FFCP PHASE1:Hg19::chr21:47531929..47531974,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1292|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2212|TSSclassifier=W|UniProt=|association_with_transcript=-357bp_to_ENST00000460886_5end|coexpression_cluster_id=C198|description=CAGE_peak_12_at_COL6A2_5end|id=chr21:47531929..47531974,+|ontology_enrichment_celltype=CL:0000055!3.72e-39!180;CL:0000057!1.44e-22!75;CL:0000680!5.41e-16!57;CL:0000056!5.41e-16!57;CL:0000355!5.41e-16!57;CL:0000187!2.50e-15!54;CL:0000183!4.35e-15!59;CL:0000393!1.78e-13!60;CL:0000211!1.78e-13!60;CL:0000048!2.13e-12!430;CL:0000192!7.44e-12!42;CL:0000514!7.44e-12!42;CL:0000723!2.88e-11!436;CL:0000034!1.52e-10!444;CL:0000359!1.78e-09!32;CL:0002620!5.63e-09!23;CL:0000136!3.01e-08!15;CL:0000499!4.22e-08!27|ontology_enrichment_celltype_v019=CL:0002620;1.43e-11;23!CL:0000057;1.37e-10;73!CL:0000723;1.01e-09;61!CL:0000134;1.73e-09;55!CL:0000192;2.81e-09;43!CL:0000187;4.02e-09;55!CL:0002320;9.68e-09;188!CL:0000359;1.69e-08;32!CL:0000048;1.74e-08;58!CL:0000499;3.28e-08;28!CL:0000393;3.32e-08;61!CL:0000211;3.32e-08;61!CL:0002334;7.23e-08;12!CL:0002570;2.19e-07;8!CL:0000188;8.76e-07;9|ontology_enrichment_celltype_v019_2=CL:0000057,7.79e-27,76;CL:0000048,3.06e-18,427;CL:0000723,3.14e-17,433;CL:0000680,2.94e-16,58;CL:0000056,2.94e-16,58;CL:0000355,2.94e-16,58;CL:0000187,4.67e-16,55;CL:0000034,6.14e-16,441;CL:0000393,1.10e-13,61;CL:0000211,1.10e-13,61;CL:0000192,4.89e-12,43;CL:0000514,4.89e-12,43;CL:0002620,2.37e-11,23;CL:0002320,7.09e-10,361;CL:0000359,1.36e-08,32;CL:0000499,2.91e-08,28;CL:0002334,5.21e-08,12;CL:0000134,5.81e-08,354;CL:0000136,9.49e-08,15;CL:0002570,1.73e-07,8;CL:0000188,9.46e-07,9|ontology_enrichment_development_v019=CL:0000514;2.81e-09;43!CL:0000355;1.20e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;1.55e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.15e-07,14|ontology_enrichment_uberon=UBERON:0000914!3.24e-21!83;UBERON:0002329!3.24e-21!83;UBERON:0003077!3.24e-21!83;UBERON:0003059!3.24e-21!83;UBERON:0007282!3.24e-21!83;UBERON:0009618!3.24e-21!83;UBERON:0007285!3.24e-21!83;UBERON:0004290!3.91e-20!70;UBERON:0005256!1.24e-16!143;UBERON:0000486!1.44e-16!82;UBERON:0002385!1.99e-16!63;UBERON:0001015!1.99e-16!63;UBERON:0000383!1.99e-16!63;UBERON:0001134!4.12e-16!61;UBERON:0002036!4.12e-16!61;UBERON:0003082!4.12e-16!61;UBERON:0002100!1.36e-11!216;UBERON:0003102!5.06e-11!95;UBERON:0001013!1.38e-09!14;UBERON:0002199!5.11e-09!45;UBERON:0002416!5.11e-09!45;UBERON:0000475!1.07e-08!365;UBERON:0003104!1.48e-08!238;UBERON:0009142!1.48e-08!238;UBERON:0004872!4.78e-07!84|ontology_enrichment_uberon_v019=UBERON:0001013;9.57e-12;14!UBERON:0002384;7.73e-10;198!UBERON:0002385;3.94e-09;31!UBERON:0001015;3.94e-09;31!UBERON:0000383;3.94e-09;31!UBERON:0002199;5.74e-09;46!UBERON:0002416;5.74e-09;46!UBERON:0004573;6.93e-08;33!UBERON:0004571;6.93e-08;33!UBERON:0003102;7.60e-08;50!UBERON:0002097;1.99e-07;41!UBERON:0002204;5.40e-07;70!UBERON:0002067;7.39e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.58e-21,73;UBERON:0002329,5.27e-21,71;UBERON:0003059,5.27e-21,71;UBERON:0007282,5.27e-21,71;UBERON:0004290,5.27e-21,71;UBERON:0009618,5.27e-21,71;UBERON:0003077,1.97e-20,72;UBERON:0007285,1.97e-20,72;UBERON:0005256,2.32e-17,122;UBERON:0007503,2.44e-17,78;UBERON:0000486,3.12e-17,83;UBERON:0001134,3.96e-16,62;UBERON:0002036,3.96e-16,62;UBERON:0003082,3.96e-16,62;UBERON:0002385,6.45e-16,64;UBERON:0001015,6.45e-16,64;UBERON:0000383,6.45e-16,64;UBERON:0003104,2.27e-14,160;UBERON:0009142,2.27e-14,160;UBERON:0002199,4.91e-13,46;UBERON:0002416,4.91e-13,46;UBERON:0003102,9.15e-13,99;UBERON:0001013,6.86e-12,14;UBERON:0002384,3.25e-10,371;UBERON:0002097,8.33e-10,41;UBERON:0002100,1.36e-09,199;UBERON:0000490,6.21e-09,148;UBERON:0004573,9.73e-09,33;UBERON:0004571,9.73e-09,33;UBERON:0000926,2.13e-08,315;UBERON:0004120,2.13e-08,315;UBERON:0006603,2.13e-08,315;UBERON:0001637,3.30e-07,42;UBERON:0003509,3.30e-07,42;UBERON:0004572,3.30e-07,42;UBERON:0002067,9.24e-07,9;UBERON:0004016,9.24e-07,9;UBERON:0010083,9.24e-07,9|phase1_expression=3.81524596468169,7.27941781229343,3.94672331468719,6.00439790118782,5.81049422755474,6.10636966870258,12.6649939084155,6.94891860769514,7.31319758959548,0,0,0,0,3.21792517696121,5.63375538737457,8.0679017574213,3.61616716814386,5.84248072309899,2.92759679274304,1.72369481307503,4.48801520737357,4.38836610069323,0,0.547497700291537,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0.821127996921047,0.201606743224732,0.534880391567015,0.144824403882799,2.43806866313962,0,0.383587685530591,3.97583067623023,9.02408239144601,5.21447468258965,4.7717156823066,4.37971383272372,0.378139268656271,0.443458794925128,0.087834785693126,0.458426764241994,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-357bp_to_ENST00000460886_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_12_at_COL6A2_5end | |||
|id=chr21:47531929..47531974,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.72e-39!180;CL:0000057!1.44e-22!75;CL:0000680!5.41e-16!57;CL:0000056!5.41e-16!57;CL:0000355!5.41e-16!57;CL:0000187!2.50e-15!54;CL:0000183!4.35e-15!59;CL:0000393!1.78e-13!60;CL:0000211!1.78e-13!60;CL:0000048!2.13e-12!430;CL:0000192!7.44e-12!42;CL:0000514!7.44e-12!42;CL:0000723!2.88e-11!436;CL:0000034!1.52e-10!444;CL:0000359!1.78e-09!32;CL:0002620!5.63e-09!23;CL:0000136!3.01e-08!15;CL:0000499!4.22e-08!27 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.43e-11;23!CL:0000057;1.37e-10;73!CL:0000723;1.01e-09;61!CL:0000134;1.73e-09;55!CL:0000192;2.81e-09;43!CL:0000187;4.02e-09;55!CL:0002320;9.68e-09;188!CL:0000359;1.69e-08;32!CL:0000048;1.74e-08;58!CL:0000499;3.28e-08;28!CL:0000393;3.32e-08;61!CL:0000211;3.32e-08;61!CL:0002334;7.23e-08;12!CL:0002570;2.19e-07;8!CL:0000188;8.76e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.79e-27,76;CL:0000048,3.06e-18,427;CL:0000723,3.14e-17,433;CL:0000680,2.94e-16,58;CL:0000056,2.94e-16,58;CL:0000355,2.94e-16,58;CL:0000187,4.67e-16,55;CL:0000034,6.14e-16,441;CL:0000393,1.10e-13,61;CL:0000211,1.10e-13,61;CL:0000192,4.89e-12,43;CL:0000514,4.89e-12,43;CL:0002620,2.37e-11,23;CL:0002320,7.09e-10,361;CL:0000359,1.36e-08,32;CL:0000499,2.91e-08,28;CL:0002334,5.21e-08,12;CL:0000134,5.81e-08,354;CL:0000136,9.49e-08,15;CL:0002570,1.73e-07,8;CL:0000188,9.46e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;2.81e-09;43!CL:0000355;1.20e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.55e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.15e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.24e-21!83;UBERON:0002329!3.24e-21!83;UBERON:0003077!3.24e-21!83;UBERON:0003059!3.24e-21!83;UBERON:0007282!3.24e-21!83;UBERON:0009618!3.24e-21!83;UBERON:0007285!3.24e-21!83;UBERON:0004290!3.91e-20!70;UBERON:0005256!1.24e-16!143;UBERON:0000486!1.44e-16!82;UBERON:0002385!1.99e-16!63;UBERON:0001015!1.99e-16!63;UBERON:0000383!1.99e-16!63;UBERON:0001134!4.12e-16!61;UBERON:0002036!4.12e-16!61;UBERON:0003082!4.12e-16!61;UBERON:0002100!1.36e-11!216;UBERON:0003102!5.06e-11!95;UBERON:0001013!1.38e-09!14;UBERON:0002199!5.11e-09!45;UBERON:0002416!5.11e-09!45;UBERON:0000475!1.07e-08!365;UBERON:0003104!1.48e-08!238;UBERON:0009142!1.48e-08!238;UBERON:0004872!4.78e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.57e-12;14!UBERON:0002384;7.73e-10;198!UBERON:0002385;3.94e-09;31!UBERON:0001015;3.94e-09;31!UBERON:0000383;3.94e-09;31!UBERON:0002199;5.74e-09;46!UBERON:0002416;5.74e-09;46!UBERON:0004573;6.93e-08;33!UBERON:0004571;6.93e-08;33!UBERON:0003102;7.60e-08;50!UBERON:0002097;1.99e-07;41!UBERON:0002204;5.40e-07;70!UBERON:0002067;7.39e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.58e-21,73;UBERON:0002329,5.27e-21,71;UBERON:0003059,5.27e-21,71;UBERON:0007282,5.27e-21,71;UBERON:0004290,5.27e-21,71;UBERON:0009618,5.27e-21,71;UBERON:0003077,1.97e-20,72;UBERON:0007285,1.97e-20,72;UBERON:0005256,2.32e-17,122;UBERON:0007503,2.44e-17,78;UBERON:0000486,3.12e-17,83;UBERON:0001134,3.96e-16,62;UBERON:0002036,3.96e-16,62;UBERON:0003082,3.96e-16,62;UBERON:0002385,6.45e-16,64;UBERON:0001015,6.45e-16,64;UBERON:0000383,6.45e-16,64;UBERON:0003104,2.27e-14,160;UBERON:0009142,2.27e-14,160;UBERON:0002199,4.91e-13,46;UBERON:0002416,4.91e-13,46;UBERON:0003102,9.15e-13,99;UBERON:0001013,6.86e-12,14;UBERON:0002384,3.25e-10,371;UBERON:0002097,8.33e-10,41;UBERON:0002100,1.36e-09,199;UBERON:0000490,6.21e-09,148;UBERON:0004573,9.73e-09,33;UBERON:0004571,9.73e-09,33;UBERON:0000926,2.13e-08,315;UBERON:0004120,2.13e-08,315;UBERON:0006603,2.13e-08,315;UBERON:0001637,3.30e-07,42;UBERON:0003509,3.30e-07,42;UBERON:0004572,3.30e-07,42;UBERON:0002067,9.24e-07,9;UBERON:0004016,9.24e-07,9;UBERON:0010083,9.24e-07,9 | |||
|phase1_expression=3.81524596468169,7.27941781229343,3.94672331468719,6.00439790118782,5.81049422755474,6.10636966870258,12.6649939084155,6.94891860769514,7.31319758959548,0,0,0,0,3.21792517696121,5.63375538737457,8.0679017574213,3.61616716814386,5.84248072309899,2.92759679274304,1.72369481307503,4.48801520737357,4.38836610069323,0,0.547497700291537,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0.821127996921047,0.201606743224732,0.534880391567015,0.144824403882799,2.43806866313962,0,0.383587685530591,3.97583067623023,9.02408239144601,5.21447468258965,4.7717156823066,4.37971383272372,0.378139268656271,0.443458794925128,0.087834785693126,0.458426764241994,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,5.4666914686485,3.29239330327907,1.58891016975863,6.88407889797153,2.83734705758686,0.560677600142307,1.06748995729705,2.22000793575444,1.55605517699883,1.88594940897563,2.28846664358842,3.48122083583342,2.88087962239999,0.468642863667593,4.68240115245481,1.1409436430889,5.38015249986484,2.81842796745036,4.04682360920329,3.37081936085396,1.02077085627447,4.66770405784718,4.33968280938215,9.50402285825643,19.2868204837274,0.910161361938026,6.46756327634615,1.0100166837244,2.50237039743928,1.6623846929051,3.07284334616587,6.12975591598039,10.2161880056486,0.226864366320042,3.04962380671065,5.12537733164562,2.96704661623387,6.30191301777245,3.50378599410692,3.09168648054755,1.67505170698431,5.23206629947925,2.14361411354637,1.7670364197088,5.24684422261106,8.08230284094059,6.39017266529906,2.21654616100809,2.37384829234683,0,0,0,0,0,0.464775771478074,0.310983165046111,0.252320850875628,1.45990943630332,3.12899064659632,21.2269509603652,9.66944449467364,1.85747171212792,5.77503585335668,0,0,0,0,0,0,0,0,0,0.738155454624648,5.60967095213783,4.115740113314,8.82052268313252,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,1.3032332212413,3.11980435583874,0,0.231860809950154,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.126995788584338,0,0,1.71072446022705,1.02827492703324,0,0,0.560655421726804,1.74384027533312,1.10007428731425,0.517086863031111,21.4593867511129,4.22651376278,2.39344304926383,1.04007436911366,2.05765899409714,0,2.39779961114489,2.7165818795048,3.25572963234866,0.823240336780769,1.95441710576241,1.77695974371273,0.791951872933429,0.904318131178758,0,0.199945982364114,0,0,0,1.67737398844108,9.18895486672911,2.85273810081437,2.17171960001369,2.87666851570537,0.716243852959582,0,0,0.646882724578552,0.385029108839245,0,0,0,0,0,0,0,0,2.57652132610194,5.50187573165645,2.71265023699736,3.74347550755453,3.39015078714607,1.26161932027148,2.10854546986884,6.62081419400982,13.6444502433591,8.27784570340039,1.99267679560631,2.02806085395873,4.43106433787223,4.30762546418029,9.95115929051482,0,0,0.533637789017222,0.303127571446259,0,0.30239029332968,4.46594054073798,1.53461973288062,8.41980283299221,2.30650468660262,3.58195074346692,1.93024705372329,2.96836132889982,4.00945203886904,6.39222211127257,2.7101961484557,5.19254429183621,8.59956800603698,0.362578348774867,0,0,2.75554675595056,7.10155555226196,9.44095787707854,0.451199612907412,0,0,0,0,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0.618246069886334,0.27470839445503,0.082509499920588,0,1.30012049207304,1.6068392984416,7.34697459020127,3.23502095940753,5.2191249406884,4.41077031950498,2.36324538710202,5.22060098091223,3.57951835147624,4.36256974669013,0,0,0,0,1.39453664789186,5.35180989612088,1.3940745403212,2.7723022215848,0.532306030317022,0,6.11569923042936,2.14687330112987,1.116475108079,0.316379424718726,2.66882271493355,2.04718233049067,1.71175595213568,5.40945521474092,6.27958912159384,1.79872457583315,3.56898138656871,3.18093486333353,1.61745985258653,3.17020642346017,4.63384301862879,0,1.94970791705028,14.7910205459458,3.27599787379166,5.37340641424108,2.26016233240486,3.30819206127675,1.32687795048244,4.38450885253763,1.73632660280006,5.24715801637306,0.811641507850816,2.16876448669825,3.09865162785466,0.573645408816206,0.294747123039363,0.35667105148125,2.12856638442359,6.75544432952525,5.92730807327823,1.13841952129715,4.89908608342976,0,0,0,1.12972560932135,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10222901961303,0,0,0,2.3874448473769,0,0.307160702099232,0,0,1.11308705022906,0,0.211125408127993,4.5827037297746,1.93398740871803,0,0.20453736500431,0,7.77598969154519,0.179736702294654,0,0,3.94573622547734,0,0,0.969332746095218,0.0927680981618513,0,0,0,3.62499787717397,0,0,0,0.344743373241465,0,1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| |||
|short_description=p12@COL6A2 | |||
}} |
Revision as of 10:49, 12 September 2013
Short description: | p12@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -357bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.79e-27 | 76 |
multi fate stem cell | 3.06e-18 | 427 |
somatic stem cell | 3.14e-17 | 433 |
muscle precursor cell | 2.94e-16 | 58 |
myoblast | 2.94e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.94e-16 | 58 |
muscle cell | 4.67e-16 | 55 |
stem cell | 6.14e-16 | 441 |
electrically responsive cell | 1.10e-13 | 61 |
electrically active cell | 1.10e-13 | 61 |
smooth muscle cell | 4.89e-12 | 43 |
smooth muscle myoblast | 4.89e-12 | 43 |
skin fibroblast | 2.37e-11 | 23 |
connective tissue cell | 7.09e-10 | 361 |
vascular associated smooth muscle cell | 1.36e-08 | 32 |
stromal cell | 2.91e-08 | 28 |
preadipocyte | 5.21e-08 | 12 |
mesenchymal cell | 5.81e-08 | 354 |
fat cell | 9.49e-08 | 15 |
mesenchymal stem cell of adipose | 1.73e-07 | 8 |
cell of skeletal muscle | 9.46e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.15e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.