FFCP PHASE1:Hg19::chr2:176972047..176972063,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3237|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5134|TSSclassifier=S|UniProt=P31277|association_with_transcript=-20bp_to_NM_021192,uc002uki.2_5end|coexpression_cluster_id=C1885|description=CAGE_peak_7_at_HOXD11_5end|id=chr2:176972047..176972063,+|ontology_enrichment_celltype=CL:1000497!2.89e-08!18;CL:0002518!2.89e-08!18;CL:0002620!1.90e-07!23;CL:1000507!5.41e-07!12;CL:1000494!5.41e-07!12|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!1.55e-16!143;DOID:305!1.58e-12!106;DOID:14566!1.96e-09!239;DOID:162!8.20e-09!235;DOID:1749!3.61e-07!14|ontology_enrichment_disease_v019=DOID:171;3.44e-10;10!DOID:17;2.60e-07;5!DOID:450;2.60e-07;5!DOID:66;2.60e-07;5!DOID:423;2.60e-07;5!DOID:0080000;2.60e-07;5!DOID:11722;2.60e-07;5|ontology_enrichment_disease_v019_2=DOID:171,3.39e-10,10;DOID:0050687,4.59e-09,143;DOID:17,2.73e-07,5;DOID:450,2.73e-07,5;DOID:66,2.73e-07,5;DOID:423,2.73e-07,5;DOID:0080000,2.73e-07,5;DOID:11722,2.73e-07,5;DOID:14566,5.80e-07,239;DOID:305,9.81e-07,106|ontology_enrichment_uberon=UBERON:0001737!3.55e-13!9;UBERON:0000489!2.80e-11!32;UBERON:0006554!3.90e-11!44;UBERON:0001008!9.52e-11!45;UBERON:0002113!1.23e-09!27;UBERON:0003918!1.23e-09!27;UBERON:0005095!1.23e-09!27;UBERON:0007687!1.23e-09!27;UBERON:0003064!1.04e-07!37;UBERON:0004876!3.21e-07!20;UBERON:0009773!5.41e-07!12;UBERON:0001231!5.41e-07!12;UBERON:0004810!5.41e-07!12|ontology_enrichment_uberon_v019=UBERON:0002346;4.18e-10;4!UBERON:0000923;4.18e-10;4!UBERON:0010316;4.18e-10;4!UBERON:0005291;4.18e-10;4!UBERON:0000489;1.95e-09;29!UBERON:0002113;3.03e-09;24!UBERON:0011143;3.03e-09;24!UBERON:0006554;4.54e-09;30!UBERON:0001008;4.54e-09;30!UBERON:0002050;3.70e-08;5!UBERON:0005423;3.70e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0000489,9.63e-09,31;UBERON:0002113,1.82e-08,26;UBERON:0003918,1.82e-08,26;UBERON:0011143,1.82e-08,26;UBERON:0005095,1.82e-08,26;UBERON:0007687,1.82e-08,26|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,1.61450672119976,1.49490172172997,1.05965950579781,0.300091096084402,0,0,0.18611685633159,0,0.0974370051611986,1.26216887122057,0.828449087780694,0,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.01150814046861,1.92808823906786,1.32352767278873,0.871517776369625,0.949082476444386,0.539325232640658,0.98110732562673,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,1.06375246633948,2.08014873822732,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,1.50473049863859,0,0,0,1.10621501125022,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0.200506470303285,3.03867263488458,0,0,0,0.902399225814824,0.308061348417659,0,1.46139224653261,0.211103257785751,0,0,1.51141141271498,0,2.16757150035082,0.501689773854853,1.27438136522519,0,0.671624264166535,0,0,0,0,0,0,0.366277859273374,0.247528499761764,0,0,1.6068392984416,0.290012154876366,0,0,0,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539617372749944,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.545999645631943,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,2.11107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,4.96414131712666,0.344743373241465,0.583209226766509,0.347249989866585,0,0,0,0,0,0,0,0.41827123283581,1.00035336054936,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0.649165919226273,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15679180770434,4.66596861287612,0,0,0,0,0,0,0,0.587954384486266,0.34823682632161,0,0,0.19351266257817,0.365446585430928,0.574808199372465,0.0969890164884194,0.264768380074501,0,0.137041924646751,0,0,0,0,0,0,0,0,1.71594997861965,0,2.73355578243952,1.88555227693436,0,0,0,0,0,0,0,0,3.94331031418972,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.03152031398899,0.315222829196793,1.57363764404994,0,0.179287339332845,1.15149118391667,0,0,0,1.62899880526114,0,1.30634944043764,0,0,0.340776043570843,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5652351854352,0,0.380805212168795,0,0,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,1.29389773676018,12.4240094066158,0,2.88545300921843,6.80239744325385,5.4531736273961,0,0,0,6.40456598628376,0,0,0,0,0,0,0,0,0,0,0,3.89300087047543,0.917142992608395,0.231051332300676,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,1.14986184875636,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.549451649953598,0,0,0,0.431855182437243,2.8665101273223,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,12.6327310269537,0,0,0.11294608203896,0,7.397179334767,0,0,1.88126918544609,0.490296643507811,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0.178553938605658,0,0,0,0,0,0.631086248772738,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11648498388534,0.960546112899439,1.9307228228694,0,2.34640942403454,2.68931177202306,0,0,0,0|short_description=p7@HOXD11}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |||
|TSSclassifier=S | |||
|UniProt=P31277 | |||
|association_with_transcript=-20bp_to_NM_021192,uc002uki.2_5end | |||
|coexpression_cluster_id=C1885 | |||
|description=CAGE_peak_7_at_HOXD11_5end | |||
|id=chr2:176972047..176972063,+ | |||
|ontology_enrichment_celltype=CL:1000497!2.89e-08!18;CL:0002518!2.89e-08!18;CL:0002620!1.90e-07!23;CL:1000507!5.41e-07!12;CL:1000494!5.41e-07!12 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.55e-16!143;DOID:305!1.58e-12!106;DOID:14566!1.96e-09!239;DOID:162!8.20e-09!235;DOID:1749!3.61e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:171;3.44e-10;10!DOID:17;2.60e-07;5!DOID:450;2.60e-07;5!DOID:66;2.60e-07;5!DOID:423;2.60e-07;5!DOID:0080000;2.60e-07;5!DOID:11722;2.60e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.39e-10,10;DOID:0050687,4.59e-09,143;DOID:17,2.73e-07,5;DOID:450,2.73e-07,5;DOID:66,2.73e-07,5;DOID:423,2.73e-07,5;DOID:0080000,2.73e-07,5;DOID:11722,2.73e-07,5;DOID:14566,5.80e-07,239;DOID:305,9.81e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.55e-13!9;UBERON:0000489!2.80e-11!32;UBERON:0006554!3.90e-11!44;UBERON:0001008!9.52e-11!45;UBERON:0002113!1.23e-09!27;UBERON:0003918!1.23e-09!27;UBERON:0005095!1.23e-09!27;UBERON:0007687!1.23e-09!27;UBERON:0003064!1.04e-07!37;UBERON:0004876!3.21e-07!20;UBERON:0009773!5.41e-07!12;UBERON:0001231!5.41e-07!12;UBERON:0004810!5.41e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;4.18e-10;4!UBERON:0000923;4.18e-10;4!UBERON:0010316;4.18e-10;4!UBERON:0005291;4.18e-10;4!UBERON:0000489;1.95e-09;29!UBERON:0002113;3.03e-09;24!UBERON:0011143;3.03e-09;24!UBERON:0006554;4.54e-09;30!UBERON:0001008;4.54e-09;30!UBERON:0002050;3.70e-08;5!UBERON:0005423;3.70e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,9.63e-09,31;UBERON:0002113,1.82e-08,26;UBERON:0003918,1.82e-08,26;UBERON:0011143,1.82e-08,26;UBERON:0005095,1.82e-08,26;UBERON:0007687,1.82e-08,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,1.61450672119976,1.49490172172997,1.05965950579781,0.300091096084402,0,0,0.18611685633159,0,0.0974370051611986,1.26216887122057,0.828449087780694,0,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.01150814046861,1.92808823906786,1.32352767278873,0.871517776369625,0.949082476444386,0.539325232640658,0.98110732562673,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,1.06375246633948,2.08014873822732,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,1.50473049863859,0,0,0,1.10621501125022,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0.200506470303285,3.03867263488458,0,0,0,0.902399225814824,0.308061348417659,0,1.46139224653261,0.211103257785751,0,0,1.51141141271498,0,2.16757150035082,0.501689773854853,1.27438136522519,0,0.671624264166535,0,0,0,0,0,0,0.366277859273374,0.247528499761764,0,0,1.6068392984416,0.290012154876366,0,0,0,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539617372749944,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.545999645631943,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,2.11107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,4.96414131712666,0.344743373241465,0.583209226766509,0.347249989866585,0,0,0,0,0,0,0,0.41827123283581,1.00035336054936,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0.649165919226273,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15679180770434,4.66596861287612,0,0,0,0,0,0,0,0.587954384486266,0.34823682632161,0,0,0.19351266257817,0.365446585430928,0.574808199372465,0.0969890164884194,0.264768380074501,0,0.137041924646751,0,0,0,0,0,0,0,0,1.71594997861965,0,2.73355578243952,1.88555227693436,0,0,0,0,0,0,0,0,3.94331031418972,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.03152031398899,0.315222829196793,1.57363764404994,0,0.179287339332845,1.15149118391667,0,0,0,1.62899880526114,0,1.30634944043764,0,0,0.340776043570843,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5652351854352,0,0.380805212168795,0,0,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,1.29389773676018,12.4240094066158,0,2.88545300921843,6.80239744325385,5.4531736273961,0,0,0,6.40456598628376,0,0,0,0,0,0,0,0,0,0,0,3.89300087047543,0.917142992608395,0.231051332300676,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,1.14986184875636,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.549451649953598,0,0,0,0.431855182437243,2.8665101273223,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,12.6327310269537,0,0,0.11294608203896,0,7.397179334767,0,0,1.88126918544609,0.490296643507811,0.235676547101626,0,0,0.4226557275834,0,0,0,0,0.178553938605658,0,0,0,0,0,0.631086248772738,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11648498388534,0.960546112899439,1.9307228228694,0,2.34640942403454,2.68931177202306,0,0,0,0 | |||
|short_description=p7@HOXD11 | |||
}} |
Revision as of 14:49, 12 September 2013
Short description: | p7@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_HOXD11_5end |
Coexpression cluster: | C1885_neuroectodermal_nonsmall_small_neuroblastoma_embryonic_merkel_hairy |
Association with transcript: | -20bp_to_NM_021192, uc002uki.2_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | P31277 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 9.63e-09 | 31 |
kidney | 1.82e-08 | 26 |
kidney mesenchyme | 1.82e-08 | 26 |
upper urinary tract | 1.82e-08 | 26 |
kidney rudiment | 1.82e-08 | 26 |
kidney field | 1.82e-08 | 26 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.39e-10 | 10 |
cell type cancer | 4.59e-09 | 143 |
musculoskeletal system disease | 2.73e-07 | 5 |
myotonic disease | 2.73e-07 | 5 |
muscle tissue disease | 2.73e-07 | 5 |
myopathy | 2.73e-07 | 5 |
muscular disease | 2.73e-07 | 5 |
myotonic dystrophy | 2.73e-07 | 5 |
disease of cellular proliferation | 5.80e-07 | 239 |
carcinoma | 9.81e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.