FFCP PHASE1:Hg19::chr22:36424822..36424881,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23543|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9906|TSSclassifier=S|UniProt=O43251|association_with_transcript=-237bp_to_NM_001082578,NM_001082579,uc003aon.3,uc003aoo.3_5end|description=CAGE_peak_1_at_RBFOX2_5end|id=chr22:36424822..36424881,-|ontology_enrichment_celltype=CL:0000055!1.14e-18!180;CL:0000057!9.54e-13!75;CL:0002321!1.28e-10!248;CL:0000220!3.73e-10!246;CL:0002620!2.76e-08!23;CL:0000066!3.41e-08!254|ontology_enrichment_celltype_v019=CL:0002620;2.44e-08;23|ontology_enrichment_celltype_v019_2=CL:0000057,1.43e-12,76;CL:0002321,6.43e-11,250;CL:0002620,2.63e-08,23;CL:0000066,4.91e-08,253|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!1.79e-07!143|ontology_enrichment_disease_v019=DOID:3095;7.63e-07;22!DOID:2994;7.63e-07;22|ontology_enrichment_disease_v019_2=DOID:0050687,1.72e-07,143|ontology_enrichment_uberon=UBERON:0000481!8.01e-17!347;UBERON:0003104!1.52e-16!238;UBERON:0009142!1.52e-16!238;UBERON:0000468!1.79e-16!659;UBERON:0000475!4.95e-15!365;UBERON:0002100!7.22e-15!216;UBERON:0004119!3.92e-14!169;UBERON:0000925!3.92e-14!169;UBERON:0006595!3.92e-14!169;UBERON:0005256!7.39e-13!143;UBERON:0001007!3.77e-12!155;UBERON:0001555!3.77e-12!155;UBERON:0007026!3.77e-12!155;UBERON:0000467!1.91e-11!625;UBERON:0000480!2.81e-11!626;UBERON:0000922!3.71e-11!612;UBERON:0003102!6.99e-11!95;UBERON:0000119!2.28e-10!312;UBERON:0000483!9.24e-10!309;UBERON:0005177!1.41e-09!107;UBERON:0002050!1.55e-09!605;UBERON:0005423!1.55e-09!605;UBERON:0000923!3.31e-09!604;UBERON:0005291!3.31e-09!604;UBERON:0006598!3.31e-09!604;UBERON:0002532!3.31e-09!604;UBERON:0000077!3.44e-09!130;UBERON:0000466!2.24e-08!126;UBERON:0000490!2.71e-08!138;UBERON:0004921!2.74e-08!129;UBERON:0004185!2.74e-08!129;UBERON:0003914!8.99e-08!118;UBERON:0001048!2.06e-07!168;UBERON:0000914!7.52e-07!83;UBERON:0002329!7.52e-07!83;UBERON:0003077!7.52e-07!83;UBERON:0003059!7.52e-07!83;UBERON:0007282!7.52e-07!83;UBERON:0009618!7.52e-07!83;UBERON:0007285!7.52e-07!83;UBERON:0000477!7.59e-07!286|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.56e-15,160;UBERON:0009142,1.56e-15,160;UBERON:0002100,4.94e-14,199;UBERON:0004119,1.23e-12,160;UBERON:0000925,1.23e-12,160;UBERON:0006595,1.23e-12,160;UBERON:0005256,7.04e-11,122;UBERON:0001007,1.58e-10,145;UBERON:0001555,1.58e-10,145;UBERON:0007026,1.58e-10,145;UBERON:0005177,5.18e-10,101;UBERON:0000119,5.30e-10,309;UBERON:0000490,6.96e-10,148;UBERON:0003102,1.04e-09,99;UBERON:0000483,2.10e-09,306;UBERON:0003914,1.30e-07,117;UBERON:0000922,1.88e-07,592;UBERON:0004921,8.95e-07,118;UBERON:0004923,9.76e-07,66|phase1_expression=5.26867299884614,6.42301571672949,6.62485699251064,7.00513088471913,8.49226079411847,6.97870819280295,12.6649939084155,6.94891860769514,11.7533532689927,7.12628415854376,13.9560233594486,25.7760819113603,17.9361545195348,18.3174202380869,15.2442792834841,11.4295274896802,15.0673632005994,8.76372108464848,14.1500511649247,13.4201953303699,15.5040525345632,9.71709636582072,9.44578757532487,10.2655818804663,9.66678324879982,0.305653622991805,0.164201178899891,0.0787107813136792,0,0,0.309632246632152,3.67768489791571,11.7470308323518,9.98335827450327,7.28191685454835,3.41206157969812,1.76160263600908,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,1.32171328579026,0,0.526768169550154,0.393419540227666,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0,0,17.0664806419773,17.4382223522945,10.4847300711695,18.0719576192283,14.0374614978049,12.7464936685525,7.15757352345989,15.0856809793817,9.73708616789899,7.31707011626461,9.57399164055074,12.1810540212873,10.9288586487763,8.52804218404188,0,0,0.398873881556595,0,0,0,10.3356451830687,9.46258054616737,12.1499175562658,15.2633144319483,8.38998872419812,7.42818713238182,7.9418087283988,9.04458657092651,7.1153252537342,11.0457802212341,8.86224497640123,9.88353737434066,11.2268546472158,10.2945662496843,16.2028389576352,14.4665559820209,15.7170560838319,21.5087927723145,15.3316637465883,8.54339093611316,11.1753063797548,0,0,13.082821564276,12.424298792383,12.1565291197997,7.15009576391382,17.7838704864265,9.22137793715728,11.2135520028461,7.47242970107935,11.1000396787722,15.8717628053881,12.2586711583416,14.2211855708709,18.9196784556164,13.82822218752,33.9766076159005,13.4228833037038,17.1141546463335,11.9558944441441,25.3658517070532,27.6802734869505,23.174383105871,25.7234255781166,30.0944077413832,42.8801991879427,23.7600571456411,21.2649559179559,10.0117749813183,7.18618141816238,25.2504170931099,31.279629967991,18.2862316219561,21.9488810440419,15.937365381549,17.878329009885,11.4566504991621,26.3702764462627,18.3659354383968,11.8681864649355,12.3037349394605,18.3433502044421,25.7640540045629,13.9587642248692,12.1518959213712,14.0309287432126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0304,6.29692250465019,15.5343510016321,2.09876427442351,12.8558835796073,9.52816153632368,5.85761976830928,23.3707644238886,8.71585638468627,7.02363957442111,13.7261259108071,5.30333623489135,7.41796173578642,21.6901004611314,16.7397758175038,15.7139713734682,13.8440499879613,16.2754688037252,5.13548188229369,21.9188406749786,13.2585478664576,11.2231310211535,28.0279443581277,5.0141507858475,8.63877159687929,6.16317499359211,4.97501663675268,8.27463966895162,5.33084954752452,19.7593478114904,2.0668451147522,5.83502314381064,9.1948127316103,18.3303815841115,23.4455939191534,5.87835219321796,15.4004985488376,6.80255735447334,16.1374962133522,17.9636592534847,11.9662804858133,16.6494659569236,19.307228228694,10.3298982422575,9.38563769613817,41.5620910221746,30.9241095519961,33.2878387092756,3.8242020782295,0|short_description=p1@RBFOX2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23543 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9906 | |||
|TSSclassifier=S | |||
|UniProt=O43251 | |||
|association_with_transcript=-237bp_to_NM_001082578,NM_001082579,uc003aon.3,uc003aoo.3_5end | |||
|description=CAGE_peak_1_at_RBFOX2_5end | |||
|id=chr22:36424822..36424881,- | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-18!180;CL:0000057!9.54e-13!75;CL:0002321!1.28e-10!248;CL:0000220!3.73e-10!246;CL:0002620!2.76e-08!23;CL:0000066!3.41e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.44e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.43e-12,76;CL:0002321,6.43e-11,250;CL:0002620,2.63e-08,23;CL:0000066,4.91e-08,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.79e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.63e-07;22!DOID:2994;7.63e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.72e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000481!8.01e-17!347;UBERON:0003104!1.52e-16!238;UBERON:0009142!1.52e-16!238;UBERON:0000468!1.79e-16!659;UBERON:0000475!4.95e-15!365;UBERON:0002100!7.22e-15!216;UBERON:0004119!3.92e-14!169;UBERON:0000925!3.92e-14!169;UBERON:0006595!3.92e-14!169;UBERON:0005256!7.39e-13!143;UBERON:0001007!3.77e-12!155;UBERON:0001555!3.77e-12!155;UBERON:0007026!3.77e-12!155;UBERON:0000467!1.91e-11!625;UBERON:0000480!2.81e-11!626;UBERON:0000922!3.71e-11!612;UBERON:0003102!6.99e-11!95;UBERON:0000119!2.28e-10!312;UBERON:0000483!9.24e-10!309;UBERON:0005177!1.41e-09!107;UBERON:0002050!1.55e-09!605;UBERON:0005423!1.55e-09!605;UBERON:0000923!3.31e-09!604;UBERON:0005291!3.31e-09!604;UBERON:0006598!3.31e-09!604;UBERON:0002532!3.31e-09!604;UBERON:0000077!3.44e-09!130;UBERON:0000466!2.24e-08!126;UBERON:0000490!2.71e-08!138;UBERON:0004921!2.74e-08!129;UBERON:0004185!2.74e-08!129;UBERON:0003914!8.99e-08!118;UBERON:0001048!2.06e-07!168;UBERON:0000914!7.52e-07!83;UBERON:0002329!7.52e-07!83;UBERON:0003077!7.52e-07!83;UBERON:0003059!7.52e-07!83;UBERON:0007282!7.52e-07!83;UBERON:0009618!7.52e-07!83;UBERON:0007285!7.52e-07!83;UBERON:0000477!7.59e-07!286 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.56e-15,160;UBERON:0009142,1.56e-15,160;UBERON:0002100,4.94e-14,199;UBERON:0004119,1.23e-12,160;UBERON:0000925,1.23e-12,160;UBERON:0006595,1.23e-12,160;UBERON:0005256,7.04e-11,122;UBERON:0001007,1.58e-10,145;UBERON:0001555,1.58e-10,145;UBERON:0007026,1.58e-10,145;UBERON:0005177,5.18e-10,101;UBERON:0000119,5.30e-10,309;UBERON:0000490,6.96e-10,148;UBERON:0003102,1.04e-09,99;UBERON:0000483,2.10e-09,306;UBERON:0003914,1.30e-07,117;UBERON:0000922,1.88e-07,592;UBERON:0004921,8.95e-07,118;UBERON:0004923,9.76e-07,66 | |||
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| |||
|short_description=p1@RBFOX2 | |||
}} |
Revision as of 11:44, 12 September 2013
Short description: | p1@RBFOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RBFOX2_5end |
Coexpression cluster: | NA |
Association with transcript: | -237bp_to_NM_001082578, NM_001082579, uc003aon.3, uc003aoo.3_5end |
EntrezGene: | RBFOX2 |
HGNC: | 9906 |
UniProt: | O43251 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.43e-12 | 76 |
embryonic cell | 6.43e-11 | 250 |
skin fibroblast | 2.63e-08 | 23 |
epithelial cell | 4.91e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.56e-15 | 160 |
entire embryonic mesenchyme | 1.56e-15 | 160 |
trunk | 4.94e-14 | 199 |
endoderm-derived structure | 1.23e-12 | 160 |
endoderm | 1.23e-12 | 160 |
presumptive endoderm | 1.23e-12 | 160 |
trunk mesenchyme | 7.04e-11 | 122 |
digestive system | 1.58e-10 | 145 |
digestive tract | 1.58e-10 | 145 |
primitive gut | 1.58e-10 | 145 |
trunk region element | 5.18e-10 | 101 |
cell layer | 5.30e-10 | 309 |
unilaminar epithelium | 6.96e-10 | 148 |
surface structure | 1.04e-09 | 99 |
epithelium | 2.10e-09 | 306 |
epithelial tube | 1.30e-07 | 117 |
embryo | 1.88e-07 | 592 |
subdivision of digestive tract | 8.95e-07 | 118 |
organ component layer | 9.76e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.72e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.