FFCP PHASE1:Hg19::chr2:234398493..234398513,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55230|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20069|TSSclassifier=S|UniProt=|association_with_transcript=1bp_to_ENST00000496298_5end|coexpression_cluster_id=C4198|description=CAGE_peak_3_at_USP40_5end|id=chr2:234398493..234398513,-|ontology_enrichment_celltype=CL:0000077!5.99e-13!19;CL:0000220!1.41e-07!246;CL:0002321!2.21e-07!248;CL:0000244!5.34e-07!4;CL:0000731!5.34e-07!4|ontology_enrichment_celltype_v019=CL:0000077;5.68e-25;19!CL:0000244;2.53e-15;4!CL:0000731;2.53e-15;4!CL:0000349;4.99e-13;19!CL:0002097;8.55e-09;2!CL:0000317;6.09e-08;2!CL:1000448;6.09e-08;2!CL:0002308;6.09e-08;2!CL:0002140;6.09e-08;2!CL:0002536;1.01e-07;2|ontology_enrichment_celltype_v019_2=CL:0000077,3.44e-25,19;CL:0000244,3.21e-15,4;CL:0000731,3.21e-15,4;CL:0000349,6.39e-13,19;CL:0000066,3.21e-10,253;CL:0000076,2.72e-09,63;CL:0002097,8.57e-09,2;CL:0000317,8.20e-08,2;CL:1000448,8.20e-08,2;CL:0002308,8.20e-08,2;CL:0002140,8.20e-08,2;CL:0002536,9.75e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000365!2.28e-08!5;UBERON:0000486!4.00e-07!82;UBERON:0005631!7.87e-07!14;UBERON:0000158!7.87e-07!14;UBERON:0005910!8.12e-07!6|ontology_enrichment_uberon_v019=UBERON:0000365;1.07e-18;5!UBERON:0005910;1.60e-15;6!UBERON:0000486;4.42e-14;12!UBERON:0000478;5.74e-10;24!UBERON:0005631;3.56e-08;10!UBERON:0000158;3.56e-08;10!UBERON:0002419;6.09e-08;2!UBERON:0007771;6.09e-08;2!UBERON:0003297;6.09e-08;2!UBERON:0001821;6.09e-08;2!UBERON:0003487;6.09e-08;2!UBERON:0001820;6.09e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.20e-18,5;UBERON:0005910,1.75e-15,6;UBERON:0005631,7.43e-11,14;UBERON:0000158,7.43e-11,14;UBERON:0000478,6.93e-10,24;UBERON:0003124,6.07e-08,7;UBERON:0002419,8.20e-08,2;UBERON:0007771,8.20e-08,2;UBERON:0003297,8.20e-08,2;UBERON:0001821,8.20e-08,2;UBERON:0003487,8.20e-08,2;UBERON:0001820,8.20e-08,2;UBERON:0005089,8.20e-08,2;UBERON:0005088,8.20e-08,2|phase1_expression=1.81678379270557,0.214100523890983,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0,0,0.982935746006035,0.697801167972428,2.18441372130172,1.58260186937072,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,2.409647350226,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0.795285947051099,0,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0.496971951695318,0,0,0,0.354668382198357,0,0,0.24666754841716,0.622422070799533,0.808264032418128,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0.169560592310488,1.54608682530637,3.27295344709002,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.548751427043128,2.24803506515239,0.804231779293047,0.0925884451585296,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0.93733833986777,3.02367830757947,1.27597587518148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,3.10252117818667,0,0,0,0,0,0,0.266422179016099,0,0,2.46972101034231,0,0,0,2.71295439353627,3.48613383440118,0.399891964728228,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.178428988797162,0.946214490203608,2.81139395982512,0,0,0,0,0,0,0,0,0,0,0,0,3.32870879020994,1.5119514666484,2.72918588600655,1.07423381301644,0.280660094433074,0.384417447767103,0,0,2.96836132889982,0,1.06537035187876,0.164254312027618,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,3.25030123018261,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,1.65284915360978,0.384380134730212,0.127612712494584,0.30347334256665,0,0,0,0,0.532306030317022,0,0,1.28812398067792,0,0.949138274156178,0.38126038784765,0,0,0.318203247925937,0,0.179872457583315,0,0,1.61745985258653,0,0.421258456238981,0,0.243713489631284,1.05650146756755,0,0,0,0.551365343546124,1.32687795048244,0.876901770507525,0,0,0.405820753925408,0,0,0.860468113224309,2.25972794330179,1.07001315444375,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0,8.17960208075337,3.36942951335251,5.76459199597678,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0.921482106297696,0,0,3.22795244566427,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,5.35527662480906,0,0,0,0.638002319463839,2.28993983504656,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0.802577647298789,0.234264445725339,0,1.56531695145672,0,0,0,0,0.189559738885464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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55230 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20069 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000496298_5end | |||
|coexpression_cluster_id=C4198 | |||
|description=CAGE_peak_3_at_USP40_5end | |||
|id=chr2:234398493..234398513,- | |||
|ontology_enrichment_celltype=CL:0000077!5.99e-13!19;CL:0000220!1.41e-07!246;CL:0002321!2.21e-07!248;CL:0000244!5.34e-07!4;CL:0000731!5.34e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000077;5.68e-25;19!CL:0000244;2.53e-15;4!CL:0000731;2.53e-15;4!CL:0000349;4.99e-13;19!CL:0002097;8.55e-09;2!CL:0000317;6.09e-08;2!CL:1000448;6.09e-08;2!CL:0002308;6.09e-08;2!CL:0002140;6.09e-08;2!CL:0002536;1.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,3.44e-25,19;CL:0000244,3.21e-15,4;CL:0000731,3.21e-15,4;CL:0000349,6.39e-13,19;CL:0000066,3.21e-10,253;CL:0000076,2.72e-09,63;CL:0002097,8.57e-09,2;CL:0000317,8.20e-08,2;CL:1000448,8.20e-08,2;CL:0002308,8.20e-08,2;CL:0002140,8.20e-08,2;CL:0002536,9.75e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!2.28e-08!5;UBERON:0000486!4.00e-07!82;UBERON:0005631!7.87e-07!14;UBERON:0000158!7.87e-07!14;UBERON:0005910!8.12e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.07e-18;5!UBERON:0005910;1.60e-15;6!UBERON:0000486;4.42e-14;12!UBERON:0000478;5.74e-10;24!UBERON:0005631;3.56e-08;10!UBERON:0000158;3.56e-08;10!UBERON:0002419;6.09e-08;2!UBERON:0007771;6.09e-08;2!UBERON:0003297;6.09e-08;2!UBERON:0001821;6.09e-08;2!UBERON:0003487;6.09e-08;2!UBERON:0001820;6.09e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.20e-18,5;UBERON:0005910,1.75e-15,6;UBERON:0005631,7.43e-11,14;UBERON:0000158,7.43e-11,14;UBERON:0000478,6.93e-10,24;UBERON:0003124,6.07e-08,7;UBERON:0002419,8.20e-08,2;UBERON:0007771,8.20e-08,2;UBERON:0003297,8.20e-08,2;UBERON:0001821,8.20e-08,2;UBERON:0003487,8.20e-08,2;UBERON:0001820,8.20e-08,2;UBERON:0005089,8.20e-08,2;UBERON:0005088,8.20e-08,2 | |||
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|short_description=p3@USP40 | |||
}} |
Revision as of 17:28, 12 September 2013
Short description: | p3@USP40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_USP40_5end |
Coexpression cluster: | C4198_mesothelioma_mucinous_cholangiocellular_Urothelial_transitionalcell_anaplastic_pleomorphic |
Association with transcript: | 1bp_to_ENST00000496298_5end |
EntrezGene: | USP40 |
HGNC: | 20069 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 3.44e-25 | 19 |
transitional epithelial cell | 3.21e-15 | 4 |
urothelial cell | 3.21e-15 | 4 |
extraembryonic cell | 6.39e-13 | 19 |
epithelial cell | 3.21e-10 | 253 |
squamous epithelial cell | 2.72e-09 | 63 |
cortical cell of adrenal gland | 8.57e-09 | 2 |
sebum secreting cell | 8.20e-08 | 2 |
epithelial cell of sweat gland | 8.20e-08 | 2 |
epithelial cell of skin gland | 8.20e-08 | 2 |
acinar cell of sebaceous gland | 8.20e-08 | 2 |
amniotic epithelial cell | 9.75e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.20e-18 | 5 |
transitional epithelium | 1.75e-15 | 6 |
extraembryonic membrane | 7.43e-11 | 14 |
membranous layer | 7.43e-11 | 14 |
extraembryonic structure | 6.93e-10 | 24 |
chorion | 6.07e-08 | 7 |
skin gland | 8.20e-08 | 2 |
epidermis gland | 8.20e-08 | 2 |
gland of integumental system | 8.20e-08 | 2 |
sebaceous gland | 8.20e-08 | 2 |
skin sebaceous gland | 8.20e-08 | 2 |
sweat gland | 8.20e-08 | 2 |
sweat gland placode | 8.20e-08 | 2 |
sebaceous gland placode | 8.20e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.