FFCP PHASE1:Hg19::chr20:55213735..55213739,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4049|description=CAGE_peak_at_chr20:55213735..55213739,+|id=chr20:55213735..55213739,+|ontology_enrichment_celltype=CL:0000066!1.40e-15!254;CL:0002076!1.88e-09!43;CL:0000221!3.17e-09!71;CL:0000039!8.18e-08!7;CL:0000586!8.18e-08!7;CL:0002077!2.55e-07!33|ontology_enrichment_celltype_v019=CL:0000039;3.50e-12;7!CL:0000586;3.50e-12;7!CL:0000128;2.65e-09;7!CL:0000126;2.65e-09;7!CL:0000127;2.65e-09;7!CL:0000710;3.64e-09;20!CL:0002552;2.48e-08;5!CL:0002076;7.48e-08;42!CL:0002077;1.17e-07;34!CL:0000197;8.61e-07;6!CL:0000098;8.61e-07;6!CL:0002167;8.61e-07;6|ontology_enrichment_celltype_v019_2=CL:0000066,7.96e-14,253;CL:0000039,3.14e-12,7;CL:0000586,3.14e-12,7;CL:0000221,2.00e-10,72;CL:0000133,1.57e-09,59;CL:0000128,1.64e-09,7;CL:0000126,1.64e-09,7;CL:0000127,1.64e-09,7;CL:0002453,1.64e-09,7;CL:0002076,4.41e-09,42;CL:0000710,6.28e-09,20;CL:0002077,1.66e-08,34;CL:0002552,1.75e-08,5;CL:0000197,6.72e-07,6;CL:0000098,6.72e-07,6;CL:0002167,6.72e-07,6;CL:0000223,8.65e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!5.89e-12!106;DOID:0050687!2.70e-11!143;DOID:1749!8.60e-08!14|ontology_enrichment_disease_v019=DOID:1749;9.27e-10;14!DOID:5093;6.33e-07;4!DOID:1612;6.33e-07;4|ontology_enrichment_disease_v019_2=DOID:305,3.16e-11,106;DOID:0050687,9.28e-10,143;DOID:1749,9.95e-10,14;DOID:5093,3.89e-07,4;DOID:1612,3.89e-07,4|ontology_enrichment_uberon=UBERON:0003102!4.91e-17!95;UBERON:0000165!2.00e-14!28;UBERON:0000930!2.00e-14!28;UBERON:0004119!4.89e-14!169;UBERON:0000925!4.89e-14!169;UBERON:0006595!4.89e-14!169;UBERON:0001007!4.09e-12!155;UBERON:0001555!4.09e-12!155;UBERON:0007026!4.09e-12!155;UBERON:0000161!1.13e-10!35;UBERON:0000166!1.26e-10!21;UBERON:0001444!1.09e-09!48;UBERON:0001004!2.31e-09!72;UBERON:0000062!3.50e-08!511;UBERON:0004121!1.52e-07!169;UBERON:0005157!1.59e-07!51;UBERON:0005153!1.69e-07!37;UBERON:0001828!2.79e-07!8;UBERON:0005631!2.92e-07!14;UBERON:0000158!2.92e-07!14;UBERON:0000077!3.09e-07!130;UBERON:0000924!3.13e-07!173;UBERON:0006601!3.13e-07!173;UBERON:0002097!9.28e-07!40|ontology_enrichment_uberon_v019=UBERON:0000344;4.02e-13;20!UBERON:0000165;1.30e-12;28!UBERON:0003729;8.04e-12;13!UBERON:0001828;2.67e-11;8!UBERON:0000161;9.88e-09;19!UBERON:0000166;9.88e-09;19!UBERON:0005631;2.07e-08;10!UBERON:0000158;2.07e-08;10!UBERON:0003350;8.13e-08;8!UBERON:0001555;5.69e-07;54!UBERON:0003929;6.59e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0000165,1.04e-13,29;UBERON:0000930,1.04e-13,29;UBERON:0000344,2.46e-13,20;UBERON:0003102,4.49e-12,99;UBERON:0003729,6.29e-12,13;UBERON:0000161,6.76e-12,36;UBERON:0000166,9.75e-12,22;UBERON:0001828,2.52e-11,8;UBERON:0004923,7.51e-10,66;UBERON:0005631,3.52e-09,14;UBERON:0000158,3.52e-09,14;UBERON:0003350,7.35e-08,8;UBERON:0001444,1.56e-07,49;UBERON:0000033,1.90e-07,56;UBERON:0000153,6.54e-07,62;UBERON:0007811,6.54e-07,62|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,2.11013582582763,0,0,0,0,0,0,3.32426856807327,1.63200552995402,2.5076377718247,1.43117993565528,2.73748850145768,1.63205431473244,0,0.0821005894499457,0,0,0,0.154816123316076,1.83884244895785,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.70296429550139,0,0.570471821544449,1.79338416662161,0.469737994575059,0.647491777472526,1.40450806702248,5.71631679513701,9.45824243300613,1.65321249881225,5.94001428641027,4.94533858557114,0,0,9.09015015351958,1.62654075833553,1.93944880838928,0.877955241761676,2.14541457059314,0.751190294532984,0,0.358779271377724,1.06778694409284,0.635795703478686,0.600182192168805,0.515262646192195,0,0.744467425326359,0.168776332241266,0,0.504867548488229,0.276149695926898,0,0.355009592516614,1.20902517873168,0.847802961552438,1.54608682530637,1.09098448236334,2.29443676311203,1.58565817968474,1.06023814657188,1.51052125730374,1.34759371519982,6.05570042101508,0.72995471815166,0,7.07565032012174,0,0.928735856063958,0,0,0.674338760312407,0.482022059766964,0.220587945464788,0.217879444092406,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,2.33678033231916,0.171567810298526,1.42675371031213,0,2.81481122752566,0.648119116109707,1.62904152655162,0,0,0,0,0,0,0,16.5942923571448,3.43394464837949,0,0.234004265139238,0,1.87467667973554,1.51183915378974,0.283550194484773,3.04498977189684,2.03443756959773,2.68367875415648,0,0,0.207328115540772,0,0.25248486685276,0.698476837213859,1.14596527667483,0,0,1.13110241973656,1.2013722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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4049 | |||
|description=CAGE_peak_at_chr20:55213735..55213739,+ | |||
|id=chr20:55213735..55213739,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.40e-15!254;CL:0002076!1.88e-09!43;CL:0000221!3.17e-09!71;CL:0000039!8.18e-08!7;CL:0000586!8.18e-08!7;CL:0002077!2.55e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.50e-12;7!CL:0000586;3.50e-12;7!CL:0000128;2.65e-09;7!CL:0000126;2.65e-09;7!CL:0000127;2.65e-09;7!CL:0000710;3.64e-09;20!CL:0002552;2.48e-08;5!CL:0002076;7.48e-08;42!CL:0002077;1.17e-07;34!CL:0000197;8.61e-07;6!CL:0000098;8.61e-07;6!CL:0002167;8.61e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.96e-14,253;CL:0000039,3.14e-12,7;CL:0000586,3.14e-12,7;CL:0000221,2.00e-10,72;CL:0000133,1.57e-09,59;CL:0000128,1.64e-09,7;CL:0000126,1.64e-09,7;CL:0000127,1.64e-09,7;CL:0002453,1.64e-09,7;CL:0002076,4.41e-09,42;CL:0000710,6.28e-09,20;CL:0002077,1.66e-08,34;CL:0002552,1.75e-08,5;CL:0000197,6.72e-07,6;CL:0000098,6.72e-07,6;CL:0002167,6.72e-07,6;CL:0000223,8.65e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.89e-12!106;DOID:0050687!2.70e-11!143;DOID:1749!8.60e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.27e-10;14!DOID:5093;6.33e-07;4!DOID:1612;6.33e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.16e-11,106;DOID:0050687,9.28e-10,143;DOID:1749,9.95e-10,14;DOID:5093,3.89e-07,4;DOID:1612,3.89e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003102!4.91e-17!95;UBERON:0000165!2.00e-14!28;UBERON:0000930!2.00e-14!28;UBERON:0004119!4.89e-14!169;UBERON:0000925!4.89e-14!169;UBERON:0006595!4.89e-14!169;UBERON:0001007!4.09e-12!155;UBERON:0001555!4.09e-12!155;UBERON:0007026!4.09e-12!155;UBERON:0000161!1.13e-10!35;UBERON:0000166!1.26e-10!21;UBERON:0001444!1.09e-09!48;UBERON:0001004!2.31e-09!72;UBERON:0000062!3.50e-08!511;UBERON:0004121!1.52e-07!169;UBERON:0005157!1.59e-07!51;UBERON:0005153!1.69e-07!37;UBERON:0001828!2.79e-07!8;UBERON:0005631!2.92e-07!14;UBERON:0000158!2.92e-07!14;UBERON:0000077!3.09e-07!130;UBERON:0000924!3.13e-07!173;UBERON:0006601!3.13e-07!173;UBERON:0002097!9.28e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0000344;4.02e-13;20!UBERON:0000165;1.30e-12;28!UBERON:0003729;8.04e-12;13!UBERON:0001828;2.67e-11;8!UBERON:0000161;9.88e-09;19!UBERON:0000166;9.88e-09;19!UBERON:0005631;2.07e-08;10!UBERON:0000158;2.07e-08;10!UBERON:0003350;8.13e-08;8!UBERON:0001555;5.69e-07;54!UBERON:0003929;6.59e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000165,1.04e-13,29;UBERON:0000930,1.04e-13,29;UBERON:0000344,2.46e-13,20;UBERON:0003102,4.49e-12,99;UBERON:0003729,6.29e-12,13;UBERON:0000161,6.76e-12,36;UBERON:0000166,9.75e-12,22;UBERON:0001828,2.52e-11,8;UBERON:0004923,7.51e-10,66;UBERON:0005631,3.52e-09,14;UBERON:0000158,3.52e-09,14;UBERON:0003350,7.35e-08,8;UBERON:0001444,1.56e-07,49;UBERON:0000033,1.90e-07,56;UBERON:0000153,6.54e-07,62;UBERON:0007811,6.54e-07,62 | |||
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| |||
|short_description=p@chr20:55213735..55213739,+ | |||
}} |
Revision as of 09:16, 12 September 2013
Short description: | p@chr20:55213735..55213739, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:55213735..55213739, + |
Coexpression cluster: | C4049_choriocarcinoma_MCF7_pancreatic_Hair_breast_testicular_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.96e-14 | 253 |
germ line cell | 3.14e-12 | 7 |
germ cell | 3.14e-12 | 7 |
ectodermal cell | 2.00e-10 | 72 |
neurectodermal cell | 1.57e-09 | 59 |
oligodendrocyte | 1.64e-09 | 7 |
macroglial cell | 1.64e-09 | 7 |
astrocyte | 1.64e-09 | 7 |
oligodendrocyte precursor cell | 1.64e-09 | 7 |
endo-epithelial cell | 4.41e-09 | 42 |
neurecto-epithelial cell | 6.28e-09 | 20 |
ecto-epithelial cell | 1.66e-08 | 34 |
fibroblast of gingiva | 1.75e-08 | 5 |
receptor cell | 6.72e-07 | 6 |
sensory epithelial cell | 6.72e-07 | 6 |
olfactory epithelial cell | 6.72e-07 | 6 |
endodermal cell | 8.65e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mouth | 1.04e-13 | 29 |
stomodeum | 1.04e-13 | 29 |
mucosa | 2.46e-13 | 20 |
surface structure | 4.49e-12 | 99 |
mouth mucosa | 6.29e-12 | 13 |
orifice | 6.76e-12 | 36 |
oral opening | 9.75e-12 | 22 |
gingiva | 2.52e-11 | 8 |
organ component layer | 7.51e-10 | 66 |
extraembryonic membrane | 3.52e-09 | 14 |
membranous layer | 3.52e-09 | 14 |
epithelium of mucosa | 7.35e-08 | 8 |
subdivision of head | 1.56e-07 | 49 |
head | 1.90e-07 | 56 |
anterior region of body | 6.54e-07 | 62 |
craniocervical region | 6.54e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.16e-11 | 106 |
cell type cancer | 9.28e-10 | 143 |
squamous cell carcinoma | 9.95e-10 | 14 |
thoracic cancer | 3.89e-07 | 4 |
breast cancer | 3.89e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.