284547,0.713475270408282,0.822745103010605,0.608929898229199,0,0.21183207086382,0,0,0.161464426695906,0.180938774784468,0,0.164140899745061,0.291480836629851,10.3838169125885,0,0,0.185194527369712,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.324016022465404,0,0,0,0.0826534557253359,0.26175594198403,0,0,1.69107881605257,1.34564891439581,1.98550188548517,1.16670713006429,1.29159823477731,1.18269287843545,1.17357238645754,1.0416350787516,2.09718688851422,1.44950472495604,0,0,0.202725215290164,0.205421914329655,0,0,0,0.240390899039938,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,0.564751842617067,0.920650473014354,2.29158205375759,0.343706364687375,0.685082519770642,1.5107877947794,1.35004500046361,0.900642406448441,0.453142408984205,0,0.207574695168353,0.399024873401031,0.682934423016537,0,0.628839487883947,1.10306105070008,0,0.618105171716683,0.64183841918363,0.252697211763798,0.760437899670719,0.188626341386076,0.280924522409647,0.448176066834085,0.287177344778066,0,0.463537303779422,0,0,0.735994600671987,0.342869252385415,0.354951612318675,0.476872379894642,0.145346416632329,0.188218760830661,0.169229215783353,0.182927972872773,0,0.814824683075171,0.561142271657738,0.593175090620871,0.29551344712669,0,0.464810523557898,0.192906610981141,0.749431733813838,0.233931608445408,0.214871054048298,0.57386499620653,0,0 | |||
|short_description=p4@Rnd2 | |||
}} |
Revision as of 18:15, 12 September 2013
Short description: | p4@Rnd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rnd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -25bp_to_ENSMUST00000001347_5end |
EntrezGene: | Rnd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.49e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.49e-16 | 23 |
ectodermal cell | 6.84e-13 | 44 |
neurectodermal cell | 6.84e-13 | 44 |
neuron | 1.19e-12 | 33 |
neuronal stem cell | 1.19e-12 | 33 |
neuroblast | 1.19e-12 | 33 |
electrically signaling cell | 1.19e-12 | 33 |
embryonic cell | 3.19e-12 | 70 |
neural cell | 5.39e-12 | 43 |
electrically responsive cell | 6.75e-10 | 39 |
electrically active cell | 6.75e-10 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.