FFCP PHASE1:Hg19::chr2:210798666..210798677,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1022|description=CAGE_peak_at_chr2:210798666..210798677,+|id=chr2:210798666..210798677,+|ontology_enrichment_celltype=CL:0000064!4.49e-19!3;CL:0005012!4.49e-19!3;CL:0000067!4.49e-19!3;CL:0002304!4.49e-19!3;CL:0002319!5.56e-13!25;CL:0000047!2.27e-12!8;CL:0000221!4.12e-11!71;CL:0000133!8.26e-10!59;CL:0000342!1.98e-07!1;CL:0002565!1.98e-07!1|ontology_enrichment_celltype_v019=CL:0000064;7.79e-88;3!CL:0000067;7.79e-88;3!CL:0005012;7.79e-88;3!CL:0002304;7.79e-88;3!CL:0000047;5.96e-34;2!CL:0000710;2.49e-14;20!CL:0000075;6.40e-11;27!CL:0002077;2.74e-09;34|ontology_enrichment_celltype_v019_2=CL:0000064,6.24e-88,3;CL:0000067,6.24e-88,3;CL:0005012,6.24e-88,3;CL:0002304,6.24e-88,3;CL:0000710,2.41e-14,20;CL:0000075,6.25e-11,27;CL:0000133,8.52e-11,59;CL:0000047,1.47e-09,8;CL:0000221,4.40e-09,72;CL:0002077,6.54e-09,34|ontology_enrichment_development_v019=CL:0000133;7.69e-09;59|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000488!9.03e-25!4;UBERON:0001017!3.55e-23!82;UBERON:0003075!2.99e-22!86;UBERON:0007284!2.99e-22!86;UBERON:0005743!6.29e-22!86;UBERON:0002346!4.38e-21!90;UBERON:0000073!1.70e-19!94;UBERON:0001016!1.70e-19!94;UBERON:0004121!3.48e-19!169;UBERON:0007625!3.94e-19!11;UBERON:0001778!4.49e-19!3;UBERON:0001775!4.49e-19!3;UBERON:0000924!1.27e-18!173;UBERON:0006601!1.27e-18!173;UBERON:0000153!1.98e-18!129;UBERON:0007811!1.98e-18!129;UBERON:0003056!8.74e-18!61;UBERON:0002203!1.43e-16!6;UBERON:0001768!1.43e-16!6;UBERON:0000033!6.88e-16!123;UBERON:0001801!6.54e-15!14;UBERON:0001049!5.77e-14!57;UBERON:0005068!5.77e-14!57;UBERON:0006241!5.77e-14!57;UBERON:0007135!5.77e-14!57;UBERON:0000955!7.82e-13!69;UBERON:0006238!7.82e-13!69;UBERON:0002791!5.47e-12!33;UBERON:0002020!1.32e-11!34;UBERON:0003528!1.32e-11!34;UBERON:0001893!1.32e-11!34;UBERON:0002616!2.68e-11!59;UBERON:0000019!7.85e-11!19;UBERON:0000047!7.85e-11!19;UBERON:0004088!7.85e-11!19;UBERON:0003072!7.85e-11!19;UBERON:0003071!7.85e-11!19;UBERON:0004128!7.85e-11!19;UBERON:0000970!2.93e-10!20;UBERON:0001869!9.04e-10!32;UBERON:0000956!9.31e-10!25;UBERON:0000203!9.31e-10!25;UBERON:0002104!9.64e-10!21;UBERON:0001456!9.64e-10!21;UBERON:0002780!1.98e-09!41;UBERON:0001890!1.98e-09!41;UBERON:0006240!1.98e-09!41;UBERON:0003080!3.55e-09!42;UBERON:0002200!4.43e-09!11;UBERON:0006876!4.43e-09!11;UBERON:0000200!5.97e-09!6;UBERON:0000020!7.66e-09!23;UBERON:0002771!1.75e-08!3;UBERON:0001032!1.90e-08!24;UBERON:0004456!1.90e-08!24;UBERON:0002619!3.17e-08!22;UBERON:0002506!1.98e-07!1;UBERON:0001769!1.98e-07!1;UBERON:0002038!3.82e-07!1;UBERON:0009661!3.82e-07!1;UBERON:0002363!5.14e-07!1;UBERON:0007647!5.14e-07!1;UBERON:0010115!5.14e-07!1;UBERON:0002022!6.12e-07!1;UBERON:0005085!6.92e-07!29;UBERON:0002581!8.67e-07!1;UBERON:0007023!9.39e-07!115|ontology_enrichment_uberon_v019=UBERON:0001778;7.79e-88;3!UBERON:0001775;7.79e-88;3!UBERON:0000488;2.83e-66;4!UBERON:0002203;1.09e-44;6!UBERON:0001768;1.09e-44;6!UBERON:0002200;1.09e-44;6!UBERON:0007625;5.16e-25;11!UBERON:0006876;5.16e-25;11!UBERON:0001801;6.18e-20;14!UBERON:0000019;5.09e-15;19!UBERON:0000047;5.09e-15;19!UBERON:0004088;5.09e-15;19!UBERON:0010230;5.09e-15;19!UBERON:0000970;2.49e-14;20!UBERON:0002104;1.05e-13;21!UBERON:0001456;1.05e-13;21!UBERON:0000020;1.29e-12;23!UBERON:0001032;3.86e-12;24!UBERON:0004456;3.86e-12;24!UBERON:0010371;6.09e-10;31!UBERON:0001444;4.41e-07;48|ontology_enrichment_uberon_v019_2=UBERON:0001778,6.24e-88,3;UBERON:0001775,6.24e-88,3;UBERON:0000488,2.40e-66,4;UBERON:0002203,9.76e-45,6;UBERON:0001768,9.76e-45,6;UBERON:0002200,9.76e-45,6;UBERON:0007625,4.86e-25,11;UBERON:0006876,4.86e-25,11;UBERON:0001801,5.89e-20,14;UBERON:0000019,2.41e-14,20;UBERON:0000047,2.41e-14,20;UBERON:0010312,2.41e-14,20;UBERON:0004088,2.41e-14,20;UBERON:0010230,2.41e-14,20;UBERON:0003072,2.41e-14,20;UBERON:0004128,2.41e-14,20;UBERON:0003071,2.41e-14,20;UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0001456,3.77e-13,22;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24;UBERON:0005085,1.15e-09,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738726348460727,0,0,0,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74150969775797,0.665188192387692,1.31752178539689,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0.109750285408626,0,0,0,0,0,0,0.463721619900307,0.117408694235822,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1022 | |||
|description=CAGE_peak_at_chr2:210798666..210798677,+ | |||
|id=chr2:210798666..210798677,+ | |||
|ontology_enrichment_celltype=CL:0000064!4.49e-19!3;CL:0005012!4.49e-19!3;CL:0000067!4.49e-19!3;CL:0002304!4.49e-19!3;CL:0002319!5.56e-13!25;CL:0000047!2.27e-12!8;CL:0000221!4.12e-11!71;CL:0000133!8.26e-10!59;CL:0000342!1.98e-07!1;CL:0002565!1.98e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000064;7.79e-88;3!CL:0000067;7.79e-88;3!CL:0005012;7.79e-88;3!CL:0002304;7.79e-88;3!CL:0000047;5.96e-34;2!CL:0000710;2.49e-14;20!CL:0000075;6.40e-11;27!CL:0002077;2.74e-09;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,6.24e-88,3;CL:0000067,6.24e-88,3;CL:0005012,6.24e-88,3;CL:0002304,6.24e-88,3;CL:0000710,2.41e-14,20;CL:0000075,6.25e-11,27;CL:0000133,8.52e-11,59;CL:0000047,1.47e-09,8;CL:0000221,4.40e-09,72;CL:0002077,6.54e-09,34 | |||
|ontology_enrichment_development_v019=CL:0000133;7.69e-09;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!9.03e-25!4;UBERON:0001017!3.55e-23!82;UBERON:0003075!2.99e-22!86;UBERON:0007284!2.99e-22!86;UBERON:0005743!6.29e-22!86;UBERON:0002346!4.38e-21!90;UBERON:0000073!1.70e-19!94;UBERON:0001016!1.70e-19!94;UBERON:0004121!3.48e-19!169;UBERON:0007625!3.94e-19!11;UBERON:0001778!4.49e-19!3;UBERON:0001775!4.49e-19!3;UBERON:0000924!1.27e-18!173;UBERON:0006601!1.27e-18!173;UBERON:0000153!1.98e-18!129;UBERON:0007811!1.98e-18!129;UBERON:0003056!8.74e-18!61;UBERON:0002203!1.43e-16!6;UBERON:0001768!1.43e-16!6;UBERON:0000033!6.88e-16!123;UBERON:0001801!6.54e-15!14;UBERON:0001049!5.77e-14!57;UBERON:0005068!5.77e-14!57;UBERON:0006241!5.77e-14!57;UBERON:0007135!5.77e-14!57;UBERON:0000955!7.82e-13!69;UBERON:0006238!7.82e-13!69;UBERON:0002791!5.47e-12!33;UBERON:0002020!1.32e-11!34;UBERON:0003528!1.32e-11!34;UBERON:0001893!1.32e-11!34;UBERON:0002616!2.68e-11!59;UBERON:0000019!7.85e-11!19;UBERON:0000047!7.85e-11!19;UBERON:0004088!7.85e-11!19;UBERON:0003072!7.85e-11!19;UBERON:0003071!7.85e-11!19;UBERON:0004128!7.85e-11!19;UBERON:0000970!2.93e-10!20;UBERON:0001869!9.04e-10!32;UBERON:0000956!9.31e-10!25;UBERON:0000203!9.31e-10!25;UBERON:0002104!9.64e-10!21;UBERON:0001456!9.64e-10!21;UBERON:0002780!1.98e-09!41;UBERON:0001890!1.98e-09!41;UBERON:0006240!1.98e-09!41;UBERON:0003080!3.55e-09!42;UBERON:0002200!4.43e-09!11;UBERON:0006876!4.43e-09!11;UBERON:0000200!5.97e-09!6;UBERON:0000020!7.66e-09!23;UBERON:0002771!1.75e-08!3;UBERON:0001032!1.90e-08!24;UBERON:0004456!1.90e-08!24;UBERON:0002619!3.17e-08!22;UBERON:0002506!1.98e-07!1;UBERON:0001769!1.98e-07!1;UBERON:0002038!3.82e-07!1;UBERON:0009661!3.82e-07!1;UBERON:0002363!5.14e-07!1;UBERON:0007647!5.14e-07!1;UBERON:0010115!5.14e-07!1;UBERON:0002022!6.12e-07!1;UBERON:0005085!6.92e-07!29;UBERON:0002581!8.67e-07!1;UBERON:0007023!9.39e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;7.79e-88;3!UBERON:0001775;7.79e-88;3!UBERON:0000488;2.83e-66;4!UBERON:0002203;1.09e-44;6!UBERON:0001768;1.09e-44;6!UBERON:0002200;1.09e-44;6!UBERON:0007625;5.16e-25;11!UBERON:0006876;5.16e-25;11!UBERON:0001801;6.18e-20;14!UBERON:0000019;5.09e-15;19!UBERON:0000047;5.09e-15;19!UBERON:0004088;5.09e-15;19!UBERON:0010230;5.09e-15;19!UBERON:0000970;2.49e-14;20!UBERON:0002104;1.05e-13;21!UBERON:0001456;1.05e-13;21!UBERON:0000020;1.29e-12;23!UBERON:0001032;3.86e-12;24!UBERON:0004456;3.86e-12;24!UBERON:0010371;6.09e-10;31!UBERON:0001444;4.41e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,6.24e-88,3;UBERON:0001775,6.24e-88,3;UBERON:0000488,2.40e-66,4;UBERON:0002203,9.76e-45,6;UBERON:0001768,9.76e-45,6;UBERON:0002200,9.76e-45,6;UBERON:0007625,4.86e-25,11;UBERON:0006876,4.86e-25,11;UBERON:0001801,5.89e-20,14;UBERON:0000019,2.41e-14,20;UBERON:0000047,2.41e-14,20;UBERON:0010312,2.41e-14,20;UBERON:0004088,2.41e-14,20;UBERON:0010230,2.41e-14,20;UBERON:0003072,2.41e-14,20;UBERON:0004128,2.41e-14,20;UBERON:0003071,2.41e-14,20;UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0001456,3.77e-13,22;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24;UBERON:0005085,1.15e-09,31 | |||
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|short_description=p@chr2:210798666..210798677,+ | |||
}} |
Revision as of 16:21, 12 September 2013
Short description: | p@chr2:210798666..210798677, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:210798666..210798677, + |
Coexpression cluster: | C1022_Ciliary_Lens_Astrocyte_Neural_Iris_retina_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 6.24e-88 | 3 |
ciliated epithelial cell | 6.24e-88 | 3 |
multi-ciliated epithelial cell | 6.24e-88 | 3 |
non-pigmented ciliary epithelial cell | 6.24e-88 | 3 |
neurecto-epithelial cell | 2.41e-14 | 20 |
columnar/cuboidal epithelial cell | 6.25e-11 | 27 |
neurectodermal cell | 8.52e-11 | 59 |
neuronal stem cell | 1.47e-09 | 8 |
ectodermal cell | 4.40e-09 | 72 |
ecto-epithelial cell | 6.54e-09 | 34 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 6.24e-88 | 3 |
ciliary body | 6.24e-88 | 3 |
atypical epithelium | 2.40e-66 | 4 |
vasculature of eye | 9.76e-45 | 6 |
uvea | 9.76e-45 | 6 |
vasculature of head | 9.76e-45 | 6 |
pigment epithelium of eye | 4.86e-25 | 11 |
vasculature of organ | 4.86e-25 | 11 |
anterior segment of eyeball | 5.89e-20 | 14 |
camera-type eye | 2.41e-14 | 20 |
simple eye | 2.41e-14 | 20 |
immature eye | 2.41e-14 | 20 |
ocular region | 2.41e-14 | 20 |
eyeball of camera-type eye | 2.41e-14 | 20 |
optic cup | 2.41e-14 | 20 |
optic vesicle | 2.41e-14 | 20 |
eye primordium | 2.41e-14 | 20 |
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
face | 3.77e-13 | 22 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
ectodermal placode | 1.15e-09 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.