FFCP PHASE1:Hg19::chr2:11052080..11052117,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3754|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6246|TSSclassifier=S|UniProt=Q9H3M0|association_with_transcript=17bp_to_ENST00000295082,NM_002236,uc002rax.2_5end|coexpression_cluster_id=C3|description=CAGE_peak_1_at_KCNF1_5end|id=chr2:11052080..11052117,+|ontology_enrichment_celltype=CL:0002319!1.66e-08!25;CL:0000047!1.19e-07!8|ontology_enrichment_celltype_v019=CL:0002319;2.94e-10;25!CL:0000128;1.11e-07;7!CL:0000126;1.11e-07;7!CL:0000127;1.11e-07;7!CL:0000540;5.87e-07;6!CL:0000404;5.87e-07;6|ontology_enrichment_celltype_v019_2=CL:0002319,2.59e-10,25;CL:0000047,3.52e-10,8;CL:0000128,8.20e-08,7;CL:0000126,8.20e-08,7;CL:0000127,8.20e-08,7;CL:0002453,8.20e-08,7;CL:0000540,6.41e-07,6;CL:0000031,6.41e-07,6;CL:0000404,6.41e-07,6|ontology_enrichment_development_v019=UBERON:0006601;4.14e-10;82!CL:0000031;5.87e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!5.47e-43!86;UBERON:0001017!7.54e-43!82;UBERON:0000073!1.10e-39!94;UBERON:0001016!1.10e-39!94;UBERON:0001049!1.84e-36!57;UBERON:0005068!1.84e-36!57;UBERON:0006241!1.84e-36!57;UBERON:0007135!1.84e-36!57;UBERON:0000955!8.27e-34!69;UBERON:0006238!8.27e-34!69;UBERON:0003075!1.46e-30!86;UBERON:0007284!1.46e-30!86;UBERON:0002616!6.50e-30!59;UBERON:0002780!6.71e-30!41;UBERON:0001890!6.71e-30!41;UBERON:0006240!6.71e-30!41;UBERON:0003080!9.35e-29!42;UBERON:0001893!2.16e-28!34;UBERON:0002346!5.83e-28!90;UBERON:0002020!8.08e-28!34;UBERON:0003528!8.08e-28!34;UBERON:0002791!1.77e-27!33;UBERON:0000153!3.72e-27!129;UBERON:0007811!3.72e-27!129;UBERON:0000033!3.94e-27!123;UBERON:0001869!4.25e-27!32;UBERON:0003056!7.64e-26!61;UBERON:0004121!4.65e-23!169;UBERON:0000924!1.04e-21!173;UBERON:0006601!1.04e-21!173;UBERON:0000956!4.19e-21!25;UBERON:0000203!4.19e-21!25;UBERON:0002619!7.91e-19!22;UBERON:0000119!1.24e-17!312;UBERON:0000483!2.08e-17!309;UBERON:0001950!3.28e-17!20;UBERON:0000481!9.41e-17!347;UBERON:0000064!2.96e-16!219;UBERON:0000477!8.79e-16!286;UBERON:0004111!8.97e-16!241;UBERON:0000025!1.17e-15!194;UBERON:0007023!1.79e-15!115;UBERON:0000475!1.07e-14!365;UBERON:0000922!9.12e-14!612;UBERON:0000468!3.11e-12!659;UBERON:0000923!1.12e-11!604;UBERON:0005291!1.12e-11!604;UBERON:0006598!1.12e-11!604;UBERON:0002532!1.12e-11!604;UBERON:0002050!1.50e-11!605;UBERON:0005423!1.50e-11!605;UBERON:0000467!4.54e-11!625;UBERON:0000480!6.06e-11!626;UBERON:0003076!8.30e-09!15;UBERON:0003057!8.30e-09!15;UBERON:0002420!9.89e-09!9;UBERON:0007245!9.89e-09!9;UBERON:0010009!9.89e-09!9;UBERON:0010011!9.89e-09!9;UBERON:0000454!9.89e-09!9;UBERON:0002308!3.96e-08!9;UBERON:0000125!3.96e-08!9;UBERON:0004733!2.83e-07!12;UBERON:0002028!2.83e-07!12;UBERON:0007277!2.83e-07!12;UBERON:0009663!4.38e-07!7;UBERON:0000062!5.73e-07!511;UBERON:0000200!9.29e-07!6|ontology_enrichment_uberon_v019=UBERON:0001893;5.96e-44;34!UBERON:0001869;9.76e-44;32!UBERON:0002791;3.09e-43;32!UBERON:0003528;6.67e-41;34!UBERON:0002020;6.67e-41;34!UBERON:0002780;1.60e-38;41!UBERON:0001890;1.60e-38;41!UBERON:0000956;1.72e-37;25!UBERON:0000203;1.72e-37;25!UBERON:0000073;2.41e-35;53!UBERON:0002616;2.41e-35;53!UBERON:0002619;2.35e-33;22!UBERON:0001950;2.03e-30;20!UBERON:0000955;1.05e-26;68!UBERON:0001017;3.33e-26;75!UBERON:0001016;1.89e-21;83!UBERON:0002420;1.45e-14;9!UBERON:0007245;1.45e-14;9!UBERON:0010009;1.45e-14;9!UBERON:0010011;1.45e-14;9!UBERON:0000454;1.45e-14;9!UBERON:0009663;1.34e-11;7!UBERON:0000125;5.95e-11;9!UBERON:0002308;5.95e-11;9!UBERON:0000200;5.96e-11;6!UBERON:0011216;3.68e-10;132!UBERON:0002021;2.96e-09;5!UBERON:0001872;3.30e-09;5!UBERON:0000349;3.90e-09;5!UBERON:0001871;3.93e-09;6!UBERON:0004733;1.85e-08;12!UBERON:0002028;1.85e-08;12!UBERON:0000369;5.14e-08;4!UBERON:0002435;5.14e-08;4!UBERON:0000204;5.14e-08;4!UBERON:0004732;1.14e-07;13!UBERON:0002784;7.83e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.28e-69,81;UBERON:0001016,5.10e-64,89;UBERON:0001049,3.54e-62,56;UBERON:0005068,3.54e-62,56;UBERON:0006241,3.54e-62,56;UBERON:0007135,3.54e-62,56;UBERON:0000073,2.43e-61,53;UBERON:0002616,2.43e-61,53;UBERON:0000955,8.74e-58,68;UBERON:0006238,8.74e-58,68;UBERON:0002780,1.40e-54,41;UBERON:0001890,1.40e-54,41;UBERON:0003080,1.40e-54,41;UBERON:0006240,1.40e-54,41;UBERON:0001893,9.01e-51,34;UBERON:0001869,2.03e-48,32;UBERON:0003075,6.38e-48,82;UBERON:0007284,6.38e-48,82;UBERON:0002791,9.77e-48,32;UBERON:0003528,3.72e-47,34;UBERON:0002020,3.72e-47,34;UBERON:0002346,7.24e-45,86;UBERON:0003056,7.11e-42,61;UBERON:0000956,1.65e-37,25;UBERON:0000203,1.65e-37,25;UBERON:0011216,1.26e-36,223;UBERON:0010371,4.68e-34,104;UBERON:0002619,2.26e-33,22;UBERON:0001950,1.97e-30,20;UBERON:0004121,4.84e-30,171;UBERON:0000924,4.84e-30,171;UBERON:0006601,4.84e-30,171;UBERON:0010314,1.80e-25,132;UBERON:0000025,1.54e-22,192;UBERON:0007023,2.53e-19,114;UBERON:0004111,8.09e-17,240;UBERON:0000483,1.16e-15,306;UBERON:0000119,2.71e-15,309;UBERON:0002420,1.64e-14,9;UBERON:0007245,1.64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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3754 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6246 | |||
|TSSclassifier=S | |||
|UniProt=Q9H3M0 | |||
|association_with_transcript=17bp_to_ENST00000295082,NM_002236,uc002rax.2_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_KCNF1_5end | |||
|id=chr2:11052080..11052117,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.66e-08!25;CL:0000047!1.19e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.94e-10;25!CL:0000128;1.11e-07;7!CL:0000126;1.11e-07;7!CL:0000127;1.11e-07;7!CL:0000540;5.87e-07;6!CL:0000404;5.87e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.59e-10,25;CL:0000047,3.52e-10,8;CL:0000128,8.20e-08,7;CL:0000126,8.20e-08,7;CL:0000127,8.20e-08,7;CL:0002453,8.20e-08,7;CL:0000540,6.41e-07,6;CL:0000031,6.41e-07,6;CL:0000404,6.41e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.14e-10;82!CL:0000031;5.87e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p1@KCNF1 | |||
}} |
Revision as of 12:56, 12 September 2013
Short description: | p1@KCNF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_KCNF1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 17bp_to_ENST00000295082, NM_002236, uc002rax.2_5end |
EntrezGene: | KCNF1 |
HGNC: | 6246 |
UniProt: | Q9H3M0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.59e-10 | 25 |
neuronal stem cell | 3.52e-10 | 8 |
oligodendrocyte | 8.20e-08 | 7 |
macroglial cell | 8.20e-08 | 7 |
astrocyte | 8.20e-08 | 7 |
oligodendrocyte precursor cell | 8.20e-08 | 7 |
neuron | 6.41e-07 | 6 |
neuroblast | 6.41e-07 | 6 |
electrically signaling cell | 6.41e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.