FFCP PHASE1:Hg19::chr20:52748891..52748895,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr20:52748891..52748895,-|id=chr20:52748891..52748895,-|ontology_enrichment_celltype=CL:0000066!7.21e-13!254;CL:0000188!9.90e-07!9|ontology_enrichment_celltype_v019=CL:0000322;2.39e-08;3!CL:0000319;4.09e-07;1!CL:1001319;5.42e-07;1!CL:1000600;5.42e-07;1|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-11,253;CL:0000322,2.39e-08,3;CL:0000319,4.09e-07,1;CL:1001319,5.43e-07,1;CL:1000600,5.43e-07,1;CL:0000076,8.74e-07,63|ontology_enrichment_development_v019=UBERON:0009847;4.63e-08;3!UBERON:0003353;4.63e-08;3|ontology_enrichment_disease=DOID:305!2.70e-29!106;DOID:0050687!2.99e-28!143;DOID:162!2.28e-22!235;DOID:14566!2.38e-21!239;DOID:1749!1.95e-16!14;DOID:7!1.78e-14!39;DOID:299!4.25e-14!25;DOID:0050615!8.50e-07!16|ontology_enrichment_disease_v019=DOID:1749;4.02e-30;14!DOID:3910;4.18e-12;2!DOID:3908;1.49e-10;5!DOID:0050687;6.89e-08;143!DOID:299;3.51e-07;25!DOID:3030;4.09e-07;1!DOID:7;6.74e-07;39!DOID:3112;7.38e-07;1!DOID:305;8.14e-07;106|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-30,14;DOID:0050687,1.16e-29,143;DOID:305,1.12e-28,106;DOID:162,3.61e-18,235;DOID:14566,1.18e-17,239;DOID:3910,4.19e-12,2;DOID:3908,1.62e-10,5;DOID:7,1.54e-07,39;DOID:299,3.32e-07,25;DOID:3030,4.09e-07,1;DOID:3112,7.60e-07,1|ontology_enrichment_uberon=UBERON:0005911!8.26e-07!82|ontology_enrichment_uberon_v019=UBERON:0003343;8.42e-13;4!UBERON:0004785;8.42e-13;4!UBERON:0004903;4.18e-12;2!UBERON:0002173;4.18e-12;2!UBERON:0002186;4.18e-12;2!UBERON:0000058;7.05e-09;10!UBERON:0000974;1.09e-08;6!UBERON:0004821;2.39e-08;3!UBERON:0007499;2.39e-08;3!UBERON:0003215;2.39e-08;3!UBERON:0010368;2.39e-08;3!UBERON:0009911;2.39e-08;3!UBERON:0002299;2.39e-08;3!UBERON:0006524;2.39e-08;3!UBERON:0008874;2.39e-08;3!UBERON:0002169;2.39e-08;3!UBERON:0004894;2.39e-08;3!UBERON:0004645;5.42e-07;1!UBERON:0001256;5.42e-07;1!UBERON:0001259;5.42e-07;1!UBERON:0004913;7.38e-07;1!UBERON:0003703;7.38e-07;1!UBERON:0001174;7.38e-07;1!UBERON:0004914;7.38e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0003343,7.79e-13,4;UBERON:0004785,7.79e-13,4;UBERON:0004903,4.19e-12,2;UBERON:0002173,4.19e-12,2;UBERON:0002186,4.19e-12,2;UBERON:0004821,2.39e-08,3;UBERON:0003215,2.39e-08,3;UBERON:0010368,2.39e-08,3;UBERON:0009911,2.39e-08,3;UBERON:0002299,2.39e-08,3;UBERON:0006524,2.39e-08,3;UBERON:0008874,2.39e-08,3;UBERON:0002169,2.39e-08,3;UBERON:0004894,2.39e-08,3;UBERON:0004645,5.43e-07,1;UBERON:0001256,5.43e-07,1;UBERON:0001259,5.43e-07,1;UBERON:0004913,6.80e-07,1;UBERON:0003703,6.80e-07,1;UBERON:0001174,6.80e-07,1;UBERON:0004914,6.80e-07,1|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0.103052529238439,0,0,0.337552664482532,0.194874010322397,0.757301322732344,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,1.07470227243418,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0,0,0,1.58390374586686,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0,0,0,0.0920809889358963,0,0.182091168006717,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0.512900250232778,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0.308097234229289,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0.288666338176536,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0,2.84136146806413,0,0,0,0,0,0.222617410045812,0.659215496907038,0,0,0,0,0.409074730008619,0,0,1.3480252672099,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,12.289692414834,6.86484855790469,0.472775363535873,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr20:52748891..52748895,- | |||
|id=chr20:52748891..52748895,- | |||
|ontology_enrichment_celltype=CL:0000066!7.21e-13!254;CL:0000188!9.90e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000322;2.39e-08;3!CL:0000319;4.09e-07;1!CL:1001319;5.42e-07;1!CL:1000600;5.42e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-11,253;CL:0000322,2.39e-08,3;CL:0000319,4.09e-07,1;CL:1001319,5.43e-07,1;CL:1000600,5.43e-07,1;CL:0000076,8.74e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0009847;4.63e-08;3!UBERON:0003353;4.63e-08;3 | |||
|ontology_enrichment_disease=DOID:305!2.70e-29!106;DOID:0050687!2.99e-28!143;DOID:162!2.28e-22!235;DOID:14566!2.38e-21!239;DOID:1749!1.95e-16!14;DOID:7!1.78e-14!39;DOID:299!4.25e-14!25;DOID:0050615!8.50e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.02e-30;14!DOID:3910;4.18e-12;2!DOID:3908;1.49e-10;5!DOID:0050687;6.89e-08;143!DOID:299;3.51e-07;25!DOID:3030;4.09e-07;1!DOID:7;6.74e-07;39!DOID:3112;7.38e-07;1!DOID:305;8.14e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-30,14;DOID:0050687,1.16e-29,143;DOID:305,1.12e-28,106;DOID:162,3.61e-18,235;DOID:14566,1.18e-17,239;DOID:3910,4.19e-12,2;DOID:3908,1.62e-10,5;DOID:7,1.54e-07,39;DOID:299,3.32e-07,25;DOID:3030,4.09e-07,1;DOID:3112,7.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005911!8.26e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;8.42e-13;4!UBERON:0004785;8.42e-13;4!UBERON:0004903;4.18e-12;2!UBERON:0002173;4.18e-12;2!UBERON:0002186;4.18e-12;2!UBERON:0000058;7.05e-09;10!UBERON:0000974;1.09e-08;6!UBERON:0004821;2.39e-08;3!UBERON:0007499;2.39e-08;3!UBERON:0003215;2.39e-08;3!UBERON:0010368;2.39e-08;3!UBERON:0009911;2.39e-08;3!UBERON:0002299;2.39e-08;3!UBERON:0006524;2.39e-08;3!UBERON:0008874;2.39e-08;3!UBERON:0002169;2.39e-08;3!UBERON:0004894;2.39e-08;3!UBERON:0004645;5.42e-07;1!UBERON:0001256;5.42e-07;1!UBERON:0001259;5.42e-07;1!UBERON:0004913;7.38e-07;1!UBERON:0003703;7.38e-07;1!UBERON:0001174;7.38e-07;1!UBERON:0004914;7.38e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,7.79e-13,4;UBERON:0004785,7.79e-13,4;UBERON:0004903,4.19e-12,2;UBERON:0002173,4.19e-12,2;UBERON:0002186,4.19e-12,2;UBERON:0004821,2.39e-08,3;UBERON:0003215,2.39e-08,3;UBERON:0010368,2.39e-08,3;UBERON:0009911,2.39e-08,3;UBERON:0002299,2.39e-08,3;UBERON:0006524,2.39e-08,3;UBERON:0008874,2.39e-08,3;UBERON:0002169,2.39e-08,3;UBERON:0004894,2.39e-08,3;UBERON:0004645,5.43e-07,1;UBERON:0001256,5.43e-07,1;UBERON:0001259,5.43e-07,1;UBERON:0004913,6.80e-07,1;UBERON:0003703,6.80e-07,1;UBERON:0001174,6.80e-07,1;UBERON:0004914,6.80e-07,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0.103052529238439,0,0,0.337552664482532,0.194874010322397,0.757301322732344,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,1.07470227243418,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0,0,0,1.58390374586686,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0,0,0,0.0920809889358963,0,0.182091168006717,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0.512900250232778,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0.308097234229289,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0.288666338176536,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0,2.84136146806413,0,0,0,0,0,0.222617410045812,0.659215496907038,0,0,0,0,0.409074730008619,0,0,1.3480252672099,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,12.289692414834,6.86484855790469,0.472775363535873,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.797594390929008,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.632994193584081,0.816164040795739,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,1.17398771359254,0,0,0,0,0,1.50323419414493,0,0,0,0.313932918407225,0,1.13843818411917,0,0,0.685946781900644,4.70119715534174,0,0,0.19351266257817,0.0730893170861856,0,0,0,0,1.78154502040776,0.397429223405979,0,0,0.561111741760736,0,1.39866726707491,0,0,0,1.1524383839052,0.124252535565433,1.64985824231757,0.815425236441684,1.04602846312333,0.611989305817931,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,3.06240975906279,0,0.575745591958336,0,0,0,0,0,0,1.19730191562487,0.246277562248017,0,0.339936274560377,0,0,0,0,0.342173675768659,0.704815022316672,0.106787412567695,0,0,0,0,0,3.83004754662109,0,0,0,0.327872630709804,0.157054096250234,0,0,0,0,0,0,0,3.12451019905266,0,0,0,0,0,0.298509605773748,0,0,0.568209015825267,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0.97894681802587,0.179088841081487,0,0.438568099157414,0,0,0,1.02496607435179,0,0.303859956177382,0,0,0,0,1.63804924423206,20.8906972440661,1.90180911022764,0,0,0,1.13503190713367,0.552317850755522,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,1.47221577751538,2.35939446695481,0.366857197043358,7.39364263362165,0.762764190934334,0,0,0,0.60511520611056,0,0,3.11166643269184,3.69640215542613,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0.342976018874837,0,0,3.07303986298317,1.22354542081276,0,0,0,0,1.29556554731173,0,0,0,0,0.173858272302579,0.801711364730253,0,0,0,0,0,0,0,0.4582137370881,0,0.955538938977433,0.335566295393377,0.196300467230486,0.243835849964539,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,1.42843150884526,4.58763333230399,0.160482733378337,0.730336388246517,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.97973576967459,0,0,0,0,0.0673520530145875,0,0,5.37261572832432,0.106727345877715,1.9307228228694,0.538951212639521,0,0,0,0,0,0 | |||
|short_description=p@chr20:52748891..52748895,- | |||
}} |
Revision as of 09:14, 12 September 2013
Short description: | p@chr20:52748891..52748895, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:52748891..52748895, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-11 | 253 |
pneumocyte | 2.39e-08 | 3 |
mucus secreting cell | 4.09e-07 | 1 |
bladder cell | 5.43e-07 | 1 |
lower urinary tract cell | 5.43e-07 | 1 |
squamous epithelial cell | 8.74e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 7.79e-13 | 4 |
respiratory system mucosa | 7.79e-13 | 4 |
bronchoalveolar duct junction | 4.19e-12 | 2 |
alveolar duct | 4.19e-12 | 2 |
bronchiole | 4.19e-12 | 2 |
pulmonary alveolus epithelium | 2.39e-08 | 3 |
alveolus | 2.39e-08 | 3 |
pulmonary lobule | 2.39e-08 | 3 |
lobule | 2.39e-08 | 3 |
alveolus of lung | 2.39e-08 | 3 |
alveolar system | 2.39e-08 | 3 |
pulmonary acinus | 2.39e-08 | 3 |
alveolar sac | 2.39e-08 | 3 |
alveolar wall | 2.39e-08 | 3 |
urinary bladder urothelium | 5.43e-07 | 1 |
wall of urinary bladder | 5.43e-07 | 1 |
mucosa of urinary bladder | 5.43e-07 | 1 |
hepatopancreatic ampulla | 6.80e-07 | 1 |
extrahepatic bile duct | 6.80e-07 | 1 |
common bile duct | 6.80e-07 | 1 |
duodenal papilla | 6.80e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.13e-30 | 14 |
cell type cancer | 1.16e-29 | 143 |
carcinoma | 1.12e-28 | 106 |
cancer | 3.61e-18 | 235 |
disease of cellular proliferation | 1.18e-17 | 239 |
lung adenocarcinoma | 4.19e-12 | 2 |
non-small cell lung carcinoma | 1.62e-10 | 5 |
disease of anatomical entity | 1.54e-07 | 39 |
adenocarcinoma | 3.32e-07 | 25 |
mucinous adenocarcinoma | 4.09e-07 | 1 |
papillary adenocarcinoma | 7.60e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.