FFCP PHASE1:Hg19::chr2:176987485..176987496,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3235|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5140|TSSclassifier=S|UniProt=P28356|association_with_transcript=72bp_to_NM_014213,uc010zex.1_5end|coexpression_cluster_id=C4149|description=CAGE_peak_3_at_HOXD9_5end|id=chr2:176987485..176987496,+|ontology_enrichment_celltype=CL:1000449!8.02e-10!16;CL:0005020!8.97e-10!6;CL:0002138!8.97e-10!6;CL:0005022!8.97e-10!6;CL:0002681!1.33e-08!13;CL:0002584!1.33e-08!13;CL:1000497!2.08e-08!18;CL:0002518!2.08e-08!18;CL:1000507!3.77e-07!12;CL:1000494!3.77e-07!12;CL:0002078!3.94e-07!44|ontology_enrichment_celltype_v019=CL:0000333;1.04e-11;5!CL:0002138;1.44e-09;6!CL:0002144;2.69e-09;3!CL:0000346;3.10e-09;3!CL:1000428;3.10e-09;3!CL:0000511;9.08e-08;1!CL:0002625;9.08e-08;1!CL:0000216;9.08e-08;1!CL:0000313;2.49e-07;1|ontology_enrichment_celltype_v019_2=CL:0005020,8.98e-10,6;CL:0002138,8.98e-10,6;CL:0005022,8.98e-10,6;CL:0002144,1.90e-09,3;CL:0000346,2.87e-09,3;CL:1000428,2.87e-09,3;CL:0000511,8.54e-08,1;CL:0002625,8.54e-08,1;CL:0000216,8.54e-08,1;CL:0002078,1.35e-07,45;CL:0000115,1.46e-07,36;CL:0000313,3.84e-07,1|ontology_enrichment_development_v019=CL:0005022;1.44e-09;6|ontology_enrichment_disease=DOID:171!1.50e-07!10;DOID:169!4.18e-07!6|ontology_enrichment_disease_v019=DOID:171;5.25e-10;10!DOID:169;7.70e-10;6!DOID:2152;2.49e-07;1|ontology_enrichment_disease_v019_2=DOID:171,7.15e-10,10;DOID:169,1.08e-09,6;DOID:2152,3.84e-07,1|ontology_enrichment_uberon=UBERON:0003887!7.58e-13!21;UBERON:0004876!1.12e-12!20;UBERON:0000080!3.33e-12!18;UBERON:0002120!3.33e-12!18;UBERON:0004875!3.33e-12!18;UBERON:0005721!3.33e-12!18;UBERON:0005754!3.33e-12!18;UBERON:0007297!3.33e-12!18;UBERON:0002113!2.41e-11!27;UBERON:0003918!2.41e-11!27;UBERON:0005095!2.41e-11!27;UBERON:0007687!2.41e-11!27;UBERON:0006555!5.05e-11!17;UBERON:0005103!5.05e-11!17;UBERON:0000083!5.05e-11!17;UBERON:0009201!5.05e-11!17;UBERON:0004819!5.05e-11!17;UBERON:0006553!5.05e-11!17;UBERON:0003074!5.05e-11!17;UBERON:0003060!5.05e-11!17;UBERON:0003886!1.39e-10!63;UBERON:0000058!2.20e-10!26;UBERON:0000489!6.25e-10!32;UBERON:0004211!8.02e-10!16;UBERON:0001285!8.02e-10!16;UBERON:0007684!8.02e-10!16;UBERON:0003220!8.02e-10!16;UBERON:0004208!8.02e-10!16;UBERON:0001473!1.51e-09!8;UBERON:0004536!1.51e-09!8;UBERON:0006558!1.51e-09!8;UBERON:0002465!4.62e-09!10;UBERON:0003064!7.44e-09!37;UBERON:0002553!9.22e-09!70;UBERON:0000013!1.12e-08!5;UBERON:0002410!1.12e-08!5;UBERON:0001225!1.33e-08!13;UBERON:0008987!1.33e-08!13;UBERON:0001008!1.99e-08!45;UBERON:0000010!7.58e-08!8;UBERON:0006554!1.25e-07!44;UBERON:0000464!1.50e-07!104;UBERON:0005904!2.19e-07!4;UBERON:0003133!3.26e-07!48;UBERON:0009773!3.77e-07!12;UBERON:0001231!3.77e-07!12;UBERON:0004810!3.77e-07!12|ontology_enrichment_uberon_v019=UBERON:0005904;2.08e-14;4!UBERON:0004909;2.05e-13;2!UBERON:0000013;1.04e-11;5!UBERON:0002410;1.04e-11;5!UBERON:0010523;2.69e-09;3!UBERON:0001915;2.69e-09;3!UBERON:0001982;2.69e-09;3!UBERON:0000412;3.10e-09;3!UBERON:0001992;3.10e-09;3!UBERON:0003135;4.64e-09;11!UBERON:0006947;5.96e-09;3!UBERON:0004054;5.96e-09;3!UBERON:0002113;8.94e-09;24!UBERON:0011143;8.94e-09;24!UBERON:0001136;9.08e-08;1!UBERON:0001343;9.08e-08;1!UBERON:0004910;9.08e-08;1!UBERON:0004813;9.08e-08;1!UBERON:0006834;2.49e-07;1!UBERON:0001000;2.49e-07;1!UBERON:0000996;2.49e-07;1!UBERON:0001301;2.49e-07;1!UBERON:0004911;2.49e-07;1!UBERON:0005352;2.49e-07;1!UBERON:0001473;2.74e-07;8!UBERON:0004536;2.74e-07;8!UBERON:0006558;2.74e-07;8!UBERON:0000489;3.66e-07;29!UBERON:0006554;6.63e-07;30!UBERON:0001008;6.63e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0005904,3.78e-14,4;UBERON:0004909,2.99e-13,2;UBERON:0000013,1.55e-11,5;UBERON:0002410,1.55e-11,5;UBERON:0002113,1.03e-10,26;UBERON:0003918,1.03e-10,26;UBERON:0011143,1.03e-10,26;UBERON:0005095,1.03e-10,26;UBERON:0007687,1.03e-10,26;UBERON:0010523,1.90e-09,3;UBERON:0001915,1.90e-09,3;UBERON:0001982,1.90e-09,3;UBERON:0000412,2.87e-09,3;UBERON:0001992,2.87e-09,3;UBERON:0006555,3.01e-09,16;UBERON:0004819,3.01e-09,16;UBERON:0004876,4.65e-09,11;UBERON:0003135,7.41e-09,11;UBERON:0000489,7.59e-09,31;UBERON:0006947,1.05e-08,3;UBERON:0004054,1.05e-08,3;UBERON:0001136,8.54e-08,1;UBERON:0001343,8.54e-08,1;UBERON:0004910,8.54e-08,1;UBERON:0005154,8.54e-08,1;UBERON:0005295,8.54e-08,1;UBERON:0004813,8.54e-08,1;UBERON:0005297,8.54e-08,1;UBERON:0005294,8.54e-08,1;UBERON:0010141,8.54e-08,1;UBERON:0005891,8.54e-08,1;UBERON:0000058,8.63e-08,19;UBERON:0006834,1.61e-07,1;UBERON:0001473,1.93e-07,8;UBERON:0004536,1.93e-07,8;UBERON:0006558,1.93e-07,8;UBERON:0000996,2.66e-07,1;UBERON:0005103,2.81e-07,8;UBERON:0000083,2.81e-07,8;UBERON:0009201,2.81e-07,8;UBERON:0006553,2.81e-07,8;UBERON:0003074,2.81e-07,8;UBERON:0003060,2.81e-07,8;UBERON:0001000,3.20e-07,1;UBERON:0005352,3.20e-07,1;UBERON:0004911,3.84e-07,1;UBERON:0001301,4.61e-07,1;UBERON:0001008,5.51e-07,48|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3235 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5140 | |||
|TSSclassifier=S | |||
|UniProt=P28356 | |||
|association_with_transcript=72bp_to_NM_014213,uc010zex.1_5end | |||
|coexpression_cluster_id=C4149 | |||
|description=CAGE_peak_3_at_HOXD9_5end | |||
|id=chr2:176987485..176987496,+ | |||
|ontology_enrichment_celltype=CL:1000449!8.02e-10!16;CL:0005020!8.97e-10!6;CL:0002138!8.97e-10!6;CL:0005022!8.97e-10!6;CL:0002681!1.33e-08!13;CL:0002584!1.33e-08!13;CL:1000497!2.08e-08!18;CL:0002518!2.08e-08!18;CL:1000507!3.77e-07!12;CL:1000494!3.77e-07!12;CL:0002078!3.94e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000333;1.04e-11;5!CL:0002138;1.44e-09;6!CL:0002144;2.69e-09;3!CL:0000346;3.10e-09;3!CL:1000428;3.10e-09;3!CL:0000511;9.08e-08;1!CL:0002625;9.08e-08;1!CL:0000216;9.08e-08;1!CL:0000313;2.49e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.98e-10,6;CL:0002138,8.98e-10,6;CL:0005022,8.98e-10,6;CL:0002144,1.90e-09,3;CL:0000346,2.87e-09,3;CL:1000428,2.87e-09,3;CL:0000511,8.54e-08,1;CL:0002625,8.54e-08,1;CL:0000216,8.54e-08,1;CL:0002078,1.35e-07,45;CL:0000115,1.46e-07,36;CL:0000313,3.84e-07,1 | |||
|ontology_enrichment_development_v019=CL:0005022;1.44e-09;6 | |||
|ontology_enrichment_disease=DOID:171!1.50e-07!10;DOID:169!4.18e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:171;5.25e-10;10!DOID:169;7.70e-10;6!DOID:2152;2.49e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:171,7.15e-10,10;DOID:169,1.08e-09,6;DOID:2152,3.84e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003887!7.58e-13!21;UBERON:0004876!1.12e-12!20;UBERON:0000080!3.33e-12!18;UBERON:0002120!3.33e-12!18;UBERON:0004875!3.33e-12!18;UBERON:0005721!3.33e-12!18;UBERON:0005754!3.33e-12!18;UBERON:0007297!3.33e-12!18;UBERON:0002113!2.41e-11!27;UBERON:0003918!2.41e-11!27;UBERON:0005095!2.41e-11!27;UBERON:0007687!2.41e-11!27;UBERON:0006555!5.05e-11!17;UBERON:0005103!5.05e-11!17;UBERON:0000083!5.05e-11!17;UBERON:0009201!5.05e-11!17;UBERON:0004819!5.05e-11!17;UBERON:0006553!5.05e-11!17;UBERON:0003074!5.05e-11!17;UBERON:0003060!5.05e-11!17;UBERON:0003886!1.39e-10!63;UBERON:0000058!2.20e-10!26;UBERON:0000489!6.25e-10!32;UBERON:0004211!8.02e-10!16;UBERON:0001285!8.02e-10!16;UBERON:0007684!8.02e-10!16;UBERON:0003220!8.02e-10!16;UBERON:0004208!8.02e-10!16;UBERON:0001473!1.51e-09!8;UBERON:0004536!1.51e-09!8;UBERON:0006558!1.51e-09!8;UBERON:0002465!4.62e-09!10;UBERON:0003064!7.44e-09!37;UBERON:0002553!9.22e-09!70;UBERON:0000013!1.12e-08!5;UBERON:0002410!1.12e-08!5;UBERON:0001225!1.33e-08!13;UBERON:0008987!1.33e-08!13;UBERON:0001008!1.99e-08!45;UBERON:0000010!7.58e-08!8;UBERON:0006554!1.25e-07!44;UBERON:0000464!1.50e-07!104;UBERON:0005904!2.19e-07!4;UBERON:0003133!3.26e-07!48;UBERON:0009773!3.77e-07!12;UBERON:0001231!3.77e-07!12;UBERON:0004810!3.77e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0005904;2.08e-14;4!UBERON:0004909;2.05e-13;2!UBERON:0000013;1.04e-11;5!UBERON:0002410;1.04e-11;5!UBERON:0010523;2.69e-09;3!UBERON:0001915;2.69e-09;3!UBERON:0001982;2.69e-09;3!UBERON:0000412;3.10e-09;3!UBERON:0001992;3.10e-09;3!UBERON:0003135;4.64e-09;11!UBERON:0006947;5.96e-09;3!UBERON:0004054;5.96e-09;3!UBERON:0002113;8.94e-09;24!UBERON:0011143;8.94e-09;24!UBERON:0001136;9.08e-08;1!UBERON:0001343;9.08e-08;1!UBERON:0004910;9.08e-08;1!UBERON:0004813;9.08e-08;1!UBERON:0006834;2.49e-07;1!UBERON:0001000;2.49e-07;1!UBERON:0000996;2.49e-07;1!UBERON:0001301;2.49e-07;1!UBERON:0004911;2.49e-07;1!UBERON:0005352;2.49e-07;1!UBERON:0001473;2.74e-07;8!UBERON:0004536;2.74e-07;8!UBERON:0006558;2.74e-07;8!UBERON:0000489;3.66e-07;29!UBERON:0006554;6.63e-07;30!UBERON:0001008;6.63e-07;30 | |||
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|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55050055501597,0.35576626268671,0.66944122552934,1.61131726843659,0.760272105718513,4.63717909341522,0.735326160691737,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280901613404497,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0.640672166455702,0,0,0.206105058476878,0.515281080091258,0.18611685633159,0,0.292311015483596,0.757301322732344,0.184099797284599,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,3.12899064659632,0,1.38134921352481,0,0.721879481669586,0,0.337169380156203,0,0.110293972732394,0.435758888184812,0,0.539325232640658,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.866198686566443,1.85194205030644,1.33177906564219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0.601892199455438,0,0,0,1.65932251687533,0,0,0,0,0,0,0,0,0,0,0,0.561320188866147,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902399225814824,0,1.56869953835371,0,0.105551628892876,1.13733384070897,0,0.431831832204279,3.08454505380579,0.541892875087706,0.501689773854853,0.764628819135115,0.831076008928724,1.34324852833307,0,0,0,0,0,0.206082023295445,0.183138929636687,0.165018999841176,0,0,3.21367859688319,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,1.41832609060762,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0.139423744278603,0.923403102045565,0,0,0,0.760531603454056,0,0.641183153813036,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0.0870592065804026,1.04836000945218,0.51595809741485,0,0,0.164230914106418,0,0.0882561266915003,0.225980740780532,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,2.60058834087354,4.77336752028483,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0.453248366080503,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0.303298235083296,0,0,0,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0.214821114084977,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0.911579868532147,0,0,0,0,0,0,0,0,0,0,0,1.47284760201473,0,0,0.639471856518258,0.862598491173454,6.44790361609175,1.20130602011215,0,0.850299680406731,1.23935764259002,1.11728983594649,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5913297769302,0.601682626794058,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0,0.39246546425257,0,0,0,0,0,0,0,0.23248285073625,0.521574816907738,0,0,0,0,0,0.354996002191696,0.170426809518315,0.846774100381858,0,0,0,1.11855431797792,0,0,0,0.102662806856247,0,0,0,0,0.237840181555137,0,0,3.01925687133347,0,0,3.29222107453066,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,1.06090177505535,0.535928260312357,0,0,0,0.23806443146374,0,0.124149428591716,0,0.12729431655633,1.0105859447911,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,1.58913877437726,0,1.33151354837103,0.201273793591026,0 | |||
|short_description=p3@HOXD9 | |||
}} |
Revision as of 14:50, 12 September 2013
Short description: | p3@HOXD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXD9_5end |
Coexpression cluster: | C4149_neuroblastoma_kidney_Endothelial_uterus_Renal_smallcell_bronchogenic |
Association with transcript: | 72bp_to_NM_014213, uc010zex.1_5end |
EntrezGene: | HOXD9 |
HGNC: | 5140 |
UniProt: | P28356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.98e-10 | 6 |
endothelial cell of lymphatic vessel | 8.98e-10 | 6 |
vascular lymphangioblast | 8.98e-10 | 6 |
capillary endothelial cell | 1.90e-09 | 3 |
hair follicle dermal papilla cell | 2.87e-09 | 3 |
stem cell of epidermis | 2.87e-09 | 3 |
androgen binding protein secreting cell | 8.54e-08 | 1 |
seminiferous tubule epithelial cell | 8.54e-08 | 1 |
Sertoli cell | 8.54e-08 | 1 |
meso-epithelial cell | 1.35e-07 | 45 |
endothelial cell | 1.46e-07 | 36 |
serous secreting cell | 3.84e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.15e-10 | 10 |
neuroendocrine tumor | 1.08e-09 | 6 |
ovary epithelial cancer | 3.84e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.