FFCP PHASE1:Hg19::chr2:224856546..224856559,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C354|description=CAGE_peak_at_chr2:224856546..224856559,-|id=chr2:224856546..224856559,-|ontology_enrichment_celltype=CL:0000055!1.11e-19!180;CL:0000057!2.24e-18!75;CL:0002620!3.18e-09!23;CL:0002334!4.57e-07!12|ontology_enrichment_celltype_v019=CL:0002334;3.67e-13;12!CL:0000153;2.42e-10;9!CL:0000447;2.42e-10;9!CL:1000306;2.87e-10;4!CL:0002547;2.87e-10;4!CL:0000135;1.74e-09;3!CL:0000388;1.74e-09;3!CL:0000499;2.31e-09;28!CL:0002579;3.98e-09;3!CL:0002620;5.33e-09;23!CL:0002541;7.53e-09;3!CL:0002595;2.64e-08;5!CL:0000327;7.55e-08;15!CL:0000057;1.05e-07;73!CL:0000138;2.57e-07;6|ontology_enrichment_celltype_v019_2=CL:0000057,9.71e-26,76;CL:0002334,6.21e-13,12;CL:0000153,2.13e-10,9;CL:0000447,2.13e-10,9;CL:1000306,2.58e-10,4;CL:0002547,2.58e-10,4;CL:0000135,1.73e-09,3;CL:0000388,1.73e-09,3;CL:0000499,2.09e-09,28;CL:0000134,2.32e-09,354;CL:0000048,2.66e-09,427;CL:0002620,4.45e-09,23;CL:0002579,4.45e-09,3;CL:0000723,5.73e-09,433;CL:0002320,6.34e-09,361;CL:0002541,7.18e-09,3;CL:0000034,1.54e-08,441;CL:0002595,3.56e-08,5;CL:0000219,5.97e-08,386;CL:0000327,7.02e-08,15;CL:0000058,2.31e-07,6;CL:0000138,2.31e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;3.13e-09;3!DOID:127;3.13e-09;3!DOID:17;1.75e-08;5!DOID:450;1.75e-08;5!DOID:66;1.75e-08;5!DOID:423;1.75e-08;5!DOID:0080000;1.75e-08;5!DOID:11722;1.75e-08;5!DOID:0060072;5.42e-07;4|ontology_enrichment_disease_v019_2=DOID:0060084,3.23e-09,3;DOID:127,3.23e-09,3;DOID:17,1.22e-08,5;DOID:450,1.22e-08,5;DOID:66,1.22e-08,5;DOID:423,1.22e-08,5;DOID:0080000,1.22e-08,5;DOID:11722,1.22e-08,5;DOID:0060072,5.54e-07,4|ontology_enrichment_uberon=UBERON:0003102!5.46e-11!95;UBERON:0002097!4.44e-08!40;UBERON:0002199!3.90e-07!45;UBERON:0002416!3.90e-07!45|ontology_enrichment_uberon_v019=UBERON:0004457;1.40e-10;9!UBERON:0000042;1.40e-10;9!UBERON:0004797;2.87e-10;4!UBERON:0000415;2.87e-10;4!UBERON:0007240;2.87e-10;4!UBERON:0005742;2.87e-10;4!UBERON:0005734;2.87e-10;4!UBERON:0004664;2.87e-10;4!UBERON:0004663;2.87e-10;4!UBERON:0007846;1.74e-09;3!UBERON:0000043;1.74e-09;3!UBERON:0007845;1.74e-09;3!UBERON:0003124;7.53e-09;3!UBERON:0000920;7.53e-09;3!UBERON:0003834;2.64e-08;5!UBERON:0001533;2.64e-08;5!UBERON:0003688;1.49e-07;6!UBERON:0002358;1.49e-07;6!UBERON:0003684;1.49e-07;6!UBERON:0001178;1.49e-07;6!UBERON:0005406;4.88e-07;2!UBERON:0002384;6.71e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0000415,2.58e-10,4;UBERON:0007240,2.58e-10,4;UBERON:0005742,2.58e-10,4;UBERON:0005734,2.58e-10,4;UBERON:0004664,2.58e-10,4;UBERON:0004663,2.58e-10,4;UBERON:0007846,1.73e-09,3;UBERON:0000043,1.73e-09,3;UBERON:0007845,1.73e-09,3;UBERON:0002384,5.79e-09,371;UBERON:0000920,7.18e-09,3;UBERON:0003834,3.56e-08,5;UBERON:0001533,3.56e-08,5;UBERON:0004457,1.12e-07,12;UBERON:0000042,1.12e-07,12;UBERON:0003688,1.77e-07,6;UBERON:0002358,1.77e-07,6;UBERON:0003684,1.77e-07,6;UBERON:0001178,1.77e-07,6;UBERON:0004923,3.36e-07,66;UBERON:0005406,4.89e-07,2|phase1_expression=0.363356758541113,1.92690471501885,0.422863212287913,2.00146596706261,0.446961094427288,16.574431957907,0,0,0,0,0,0,0,0.74259811776028,0,0,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97583067623023,0,3.0417768981773,1.5905718941022,9.73269740605272,0,0.221729397462564,0.175669571386252,0.0654895377488563,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.44246708221105,1.77282716330412,1.19168262731897,13.4813211751942,1.41867352879343,1.68203280042692,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0,0,0.597794722207204,0.469737994575059,0.161872944368132,0.140450806702248,0.61246251376468,0.61417158655884,0.103325781175765,1.18800285728205,2.96720315134268,0,0,0.336672227908132,0.375355559615893,0.277064115484183,0,1.5324389789951,1.35214253015937,0.113432183160021,2.15267562826634,1.92201649936711,0.847727604638247,4.50136644126603,2.78241828943785,2.57640540045629,1.8611685633159,0.337552664482532,1.55899208257918,0.252433774244115,1.10459878370759,0.80823028409406,4.26011511019937,2.11579406278045,0,0.57978255948989,0,0.286804595389004,0,0,0.116193942869518,0,0,0,0,5.78916844373597,0,0,0,0,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,0.301586917234893,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0,0,0,2.26220483947312,0.901029173531752,0,0,0,0,1.68053230485111,0,0,0.531876233169741,0,0,0,0.532844358032199,0,0.542621605391443,0,0,0,0,0.30143937705958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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224856546..224856559,- | |||
|id=chr2:224856546..224856559,- | |||
|ontology_enrichment_celltype=CL:0000055!1.11e-19!180;CL:0000057!2.24e-18!75;CL:0002620!3.18e-09!23;CL:0002334!4.57e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.67e-13;12!CL:0000153;2.42e-10;9!CL:0000447;2.42e-10;9!CL:1000306;2.87e-10;4!CL:0002547;2.87e-10;4!CL:0000135;1.74e-09;3!CL:0000388;1.74e-09;3!CL:0000499;2.31e-09;28!CL:0002579;3.98e-09;3!CL:0002620;5.33e-09;23!CL:0002541;7.53e-09;3!CL:0002595;2.64e-08;5!CL:0000327;7.55e-08;15!CL:0000057;1.05e-07;73!CL:0000138;2.57e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.71e-26,76;CL:0002334,6.21e-13,12;CL:0000153,2.13e-10,9;CL:0000447,2.13e-10,9;CL:1000306,2.58e-10,4;CL:0002547,2.58e-10,4;CL:0000135,1.73e-09,3;CL:0000388,1.73e-09,3;CL:0000499,2.09e-09,28;CL:0000134,2.32e-09,354;CL:0000048,2.66e-09,427;CL:0002620,4.45e-09,23;CL:0002579,4.45e-09,3;CL:0000723,5.73e-09,433;CL:0002320,6.34e-09,361;CL:0002541,7.18e-09,3;CL:0000034,1.54e-08,441;CL:0002595,3.56e-08,5;CL:0000219,5.97e-08,386;CL:0000327,7.02e-08,15;CL:0000058,2.31e-07,6;CL:0000138,2.31e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.13e-09;3!DOID:127;3.13e-09;3!DOID:17;1.75e-08;5!DOID:450;1.75e-08;5!DOID:66;1.75e-08;5!DOID:423;1.75e-08;5!DOID:0080000;1.75e-08;5!DOID:11722;1.75e-08;5!DOID:0060072;5.42e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.23e-09,3;DOID:127,3.23e-09,3;DOID:17,1.22e-08,5;DOID:450,1.22e-08,5;DOID:66,1.22e-08,5;DOID:423,1.22e-08,5;DOID:0080000,1.22e-08,5;DOID:11722,1.22e-08,5;DOID:0060072,5.54e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003102!5.46e-11!95;UBERON:0002097!4.44e-08!40;UBERON:0002199!3.90e-07!45;UBERON:0002416!3.90e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.40e-10;9!UBERON:0000042;1.40e-10;9!UBERON:0004797;2.87e-10;4!UBERON:0000415;2.87e-10;4!UBERON:0007240;2.87e-10;4!UBERON:0005742;2.87e-10;4!UBERON:0005734;2.87e-10;4!UBERON:0004664;2.87e-10;4!UBERON:0004663;2.87e-10;4!UBERON:0007846;1.74e-09;3!UBERON:0000043;1.74e-09;3!UBERON:0007845;1.74e-09;3!UBERON:0003124;7.53e-09;3!UBERON:0000920;7.53e-09;3!UBERON:0003834;2.64e-08;5!UBERON:0001533;2.64e-08;5!UBERON:0003688;1.49e-07;6!UBERON:0002358;1.49e-07;6!UBERON:0003684;1.49e-07;6!UBERON:0001178;1.49e-07;6!UBERON:0005406;4.88e-07;2!UBERON:0002384;6.71e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,2.58e-10,4;UBERON:0007240,2.58e-10,4;UBERON:0005742,2.58e-10,4;UBERON:0005734,2.58e-10,4;UBERON:0004664,2.58e-10,4;UBERON:0004663,2.58e-10,4;UBERON:0007846,1.73e-09,3;UBERON:0000043,1.73e-09,3;UBERON:0007845,1.73e-09,3;UBERON:0002384,5.79e-09,371;UBERON:0000920,7.18e-09,3;UBERON:0003834,3.56e-08,5;UBERON:0001533,3.56e-08,5;UBERON:0004457,1.12e-07,12;UBERON:0000042,1.12e-07,12;UBERON:0003688,1.77e-07,6;UBERON:0002358,1.77e-07,6;UBERON:0003684,1.77e-07,6;UBERON:0001178,1.77e-07,6;UBERON:0004923,3.36e-07,66;UBERON:0005406,4.89e-07,2 | |||
|phase1_expression=0.363356758541113,1.92690471501885,0.422863212287913,2.00146596706261,0.446961094427288,16.574431957907,0,0,0,0,0,0,0,0.74259811776028,0,0,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97583067623023,0,3.0417768981773,1.5905718941022,9.73269740605272,0,0.221729397462564,0.175669571386252,0.0654895377488563,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.44246708221105,1.77282716330412,1.19168262731897,13.4813211751942,1.41867352879343,1.68203280042692,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0,0,0.597794722207204,0.469737994575059,0.161872944368132,0.140450806702248,0.61246251376468,0.61417158655884,0.103325781175765,1.18800285728205,2.96720315134268,0,0,0.336672227908132,0.375355559615893,0.277064115484183,0,1.5324389789951,1.35214253015937,0.113432183160021,2.15267562826634,1.92201649936711,0.847727604638247,4.50136644126603,2.78241828943785,2.57640540045629,1.8611685633159,0.337552664482532,1.55899208257918,0.252433774244115,1.10459878370759,0.80823028409406,4.26011511019937,2.11579406278045,0,0.57978255948989,0,0.286804595389004,0,0,0.116193942869518,0,0,0,0,5.78916844373597,0,0,0,0,0,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,0.301586917234893,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.179117045405697,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0,0,0,2.26220483947312,0.901029173531752,0,0,0,0,1.68053230485111,0,0,0.531876233169741,0,0,0,0.532844358032199,0,0.542621605391443,0,0,0,0,0.301439377059586,1.74306691720059,0.199945982364114,0,0,0,0,0,0,3.32997005335432,4.72595541865882,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,0,0.813795071099207,0,2.67643483195743,1.26161932027148,1.28855556491985,0.601892199455438,4.5481500811197,0,0,0.184369168541703,1.56390506042549,0,0,0,0,0,0,0,0,3.2254015016441,0.306923946576125,4.77122160536225,5.38184426873944,3.07024349440022,7.39928037260594,16.325987308949,0,1.06537035187876,0.0821271560138091,1.03850885836724,0,0,2.40607764363942,0.276242966807689,0.459257792658427,0.728364672026868,0.524497659837696,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0.650060246036521,1.6068392984416,0.096670718292122,0.154048617114644,0,0.275673144969061,0,0,0.170453254832202,0,0.826424576804891,0.192190067365106,0,0,0,5.03699754929024,0,0.308033580176089,0,0,0,0.858749320451947,0,0,0,0.255897791311334,0,0,0.78494864019923,0,0.823611089208164,0.706874414074119,0.202182481573316,0,0,0,3.1682753652067,1.05650146756755,0.136499911407986,0.848432591722276,0,0,1.32687795048244,3.5076070820301,0,0,0.202910376962704,0.30982349809975,0,0,0.491245205065606,0,0,7.59987487071591,3.29294892959902,0,0,0.192444225451024,0,0,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0.307160702099232,0,0.281338832821026,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0.139423744278603,0,0,0,0,0,6.06102203490647,1.55715908783166,15.991043280559,0,0,0.166211681900156,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0.661983911750998,0.313932918407225,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0.104602846312333,0.101998217636322,0,0,0.547621515567972,0,0.859530882839914,0,0,0.229160424011684,0,0,0,0,0,2.16179930125442,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0.643012593860077,0,0.415440338029185,0,0,0.182248669974074,0,0,0,0,1.97216073266129,0,0,0.662091970365432,0,5.42999601753713,4.32110745600634,8.81785872295405,0,0.082092520749339,0.511164065356265,0.226624183040251,0,0,0.904980694530854,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.854183854313742,0,0,0.110929051536852,0,0,0.124980407962107,1.66814029295813,0.856396000634902,0,0,0,0.298509605773748,0,1.66441758450784,1.13641803165053,0.754703705257725,0,2.51724075236616,0,1.86524640699337,0.887130899937803,0.318593534327405,0.449803112163605,0,7.4647117411354,0.53168342911599,1.04349012362347,0.300515217994437,1.14241563650639,0.406870733204662,0.181848659202559,0.214821114084977,0.464033759878494,0.398095888698616,0,0.343395705182793,1.01024846629776,0,0,0,0,0.453411851024545,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0.911579868532147,0,0,0,0,0,0.245772908753719,0,0,0.106691729694141,0,0,0,0.139879507719444,0,0.127894371303652,0,0.157265941855896,0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| |||
|short_description=p@chr2:224856546..224856559,- | |||
}} |
Revision as of 17:07, 12 September 2013
Short description: | p@chr2:224856546..224856559, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:224856546..224856559, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.71e-26 | 76 |
preadipocyte | 6.21e-13 | 12 |
GAG secreting cell | 2.13e-10 | 9 |
carbohydrate secreting cell | 2.13e-10 | 9 |
fibroblast of tunica adventitia of artery | 2.58e-10 | 4 |
fibroblast of the aortic adventitia | 2.58e-10 | 4 |
fibrocyte | 1.73e-09 | 3 |
tendon cell | 1.73e-09 | 3 |
stromal cell | 2.09e-09 | 28 |
mesenchymal cell | 2.32e-09 | 354 |
multi fate stem cell | 2.66e-09 | 427 |
skin fibroblast | 4.45e-09 | 23 |
omentum preadipocyte | 4.45e-09 | 3 |
somatic stem cell | 5.73e-09 | 433 |
connective tissue cell | 6.34e-09 | 361 |
chorionic membrane mesenchymal stem cell | 7.18e-09 | 3 |
stem cell | 1.54e-08 | 441 |
smooth muscle cell of the subclavian artery | 3.56e-08 | 5 |
motile cell | 5.97e-08 | 386 |
extracellular matrix secreting cell | 7.02e-08 | 15 |
chondroblast | 2.31e-07 | 6 |
chondrocyte | 2.31e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
artery wall | 2.58e-10 | 4 |
tunica adventitia of artery | 2.58e-10 | 4 |
adventitia | 2.58e-10 | 4 |
tunica adventitia of blood vessel | 2.58e-10 | 4 |
aorta tunica adventitia | 2.58e-10 | 4 |
aorta wall | 2.58e-10 | 4 |
dense regular connective tissue | 1.73e-09 | 3 |
tendon | 1.73e-09 | 3 |
regular connective tissue | 1.73e-09 | 3 |
connective tissue | 5.79e-09 | 371 |
egg chorion | 7.18e-09 | 3 |
thoracic segment blood vessel | 3.56e-08 | 5 |
subclavian artery | 3.56e-08 | 5 |
cavity lining | 1.12e-07 | 12 |
serous membrane | 1.12e-07 | 12 |
omentum | 1.77e-07 | 6 |
peritoneum | 1.77e-07 | 6 |
abdominal cavity | 1.77e-07 | 6 |
visceral peritoneum | 1.77e-07 | 6 |
organ component layer | 3.36e-07 | 66 |
perirenal fat | 4.89e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.23e-09 | 3 |
leiomyoma | 3.23e-09 | 3 |
musculoskeletal system disease | 1.22e-08 | 5 |
myotonic disease | 1.22e-08 | 5 |
muscle tissue disease | 1.22e-08 | 5 |
myopathy | 1.22e-08 | 5 |
muscular disease | 1.22e-08 | 5 |
myotonic dystrophy | 1.22e-08 | 5 |
benign neoplasm | 5.54e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.