FFCP PHASE1:Hg19::chr21:47535780..47535815,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1292|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2212|TSSclassifier=W|UniProt=Q9BUM6|association_with_transcript=-138bp_to_BC002484_5end|coexpression_cluster_id=C198|description=CAGE_peak_17_at_COL6A2_5end|id=chr21:47535780..47535815,+|ontology_enrichment_celltype=CL:0000055!1.66e-39!180;CL:0000057!9.72e-26!75;CL:0000680!9.34e-14!57;CL:0000056!9.34e-14!57;CL:0000355!9.34e-14!57;CL:0000187!6.55e-13!54;CL:0000048!1.31e-12!430;CL:0000183!1.73e-12!59;CL:0000723!6.10e-12!436;CL:0000034!2.70e-11!444;CL:0002620!2.86e-11!23;CL:0000393!1.23e-10!60;CL:0000211!1.23e-10!60;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0000499!1.07e-07!27;CL:0002320!7.96e-07!365;CL:0002334!8.48e-07!12|ontology_enrichment_celltype_v019=CL:0002620;4.28e-13;23!CL:0000499;5.37e-09;28!CL:0000723;1.33e-08;61!CL:0002320;2.07e-08;188!CL:0000057;3.79e-08;73!CL:0000134;6.67e-08;55!CL:0000048;3.44e-07;58|ontology_enrichment_celltype_v019_2=CL:0000057,1.73e-21,76;CL:0000048,1.53e-16,427;CL:0000723,7.46e-16,433;CL:0000034,5.72e-15,441;CL:0002620,8.56e-13,23;CL:0002320,3.31e-12,361;CL:0000134,9.76e-10,354;CL:0000187,1.53e-09,55;CL:0000499,7.29e-09,28;CL:0000680,1.13e-08,58;CL:0000056,1.13e-08,58;CL:0000355,1.13e-08,58;CL:0000219,3.98e-08,386;CL:0000393,6.69e-08,61;CL:0000211,6.69e-08,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!1.93e-08!14|ontology_enrichment_disease_v019=DOID:2394;3.77e-09;14|ontology_enrichment_disease_v019_2=DOID:2394,3.33e-09,14|ontology_enrichment_uberon=UBERON:0000914!3.02e-18!83;UBERON:0002329!3.02e-18!83;UBERON:0003077!3.02e-18!83;UBERON:0003059!3.02e-18!83;UBERON:0007282!3.02e-18!83;UBERON:0009618!3.02e-18!83;UBERON:0007285!3.02e-18!83;UBERON:0004290!9.01e-17!70;UBERON:0000486!7.37e-14!82;UBERON:0001134!2.70e-13!61;UBERON:0002036!2.70e-13!61;UBERON:0003082!2.70e-13!61;UBERON:0002385!2.92e-13!63;UBERON:0001015!2.92e-13!63;UBERON:0000383!2.92e-13!63;UBERON:0005256!3.61e-12!143;UBERON:0002199!6.36e-09!45;UBERON:0002416!6.36e-09!45;UBERON:0003102!4.27e-08!95;UBERON:0002100!4.83e-08!216;UBERON:0001013!4.96e-08!14;UBERON:0002384!3.90e-07!375;UBERON:0007100!7.19e-07!27|ontology_enrichment_uberon_v019=UBERON:0001013;1.19e-08;14!UBERON:0002199;1.29e-08;46!UBERON:0002416;1.29e-08;46!UBERON:0002384;1.47e-08;198!UBERON:0003102;6.17e-07;50!UBERON:0002385;8.24e-07;31!UBERON:0001015;8.24e-07;31!UBERON:0000383;8.24e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.25e-12,73;UBERON:0002329,2.63e-12,71;UBERON:0003059,2.63e-12,71;UBERON:0007282,2.63e-12,71;UBERON:0004290,2.63e-12,71;UBERON:0009618,2.63e-12,71;UBERON:0003077,5.35e-12,72;UBERON:0007285,5.35e-12,72;UBERON:0002199,7.27e-12,46;UBERON:0002416,7.27e-12,46;UBERON:0002384,1.30e-11,371;UBERON:0000486,6.53e-11,83;UBERON:0007503,2.51e-10,78;UBERON:0005256,2.92e-09,122;UBERON:0002097,6.13e-09,41;UBERON:0001013,8.91e-09,14;UBERON:0002385,9.54e-09,64;UBERON:0001015,9.54e-09,64;UBERON:0000383,9.54e-09,64;UBERON:0001134,1.78e-08,62;UBERON:0002036,1.78e-08,62;UBERON:0003082,1.78e-08,62;UBERON:0003102,2.83e-08,99;UBERON:0003104,1.02e-07,160;UBERON:0009142,1.02e-07,160|phase1_expression=0.908391896352783,2.99740733447376,0.422863212287913,7.00513088471913,0.893922188854576,4.36169262050184,2.53299878168311,0.631719873426831,6.00726944859629,0,0,0,0,1.73272894144065,4.30816588446291,0,4.21886169616784,2.19093027116212,4.87932798790507,0.738726348460727,2.85600967741954,3.13454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0.534880391567015,0,2.43806866313962,0,0.255725123687061,2.53007406669196,0.50133791063589,3.33146993609895,1.5905718941022,3.40644409211845,0.0945348171640679,0,0,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,1.19168262731897,4.30254931123221,0.709336764396714,1.68203280042692,0,0.49333509683432,0.311211035399766,1.88594940897563,1.9615428373615,0.756787138224657,2.88087962239999,0.234321431833797,2.18512053781224,0.570471821544449,2.54062756938062,2.70099346880659,2.42809416552197,1.82586048712923,0.61246251376468,3.0708579327942,2.37649296704261,1.18800285728205,4.69807165629258,0.910161361938026,4.31170885089743,0.168336113954066,0.625592599359821,0.277064115484183,0.438977620880838,2.75839016219118,4.05642759047811,0.340296549480063,1.79389635688862,2.13557388818567,1.48352330811693,3.30100205692843,1.13357782162283,1.03056216018252,0.558350568994769,2.36286865137773,1.36411807225678,1.26216887122057,1.10459878370759,4.0411514204703,6.03516307278244,0.503760491138201,1.18692414617341,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,1.56449532329816,14.7945415784364,0,3.25057549622385,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,5.8803484554216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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |||
|TSSclassifier=W | |||
|UniProt=Q9BUM6 | |||
|association_with_transcript=-138bp_to_BC002484_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_17_at_COL6A2_5end | |||
|id=chr21:47535780..47535815,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.66e-39!180;CL:0000057!9.72e-26!75;CL:0000680!9.34e-14!57;CL:0000056!9.34e-14!57;CL:0000355!9.34e-14!57;CL:0000187!6.55e-13!54;CL:0000048!1.31e-12!430;CL:0000183!1.73e-12!59;CL:0000723!6.10e-12!436;CL:0000034!2.70e-11!444;CL:0002620!2.86e-11!23;CL:0000393!1.23e-10!60;CL:0000211!1.23e-10!60;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0000499!1.07e-07!27;CL:0002320!7.96e-07!365;CL:0002334!8.48e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.28e-13;23!CL:0000499;5.37e-09;28!CL:0000723;1.33e-08;61!CL:0002320;2.07e-08;188!CL:0000057;3.79e-08;73!CL:0000134;6.67e-08;55!CL:0000048;3.44e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.73e-21,76;CL:0000048,1.53e-16,427;CL:0000723,7.46e-16,433;CL:0000034,5.72e-15,441;CL:0002620,8.56e-13,23;CL:0002320,3.31e-12,361;CL:0000134,9.76e-10,354;CL:0000187,1.53e-09,55;CL:0000499,7.29e-09,28;CL:0000680,1.13e-08,58;CL:0000056,1.13e-08,58;CL:0000355,1.13e-08,58;CL:0000219,3.98e-08,386;CL:0000393,6.69e-08,61;CL:0000211,6.69e-08,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.93e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.77e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.33e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.02e-18!83;UBERON:0002329!3.02e-18!83;UBERON:0003077!3.02e-18!83;UBERON:0003059!3.02e-18!83;UBERON:0007282!3.02e-18!83;UBERON:0009618!3.02e-18!83;UBERON:0007285!3.02e-18!83;UBERON:0004290!9.01e-17!70;UBERON:0000486!7.37e-14!82;UBERON:0001134!2.70e-13!61;UBERON:0002036!2.70e-13!61;UBERON:0003082!2.70e-13!61;UBERON:0002385!2.92e-13!63;UBERON:0001015!2.92e-13!63;UBERON:0000383!2.92e-13!63;UBERON:0005256!3.61e-12!143;UBERON:0002199!6.36e-09!45;UBERON:0002416!6.36e-09!45;UBERON:0003102!4.27e-08!95;UBERON:0002100!4.83e-08!216;UBERON:0001013!4.96e-08!14;UBERON:0002384!3.90e-07!375;UBERON:0007100!7.19e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.19e-08;14!UBERON:0002199;1.29e-08;46!UBERON:0002416;1.29e-08;46!UBERON:0002384;1.47e-08;198!UBERON:0003102;6.17e-07;50!UBERON:0002385;8.24e-07;31!UBERON:0001015;8.24e-07;31!UBERON:0000383;8.24e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.25e-12,73;UBERON:0002329,2.63e-12,71;UBERON:0003059,2.63e-12,71;UBERON:0007282,2.63e-12,71;UBERON:0004290,2.63e-12,71;UBERON:0009618,2.63e-12,71;UBERON:0003077,5.35e-12,72;UBERON:0007285,5.35e-12,72;UBERON:0002199,7.27e-12,46;UBERON:0002416,7.27e-12,46;UBERON:0002384,1.30e-11,371;UBERON:0000486,6.53e-11,83;UBERON:0007503,2.51e-10,78;UBERON:0005256,2.92e-09,122;UBERON:0002097,6.13e-09,41;UBERON:0001013,8.91e-09,14;UBERON:0002385,9.54e-09,64;UBERON:0001015,9.54e-09,64;UBERON:0000383,9.54e-09,64;UBERON:0001134,1.78e-08,62;UBERON:0002036,1.78e-08,62;UBERON:0003082,1.78e-08,62;UBERON:0003102,2.83e-08,99;UBERON:0003104,1.02e-07,160;UBERON:0009142,1.02e-07,160 | |||
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| |||
|short_description=p17@COL6A2 | |||
}} |
Revision as of 10:49, 12 September 2013
Short description: | p17@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_17_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -138bp_to_BC002484_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | Q9BUM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.73e-21 | 76 |
multi fate stem cell | 1.53e-16 | 427 |
somatic stem cell | 7.46e-16 | 433 |
stem cell | 5.72e-15 | 441 |
skin fibroblast | 8.56e-13 | 23 |
connective tissue cell | 3.31e-12 | 361 |
mesenchymal cell | 9.76e-10 | 354 |
muscle cell | 1.53e-09 | 55 |
stromal cell | 7.29e-09 | 28 |
muscle precursor cell | 1.13e-08 | 58 |
myoblast | 1.13e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-08 | 58 |
motile cell | 3.98e-08 | 386 |
electrically responsive cell | 6.69e-08 | 61 |
electrically active cell | 6.69e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.25e-12 | 73 |
somite | 2.63e-12 | 71 |
presomitic mesoderm | 2.63e-12 | 71 |
presumptive segmental plate | 2.63e-12 | 71 |
dermomyotome | 2.63e-12 | 71 |
trunk paraxial mesoderm | 2.63e-12 | 71 |
paraxial mesoderm | 5.35e-12 | 72 |
presumptive paraxial mesoderm | 5.35e-12 | 72 |
integument | 7.27e-12 | 46 |
integumental system | 7.27e-12 | 46 |
connective tissue | 1.30e-11 | 371 |
multilaminar epithelium | 6.53e-11 | 83 |
epithelial vesicle | 2.51e-10 | 78 |
trunk mesenchyme | 2.92e-09 | 122 |
skin of body | 6.13e-09 | 41 |
adipose tissue | 8.91e-09 | 14 |
muscle tissue | 9.54e-09 | 64 |
musculature | 9.54e-09 | 64 |
musculature of body | 9.54e-09 | 64 |
skeletal muscle tissue | 1.78e-08 | 62 |
striated muscle tissue | 1.78e-08 | 62 |
myotome | 1.78e-08 | 62 |
surface structure | 2.83e-08 | 99 |
mesenchyme | 1.02e-07 | 160 |
entire embryonic mesenchyme | 1.02e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.33e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.